CF831977

Overview
NameCF831977
Unique NameCF831977
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length469
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2659 contig Csv1_Contig2659:185..652. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_NITMS (50S ribosomal protein L14P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.132e-20
Identity = 51/101 (50.50%), Postives = 67/101 (66.34%), Query Frame = -1
Query:  167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 469
            PV A + CADN+GAK L +I+V     R  RLPSA VGD     VKKG  +LRK+V  +VI+RQ  P  R +GV + FEDNA V++ P+GE +G+ I GP+
Sbjct:   21 PVGANIVCADNSGAKILEVINVPRHRTRASRLPSASVGDFCNVVVKKGPAELRKQVYGAVIIRQKYPVRRLNGVRVCFEDNAAVLITPEGETKGTDIKGPV 121          

HSP 2 Score: 22.3274 bits (46), Expect = 2.132e-20
Identity = 7/17 (41.18%), Postives = 12/17 (70.59%), Query Frame = -2
Query:  109 ECGDLWPRIASAANAIV 159
            E  + WPR+A+ A+ +V
Sbjct:  124 EASEKWPRVANLASMVV 140          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_METBU (50S ribosomal protein L14P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.443e-20
Identity = 49/98 (50.00%), Postives = 69/98 (70.41%), Query Frame = -1
Query:  167 ATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 460
            A + C DNTGA+T+ IISVK   G   R+P   +GDM + +VKKG P++RK+++ +VIVRQ K + R DG+ + FEDNA VIV+ KG  +G+ I GP+
Sbjct:   16 AKIECVDNTGARTVEIISVKKYRGVKNRMPKGGIGDMCVVSVKKGTPEMRKQILYAVIVRQKKEFRRPDGIRVAFEDNAVVIVDDKGIPKGTDIKGPV 113          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_SULTO (50S ribosomal protein L14P OS=Sulfolobus tokodaii GN=rpl14p PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.167e-20
Identity = 50/97 (51.55%), Postives = 66/97 (68.04%), Query Frame = -1
Query:  167 TVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 457
            TV  ADN+GAK   II + G  G L R+P A + D+VM +V+KG P++RK+   +VIVRQ  P+ R DG ++ FEDNA VIVNP G  +G+ I GPI
Sbjct:   26 TVTVADNSGAKEAVIIGIYGYKGVLRRIPFANIADLVMVSVRKGTPEVRKQKFKAVIVRQRMPFRRPDGTWIAFEDNAVVIVNPDGTPKGTEIRGPI 122          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_SULAC (50S ribosomal protein L14P OS=Sulfolobus acidocaldarius GN=rpl14p PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.701e-20
Identity = 48/98 (48.98%), Postives = 67/98 (68.37%), Query Frame = -1
Query:  167 ATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 460
            ++V  ADN+GAK   II + G  G L R+P A + D+VM +V+KG PD+RK+   +VIVRQ  P+ R DG ++ FEDNA VI+NP G  +G+ + GPI
Sbjct:   22 SSVVVADNSGAKEAVIIGIYGYRGVLRRVPFANIADLVMVSVRKGSPDVRKQKFKAVIVRQRMPFRRPDGTWISFEDNAVVIINPDGTPKGTEVRGPI 119          

HSP 2 Score: 23.0978 bits (48), Expect = 4.701e-20
Identity = 7/18 (38.89%), Postives = 12/18 (66.67%), Query Frame = -2
Query:  109 KECGDLWPRIASAANAIV 162
            +E  + WP+IAS A  ++
Sbjct:  121 REAAERWPKIASVATMVI 138          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_HALSA (50S ribosomal protein L14P OS=Halobacterium salinarium GN=rpl14p PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 9.283e-20
Identity = 48/96 (50.00%), Postives = 65/96 (67.71%), Query Frame = -1
Query:  167 VNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 454
            + CADNTGA+ L I SV G  GR  R P A +GD +  +V KG P++R++V+ +V+VRQ KP  R DG  + FEDNA VI++  GE +G+ I GPI
Sbjct:   18 ITCADNTGARELKITSVMGYQGRKNRHPKAGLGDTITVSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIIDDLGEPRGTEIKGPI 113          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_HALS3 (50S ribosomal protein L14P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 9.283e-20
Identity = 48/96 (50.00%), Postives = 65/96 (67.71%), Query Frame = -1
Query:  167 VNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 454
            + CADNTGA+ L I SV G  GR  R P A +GD +  +V KG P++R++V+ +V+VRQ KP  R DG  + FEDNA VI++  GE +G+ I GPI
Sbjct:   18 ITCADNTGARELKITSVMGYQGRKNRHPKAGLGDTITVSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIIDDLGEPRGTEIKGPI 113          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_PYRAE (50S ribosomal protein L14P OS=Pyrobaculum aerophilum GN=rpl14p PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.212e-19
Identity = 47/98 (47.96%), Postives = 70/98 (71.43%), Query Frame = -1
Query:  167 VNCADNTGAKTLYIISVKGITGRLI--RLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 454
            V  ADN+GAK + +I V G   + +  R+P A VGDMV+  V++GKP+LRK++  +++VRQ +P+ R DG ++ FEDNA VIV P+G+ +GS I GP+
Sbjct:   28 VPVADNSGAKLVRVIGVVGHYSKTVHRRIPGAGVGDMVVVVVREGKPELRKQIFRAIVVRQRRPYRRPDGTWVAFEDNAVVIVTPEGDPKGSEIHGPV 125          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_PYRCJ (50S ribosomal protein L14P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.583e-19
Identity = 47/98 (47.96%), Postives = 70/98 (71.43%), Query Frame = -1
Query:  167 VNCADNTGAKTLYIISVKGITGRLI--RLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 454
            V  ADN+GAK + +I V G   + +  R+P A VGDMV+  V++GKP+LRK++  +++VRQ +P+ R DG ++ FEDNA VIV P+G+ +GS I GP+
Sbjct:   28 VPVADNSGAKLVRVIGVVGHYSKSVHRRIPGAGVGDMVVVVVREGKPELRKQIFRAIVVRQRRPYRRPDGTWVAFEDNAVVIVTPEGDPKGSEIHGPV 125          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_PYRAR (50S ribosomal protein L14P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.583e-19
Identity = 47/98 (47.96%), Postives = 69/98 (70.41%), Query Frame = -1
Query:  167 VNCADNTGAKTLYIISVKGITGRLI--RLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 454
            V  ADN+GAK + +I V G   + +  R+P A VGDMV+  VK+GKP+LR+++   ++VRQ +P+ R DG ++ FEDNA VIV P+G+ +GS I GP+
Sbjct:   28 VPVADNSGAKLVRVIGVVGHYSKTVHRRIPGAGVGDMVVVVVKEGKPELRRQIFRGIVVRQRRPYRRPDGTWVAFEDNAVVIVTPEGDPKGSEIHGPV 125          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_PYRIL (50S ribosomal protein L14P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.701e-19
Identity = 46/98 (46.94%), Postives = 70/98 (71.43%), Query Frame = -1
Query:  167 VNCADNTGAKTLYIISVKGITGRLI--RLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 454
            V  ADN+GA+ + +I V G   + +  R+P A VGDMV+  V++GKP+LRK++  +++VRQ +P+ R DG ++ FEDNA VIV P+G+ +GS I GP+
Sbjct:   28 VPVADNSGARLVRVIGVVGHYSKTVHRRIPGAGVGDMVVVVVREGKPELRKQIFRAIVVRQRRPYRRPDGTWVAFEDNAVVIVTPEGDPKGSEIHGPV 125          
The following BLAST results are available for this feature:
BLAST of CF831977 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
RL14_NITMS2.132e-2050.5050S ribosomal protein L14P OS=Nitrosopumilus marit... [more]
RL14_METBU2.443e-2050.0050S ribosomal protein L14P OS=Methanococcoides bur... [more]
RL14_SULTO4.167e-2051.5550S ribosomal protein L14P OS=Sulfolobus tokodaii ... [more]
RL14_SULAC4.701e-2048.9850S ribosomal protein L14P OS=Sulfolobus acidocald... [more]
RL14_HALSA9.283e-2050.0050S ribosomal protein L14P OS=Halobacterium salina... [more]
RL14_HALS39.283e-2050.0050S ribosomal protein L14P OS=Halobacterium salina... [more]
RL14_PYRAE1.212e-1947.9650S ribosomal protein L14P OS=Pyrobaculum aerophil... [more]
RL14_PYRCJ1.583e-1947.9650S ribosomal protein L14P OS=Pyrobaculum calidifo... [more]
RL14_PYRAR1.583e-1947.9650S ribosomal protein L14P OS=Pyrobaculum arsenati... [more]
RL14_PYRIL2.701e-1946.9450S ribosomal protein L14P OS=Pyrobaculum islandic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01B20_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831977 ID=CF831977; Name=CF831977; organism=Citrus sinensis; type=EST; length=469bp
ACAGAAAGTTCACATAAAAGCTTTACTCCTTCCTACTATGAAACTTCACC
AGAATTCTTTTTAGTGCAACAAAAAGGATGATATAGGTTATCGGCCTTGA
ATGTCTTAAACGATAGCATTGGCTGCACTTGCAATCCTCGGCCACAAATC
GCCACACTCTTTATCCAATTGGACCGGTGATGGCAGAACCCTGCATTTCT
CCCTTTGGATTCACAATAACACCTGCATTATCTTCAAAGTACATGAAGAC
ACCATCCTTTCTGCACCATGGCTTGCACTGCCTTACAATGACGGAGGGCA
TCACCTTCTTCCTAAGATCAGGCTTCCCTTTCTTCACAGTAGCCATAACC
ATGTCTCCAACACAGGCAGACGGCAAACGGATGAGGCGACCTGTGATTCC
CTTAACTGAGATGATGTAAAGGGTCTTTGCCCCAGTGTTGTCAGCACAGT
TCACAGTTGCTGCCACTGG
back to top