CF831977

Overview
NameCF831977
Unique NameCF831977
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length469
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2659 contig Csv1_Contig2659:185..652. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_ACAM1 (50S ribosomal protein L14 OS=Acaryochloris marina (strain MBIC 11017) GN=rplN PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.099e-12
Identity = 42/100 (42.00%), Postives = 61/100 (61.00%), Query Frame = -1
Query:  167 TVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKK---VMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 457
            T+N ADN+GAK L  I V G   R        VGD+++ATVK   P++  K   V+ +VIVR  K  CR+ G+ + F+DNA V++NP G  +G+ + GP+
Sbjct:    7 TLNVADNSGAKRLLCIRVIGGGNRRY----GGVGDVIIATVKDATPNMPVKKSDVVRAVIVRTRKSICRESGMSIRFDDNAAVLINPDGNPRGTRVFGPV 102          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_SACEN (50S ribosomal protein L14 OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=rplN PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.435e-12
Identity = 42/97 (43.30%), Postives = 60/97 (61.86%), Query Frame = -1
Query:  164 ADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKK---VMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPIG 445
            ADN+GAK +  I V G +GR      A +GD+++ATVK   P    K   V+ +VIVRQ K   R DG ++ F++NA V++ P GE +G+ I GP+G
Sbjct:   11 ADNSGAKEILTIRVLGGSGRRY----AGIGDIIVATVKDAIPGANVKKGEVVKAVIVRQKKEKRRADGSYIRFDENAAVLIKPSGEPRGTRIFGPVG 103          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_THERP (50S ribosomal protein L14 OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=rplN PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.875e-12
Identity = 43/96 (44.79%), Postives = 63/96 (65.62%), Query Frame = -1
Query:  167 ADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKK---VMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 445
            ADNTGAK +  I V G  G   R  +  VGD+++A+VKK +P+   K   V+ +VIVR  K + RKDG ++ F+DNA V+V P+G+ +G+ I GP+
Sbjct:   11 ADNTGAKEIMCIRVLG--GSKHRYGT--VGDLIVASVKKAEPNAAVKKGDVVYAVIVRTKKEYRRKDGSYIKFDDNAAVLVTPQGQPRGTRIFGPV 102          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RK14_MARPO (50S ribosomal protein L14, chloroplastic OS=Marchantia polymorpha GN=rpl14 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.448e-12
Identity = 37/99 (37.37%), Postives = 63/99 (63.64%), Query Frame = -1
Query:  167 VNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDL---RKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 454
            +N ADN+GA+ L  I V G + R      A +GD+++A VK+  P++   + +++ +VIVR CK + R +G  + F+DNA V++N +G  +G+ + GPI
Sbjct:    8 LNVADNSGARKLMCIRVIGTSNRKY----ANIGDIIIAVVKEAVPNMPIKKSEIVRAVIVRTCKEFKRNNGSIIKFDDNAAVVINQEGNPKGTRVFGPI 102          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_HERA2 (50S ribosomal protein L14 OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=rplN PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.455e-12
Identity = 44/96 (45.83%), Postives = 57/96 (59.38%), Query Frame = -1
Query:  167 ADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKK---VMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 445
            ADNTGAK L  I V G T R      A VGD ++ATVK+  P    K   V+ +VIVR  K + R DG  + F+DNA VI+N +G  +G+ I GP+
Sbjct:   11 ADNTGAKELLCIRVLGGTKRRY----ASVGDTIIATVKQANPGGSAKKGEVVRAVIVRVKKGYTRPDGSMIQFDDNAAVIINQQGNPRGTRIFGPV 102          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_CLAMS (50S ribosomal protein L14 OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=rplN PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 9.304e-12
Identity = 43/97 (44.33%), Postives = 63/97 (64.95%), Query Frame = -1
Query:  164 ADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKP--DLRK-KVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPIG 445
            ADNTGAK +  I V G +GR      A +GD+++ATVK   P  +++K +V+ +VIVR  K   R DG ++ F++NA VI+N  GE +G+ I GP+G
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGLGDVIVATVKDAIPGGNVKKGEVVKAVIVRTKKETRRPDGSYIKFDENAAVILNSNGEPRGTRIFGPVG 103          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_CLAM3 (50S ribosomal protein L14 OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=rplN PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 9.304e-12
Identity = 43/97 (44.33%), Postives = 63/97 (64.95%), Query Frame = -1
Query:  164 ADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKP--DLRK-KVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPIG 445
            ADNTGAK +  I V G +GR      A +GD+++ATVK   P  +++K +V+ +VIVR  K   R DG ++ F++NA VI+N  GE +G+ I GP+G
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGLGDVIVATVKDAIPGGNVKKGEVVKAVIVRTKKETRRPDGSYIKFDENAAVILNSNGEPRGTRIFGPVG 103          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_CHLT3 (50S ribosomal protein L14 OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=rplN PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 9.304e-12
Identity = 40/96 (41.67%), Postives = 60/96 (62.50%), Query Frame = -1
Query:  167 ADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPD---LRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 445
            ADN+GAK +  I V G TGR      A +GDM++ +VK   P     +K V  +V+VR  K + RKDG ++ F++NA V++N +GE +G+ I GP+
Sbjct:   11 ADNSGAKRVRCIHVLGGTGRRY----ATIGDMIVVSVKSAIPGGAVKKKDVSKAVVVRTKKEYRRKDGSYIRFDENAVVLLNTQGEPRGTRIFGPV 102          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_CHLP8 (50S ribosomal protein L14 OS=Chlorobaculum parvum (strain NCIB 8327) GN=rplN PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 9.304e-12
Identity = 41/96 (42.71%), Postives = 59/96 (61.46%), Query Frame = -1
Query:  167 ADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPD---LRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 445
            ADN+GAK +  I V G TGR      A +GD +M TVK   P+    +K V  +V+VR  K   RKDG ++ F++NA V++N +GE +G+ I GP+
Sbjct:   11 ADNSGAKKVRCIHVFGGTGRRY----AALGDQIMVTVKAAVPNGVVKKKDVCKAVVVRCAKEQRRKDGSYIRFDENAVVLLNAQGEPRGTRIFGPV 102          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_PROA2 (50S ribosomal protein L14 OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.215e-11
Identity = 41/96 (42.71%), Postives = 58/96 (60.42%), Query Frame = -1
Query:  167 ADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPD---LRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 445
            ADN+GAK +  I V G TGR      A +GD +M TVK   P     +K V  +V+VR  K   RKDG ++ F++NA V++N +GE +G+ I GP+
Sbjct:   11 ADNSGAKKVRCIHVFGGTGRRY----AAIGDQIMVTVKAAVPGGVVKKKDVCKAVVVRCAKEKKRKDGSYIRFDENAVVLLNAQGEPRGTRIFGPV 102          
The following BLAST results are available for this feature:
BLAST of CF831977 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
RL14_ACAM11.099e-1242.0050S ribosomal protein L14 OS=Acaryochloris marina ... [more]
RL14_SACEN1.435e-1243.3050S ribosomal protein L14 OS=Saccharopolyspora ery... [more]
RL14_THERP1.875e-1244.7950S ribosomal protein L14 OS=Thermomicrobium roseu... [more]
RK14_MARPO2.448e-1237.3750S ribosomal protein L14, chloroplastic OS=Marcha... [more]
RL14_HERA25.455e-1245.8350S ribosomal protein L14 OS=Herpetosiphon auranti... [more]
RL14_CLAMS9.304e-1244.3350S ribosomal protein L14 OS=Clavibacter michigane... [more]
RL14_CLAM39.304e-1244.3350S ribosomal protein L14 OS=Clavibacter michigane... [more]
RL14_CHLT39.304e-1241.6750S ribosomal protein L14 OS=Chloroherpeton thalas... [more]
RL14_CHLP89.304e-1242.7150S ribosomal protein L14 OS=Chlorobaculum parvum ... [more]
RL14_PROA21.215e-1142.7150S ribosomal protein L14 OS=Prosthecochloris aest... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B20_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831977 ID=CF831977; Name=CF831977; organism=Citrus sinensis; type=EST; length=469bp
ACAGAAAGTTCACATAAAAGCTTTACTCCTTCCTACTATGAAACTTCACC
AGAATTCTTTTTAGTGCAACAAAAAGGATGATATAGGTTATCGGCCTTGA
ATGTCTTAAACGATAGCATTGGCTGCACTTGCAATCCTCGGCCACAAATC
GCCACACTCTTTATCCAATTGGACCGGTGATGGCAGAACCCTGCATTTCT
CCCTTTGGATTCACAATAACACCTGCATTATCTTCAAAGTACATGAAGAC
ACCATCCTTTCTGCACCATGGCTTGCACTGCCTTACAATGACGGAGGGCA
TCACCTTCTTCCTAAGATCAGGCTTCCCTTTCTTCACAGTAGCCATAACC
ATGTCTCCAACACAGGCAGACGGCAAACGGATGAGGCGACCTGTGATTCC
CTTAACTGAGATGATGTAAAGGGTCTTTGCCCCAGTGTTGTCAGCACAGT
TCACAGTTGCTGCCACTGG
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