CF831977

Overview
NameCF831977
Unique NameCF831977
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length469
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2659 contig Csv1_Contig2659:185..652. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_ARCFU (50S ribosomal protein L14P OS=Archaeoglobus fulgidus GN=rpl14p PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.409e-22
Identity = 55/101 (54.46%), Postives = 70/101 (69.31%), Query Frame = -1
Query:  167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 469
            P  A + CADNTGA+ L II+VKG  G   R P+A VGD+V+ TVKKG P++RK+V  +VIVRQ K + R DG  + FEDNA VI N +GE +GS I G +
Sbjct:   13 PTGARLVCADNTGARELEIIAVKGYKGVRRRYPAAGVGDIVVVTVKKGTPEIRKQVHYAVIVRQRKEYRRPDGTRVKFEDNAAVITNERGEPRGSEIRGAV 113          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_CENSY (50S ribosomal protein L14P OS=Cenarchaeum symbiosum GN=rpl14p PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 9.918e-22
Identity = 54/101 (53.47%), Postives = 69/101 (68.32%), Query Frame = -1
Query:  167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 469
            PV A V CADN+GAK L II V+    R+ RLP+A VGD V   VKKG  +LRK+V  +VI+RQ  P  R +GV + FEDNA V+  P+GEM+G+ I GP+
Sbjct:   25 PVGARVTCADNSGAKVLEIIMVQKAKTRVSRLPAAAVGDYVNVVVKKGPAELRKQVHGAVIIRQKYPVRRLNGVRVAFEDNAAVLTTPEGEMKGTDIKGPV 125          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_PYRFU (50S ribosomal protein L14P OS=Pyrococcus furiosus GN=rpl14p PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.295e-21
Identity = 54/101 (53.47%), Postives = 71/101 (70.30%), Query Frame = -1
Query:  167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 469
            PV A +  ADN+GAK + II V    G   RL SA VGDMV+ATVKKG+PD+R +V+ +VI+RQ K + R DG+ + FEDNA VIV P+G  +G+ I GP+
Sbjct:   22 PVGAYLTVADNSGAKVIQIIGVVEYHGTRRRLASAGVGDMVVATVKKGRPDMRHQVVRAVIIRQRKEYRRLDGMRVKFEDNAAVIVTPEGVPRGTEIRGPV 122          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_PYRAB (50S ribosomal protein L14P OS=Pyrococcus abyssi GN=rpl14p PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.692e-21
Identity = 53/101 (52.48%), Postives = 71/101 (70.30%), Query Frame = -1
Query:  167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 469
            PV A +  ADN+GAK + +I V    G   RL SA VGDMV+ATVKKG+PD+R +V+ +VI+RQ K + R DG+ + FEDNA VIV P+G  +G+ I GP+
Sbjct:   22 PVGAYLTVADNSGAKVIQVIGVVEYHGTRRRLASAGVGDMVVATVKKGRPDMRHQVVRAVIIRQRKEYRRLDGMRIKFEDNAAVIVTPEGVPRGTEIRGPV 122          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_IGNH4 (50S ribosomal protein L14P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.692e-21
Identity = 52/100 (52.00%), Postives = 69/100 (69.00%), Query Frame = -1
Query:  167 VAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 466
            V + V   DN+GAK   II V G  GRL R+P A VGDMV+ TVKKG P++R +V+ +++VRQ KP+ R DG ++ FEDNA VIV+  G  +GS I GP+
Sbjct:   19 VGSYVKVTDNSGAKVAMIIGVPGYHGRLRRIPPAGVGDMVVVTVKKGTPEMRHQVVRAIVVRQRKPFRRPDGTWVAFEDNAVVIVSEDGTPRGSEIRGPV 118          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_PYRHO (50S ribosomal protein L14P OS=Pyrococcus horikoshii GN=rpl14p PE=3 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 2.209e-21
Identity = 52/101 (51.49%), Postives = 71/101 (70.30%), Query Frame = -1
Query:  167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 469
            P+ A +  ADN+GAK + +I V    G   RL SA VGDMV+ATVKKG+PD+R +V+ +VI+RQ K + R DG+ + FEDNA VIV P+G  +G+ I GP+
Sbjct:   22 PIGAYLTVADNSGAKVIQVIGVVEYHGTRRRLASAGVGDMVVATVKKGRPDMRHQVVRAVIIRQRKEYRRLDGMRVKFEDNAAVIVTPEGVPRGTEIRGPV 122          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_METS5 (50S ribosomal protein L14P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.769e-21
Identity = 50/96 (52.08%), Postives = 68/96 (70.83%), Query Frame = -1
Query:  167 VNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 454
            VN +DN+GAK   IISV G  G L R+P A VGD+VM +V+KG PD+RK+   +V++RQ  P+ R DG ++ F+DNA VIVNP G  +G+ I GP+
Sbjct:   24 VNVSDNSGAKEAMIISVFGYRGALRRVPYANVGDLVMVSVRKGAPDVRKQKFKAVVIRQRMPFRRPDGTWISFDDNAVVIVNPDGTAKGTEIRGPV 119          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_PYRKO (50S ribosomal protein L14P OS=Pyrococcus kodakaraensis GN=rpl14p PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 6.428e-21
Identity = 52/101 (51.49%), Postives = 70/101 (69.31%), Query Frame = -1
Query:  167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 469
            P+ A +  ADN+GAK + II V G  G   RL +A VGDMV+ATVKKG+PD+R +V+ +V+VRQ K + R DG+ + FEDNA  IV P+G  +G+ I G I
Sbjct:   22 PIGAYLKVADNSGAKVIQIIGVVGYKGTRRRLAAAGVGDMVVATVKKGRPDMRHQVVRAVVVRQRKEYRRLDGMRVKFEDNAAAIVTPEGVPRGTEIRGAI 122          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_METTP (50S ribosomal protein L14P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.097e-20
Identity = 48/96 (50.00%), Postives = 68/96 (70.83%), Query Frame = -1
Query:  167 VNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 454
            + CADNTGA+TL+++SVK   G   R P A +GDMV+ +VKKG P++RK++  +VI+RQ K + R DG+ + FEDNA VI +  G  +GS I GP+
Sbjct:   18 LECADNTGARTLFVVSVKKYRGVKNRQPCAGIGDMVVVSVKKGTPEMRKQIFNAVIIRQKKEFRRPDGLRVKFEDNAAVITDDAGVPKGSEIKGPV 113          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_SULSO (50S ribosomal protein L14P OS=Sulfolobus solfataricus GN=rpl14p PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.262e-20
Identity = 49/98 (50.00%), Postives = 66/98 (67.35%), Query Frame = -1
Query:  167 ATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 460
            + VN ADN+G K   II V G  G L R+P A + DMVM ++KKG P++RK+   +VIVRQ  P+ R DG ++ FEDNA VI+NP G  +G+ + GPI
Sbjct:   22 SVVNVADNSGGKEAMIIGVYGYRGVLRRVPFANIADMVMVSIKKGTPEVRKQKFRAVIVRQRMPYRRPDGTWISFEDNAVVIINPDGTPKGTEVRGPI 119          

HSP 2 Score: 23.0978 bits (48), Expect = 1.262e-20
Identity = 8/18 (44.44%), Postives = 12/18 (66.67%), Query Frame = -2
Query:  109 KECGDLWPRIASAANAIV 162
            +E  + WP+IAS A  +V
Sbjct:  121 REAAERWPKIASLATLVV 138          
The following BLAST results are available for this feature:
BLAST of CF831977 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
RL14_ARCFU3.409e-2254.4650S ribosomal protein L14P OS=Archaeoglobus fulgid... [more]
RL14_CENSY9.918e-2253.4750S ribosomal protein L14P OS=Cenarchaeum symbiosu... [more]
RL14_PYRFU1.295e-2153.4750S ribosomal protein L14P OS=Pyrococcus furiosus ... [more]
RL14_PYRAB1.692e-2152.4850S ribosomal protein L14P OS=Pyrococcus abyssi GN... [more]
RL14_IGNH41.692e-2152.0050S ribosomal protein L14P OS=Ignicoccus hospitali... [more]
RL14_PYRHO2.209e-2151.4950S ribosomal protein L14P OS=Pyrococcus horikoshi... [more]
RL14_METS53.769e-2152.0850S ribosomal protein L14P OS=Metallosphaera sedul... [more]
RL14_PYRKO6.428e-2151.4950S ribosomal protein L14P OS=Pyrococcus kodakarae... [more]
RL14_METTP1.097e-2050.0050S ribosomal protein L14P OS=Methanosaeta thermop... [more]
RL14_SULSO1.262e-2050.0050S ribosomal protein L14P OS=Sulfolobus solfatari... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B20_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831977 ID=CF831977; Name=CF831977; organism=Citrus sinensis; type=EST; length=469bp
ACAGAAAGTTCACATAAAAGCTTTACTCCTTCCTACTATGAAACTTCACC
AGAATTCTTTTTAGTGCAACAAAAAGGATGATATAGGTTATCGGCCTTGA
ATGTCTTAAACGATAGCATTGGCTGCACTTGCAATCCTCGGCCACAAATC
GCCACACTCTTTATCCAATTGGACCGGTGATGGCAGAACCCTGCATTTCT
CCCTTTGGATTCACAATAACACCTGCATTATCTTCAAAGTACATGAAGAC
ACCATCCTTTCTGCACCATGGCTTGCACTGCCTTACAATGACGGAGGGCA
TCACCTTCTTCCTAAGATCAGGCTTCCCTTTCTTCACAGTAGCCATAACC
ATGTCTCCAACACAGGCAGACGGCAAACGGATGAGGCGACCTGTGATTCC
CTTAACTGAGATGATGTAAAGGGTCTTTGCCCCAGTGTTGTCAGCACAGT
TCACAGTTGCTGCCACTGG
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