CF831985

Overview
NameCF831985
Unique NameCF831985
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831985 vs. ExPASy Swiss-Prot
Match: RS9_ENCCU (40S ribosomal protein S9 OS=Encephalitozoon cuniculi GN=RPS9 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.541e-28
Identity = 74/165 (44.85%), Postives = 103/165 (62.42%), Query Frame = 1
Query:   91 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRI-FEGEALLRRMHRYGFL--------EESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFG 558
            K    PR P+EKERL  E +LVG YGL+ K ELW ++   ++ +  AR LLT    NP  I   G +LLRR+ +YG L        +E  N L+ VL LT+ ++LERRLQ  VF +G+AKS+HHAR+LI  R I +  Q+V++P F+VR D +  IE++  S +G
Sbjct:    8 KRASTPRDPFEKERLIREAQLVGVYGLKNKHELWVMEKIFAKDKERARILLT--STNPEDIPINGRSLLRRLMKYGILGGIDLCDKQEVVNGLNKVLDLTINHYLERRLQFRVFAAGLAKSVHHARLLIGGRCISIKDQIVDVPGFMVRADKEPLIEYNPYSRYG 170          
BLAST of CF831985 vs. ExPASy Swiss-Prot
Match: RS4_STAMF (30S ribosomal protein S4P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.541e-28
Identity = 70/157 (44.59%), Postives = 103/157 (65.61%), Query Frame = 1
Query:   91 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEG--EALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 555
            K ++ PR P+ KE L  EL+L+G YGLR KRELWR Q  + + R+ AR LL      P+ I E   +ALL R++R G L E+ + L+ VL LTVE+ LERRLQT+V+K G+A++I+HAR LI   HI +  + +  P ++V  + +  ++++ TSPF
Sbjct:    9 KKWEGPRHPWRKEVLVQELKLLGTYGLRNKRELWRAQTIVRKFRHQARSLLAA----PQEIREQAEKALLNRLYRLGLLHENAS-LEDVLGLTVEDLLERRLQTIVYKKGLARTIYHARQLIIHGHIAIAGRRITSPGYIVSREEEDLVDYAPTSPF 160          
BLAST of CF831985 vs. ExPASy Swiss-Prot
Match: RS4_METKA (30S ribosomal protein S4P OS=Methanopyrus kandleri GN=rps4p PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.432e-28
Identity = 65/156 (41.67%), Postives = 104/156 (66.67%), Query Frame = 1
Query:   91 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNK--LDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 552
            K ++ PR P+E ERL+ E +L+ +YGLR K+ELWR Q  L R R  A++L+   +   +R  E EAL R+++  G L++   +  LD +L LTVE+ LERRLQT+V++ G+AK+   AR L+  RHI +G ++V +PS++V  + ++ +++S  SP
Sbjct:    9 KKYETPRHPWEAERLEYERKLMRKYGLRRKKELWRHQTQLKRWRERAKELMARTDPEAQR--EREALFRKLYDLGILDKKPEEATLDDILRLTVEDVLERRLQTIVYRKGLAKTPLQARQLVVHRHIAIGDRIVTVPSYLVSREEEEEVDYSPYSP 162          
BLAST of CF831985 vs. ExPASy Swiss-Prot
Match: RS4_HYPBU (30S ribosomal protein S4P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps4p PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.795e-27
Identity = 68/159 (42.77%), Postives = 100/159 (62.89%), Query Frame = 1
Query:   91 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGR 567
            K +  P+ P+ KERL  EL LVG YGLR KRELW+++      R+ AR LL L  +   +  E +ALL R++  G L E+   LD VL LT E+FLERRLQT+V+K G+A++I+ AR LI   HI +  + +  P ++V+ D +  ++++ TSP+   R
Sbjct:    9 KKWMGPKHPWIKERLVRELELVGRYGLRNKRELWKLETLARYFRHRARSLLALPPEVREK--EEKALLARLNELGVLPENAT-LDDVLNLTAEHFLERRLQTIVYKKGLARTIYEARQLIVHGHIAIAGRKIRSPGYLVKKDEEDLVDYAPTSPYAKRR 164          
BLAST of CF831985 vs. ExPASy Swiss-Prot
Match: RS4_METJA (30S ribosomal protein S4P OS=Methanocaldococcus jannaschii GN=rps4p PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.453e-27
Identity = 67/169 (39.64%), Postives = 100/169 (59.17%), Query Frame = 1
Query:   79 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFG-GGRPGRVK 582
            R + KT++ P  P+ KER++ E  L  +YGLR KRE+W+ +  L + R  AR L++  ++  +   E   L   + +YG L+     LD VL+LTVE+ LERRLQTLVF+ G+A++   AR LI   HI V  ++V  PS++V V+ +  I ++  SPF     P R K
Sbjct:    6 RRFKKTYETPNHPWIKERIEREKELCRKYGLRRKREVWKAETILRKYRRQARRLIS--DRTEQGAKEAVQLFNVLKKYGILKIENPTLDDVLSLTVEDILERRLQTLVFRKGLARTPRQARQLIVHGHIAVNGRVVTAPSYMVTVEEEDKISYAKNSPFNDDNHPERAK 172          
BLAST of CF831985 vs. ExPASy Swiss-Prot
Match: RS9_TOBAC (40S ribosomal protein S9 (Fragment) OS=Nicotiana tabacum GN=RPS9 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.442e-26
Identity = 56/65 (86.15%), Postives = 63/65 (96.92%), Query Frame = 1
Query:  418 AKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNIKAAAKK 612
            AKS+HHARVLIRQRHIRVGRQ+VN+PSF+VR+DSQKHI+FSL SPFGGGRPGRVKR+N KAAAKK
Sbjct:    1 AKSVHHARVLIRQRHIRVGRQVVNVPSFMVRLDSQKHIDFSLISPFGGGRPGRVKRKNQKAAAKK 65          
BLAST of CF831985 vs. ExPASy Swiss-Prot
Match: RS4_THEAC (30S ribosomal protein S4P OS=Thermoplasma acidophilum GN=rps4p PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.460e-26
Identity = 66/157 (42.04%), Postives = 99/157 (63.06%), Query Frame = 1
Query:   91 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDL---LTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 552
            K +  PR P+EKER+D E ++V +YGL+ K+E+WR +  LS IR+ ARDL   L  ++ N ++  + E +++R++RY  L E+   LD VL+LTVEN L+RRLQT+VF+  +A S+  AR LI   HI V  + V +P  +V    +  I +   SP
Sbjct:    9 KKYSTPRHPWEKERIDEENKIVVKYGLKNKKEIWRSEALLSSIRSQARDLRARLRTNDVNAQK--QLERMIKRLNRYKLLSENAT-LDDVLSLTVENILDRRLQTIVFRKNLAISVRQARQLITHGHISVAGRRVTVPGMLVEAKDEDTIAYEENSP 162          
BLAST of CF831985 vs. ExPASy Swiss-Prot
Match: RS4_PICTO (30S ribosomal protein S4P OS=Picrophilus torridus GN=rps4p PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.479e-26
Identity = 66/156 (42.31%), Postives = 97/156 (62.18%), Query Frame = 1
Query:   91 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLT-LDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 555
            K +  PR P+EK+R+DAE +L+ +YGL+ KRELWR Q  L+  R  AR L   L   +P  I + + L+ ++ R   L E+   LD VL+L +E+ LERRL+TLV+K  +A ++  AR  I   HI+V  ++V IPSF+V    +  I ++ TSPF
Sbjct:    9 KKYSTPRHPWEKDRIDAERQLLIKYGLKNKRELWRAQTILTNFRTQARTLQAKLRYNDPLAIKQFQLLIGKLSRLNLLGENAT-LDDVLSLNIEDILERRLETLVYKKNLALTMKQARQFITHGHIKVNDRVVTIPSFMVEKSMEDSITYNETSPF 163          
BLAST of CF831985 vs. ExPASy Swiss-Prot
Match: RS4_SULTO (30S ribosomal protein S4P OS=Sulfolobus tokodaii GN=rps4p PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.156e-26
Identity = 64/171 (37.43%), Postives = 100/171 (58.48%), Query Frame = 1
Query:   91 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNIKAA 603
            + ++ P  P+ +  L+ E  L+G+YGLR KRELW  Q  + + R+ AR LL L      R    + L+++++R G +E+    LD +L L  EN+LERRLQT+V+K G+A++I+ AR LI   HI +G + V  P ++V    +  I+F  TSPF    P +    N++ A
Sbjct:    9 RKWEGPGHPWIRINLEKEQVLIGKYGLRNKRELWLAQTIIRKFRHQARSLLALPPAE--RSTREKQLIQKLYRMGIIEKDNATLDDILGLNEENYLERRLQTIVYKKGLARTIYQARQLIVHGHIAIGGRRVTSPGYIVMRGEEDLIDFYPTSPFKQHPPTQQGEENVQQA 177          
BLAST of CF831985 vs. ExPASy Swiss-Prot
Match: RS4_METB6 (30S ribosomal protein S4P OS=Methanoregula boonei (strain 6A8) GN=rps4p PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.221e-25
Identity = 67/158 (42.41%), Postives = 97/158 (61.39%), Query Frame = 1
Query:   91 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTL-DEKNPRRIFEGE--ALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 555
            K+++ P+RP+EK R++ E RLV EYGLR KRE+W+ Q  L + R AAR+LL L      + +FE +   L+  M R G L    + +D VLAL V   LERRLQTLV++ G+A+S   AR L+   HI +G + V +P ++V    +  I ++  SPF
Sbjct:    9 KSYQTPKRPFEKTRIEEETRLVIEYGLRNKREVWKAQSHLRKYRKAARELLALMSSATNQTVFEAKKSELISHMQRAGLLGPDAD-IDNVLALKVPAQLERRLQTLVYRKGLARSPKQARQLVTHGHIAIGGRRVTVPGYLVTRGEETTISYAGKSPF 165          
The following BLAST results are available for this feature:
BLAST of CF831985 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RS9_ENCCU1.541e-2844.8540S ribosomal protein S9 OS=Encephalitozoon cunicu... [more]
RS4_STAMF1.541e-2844.5930S ribosomal protein S4P OS=Staphylothermus marin... [more]
RS4_METKA3.432e-2841.6730S ribosomal protein S4P OS=Methanopyrus kandleri... [more]
RS4_HYPBU3.795e-2742.7730S ribosomal protein S4P OS=Hyperthermus butylicu... [more]
RS4_METJA8.453e-2739.6430S ribosomal protein S4P OS=Methanocaldococcus ja... [more]
RS9_TOBAC1.442e-2686.1540S ribosomal protein S9 (Fragment) OS=Nicotiana t... [more]
RS4_THEAC2.460e-2642.0430S ribosomal protein S4P OS=Thermoplasma acidophi... [more]
RS4_PICTO5.479e-2642.3130S ribosomal protein S4P OS=Picrophilus torridus ... [more]
RS4_SULTO7.156e-2637.4330S ribosomal protein S4P OS=Sulfolobus tokodaii G... [more]
RS4_METB61.221e-2542.4130S ribosomal protein S4P OS=Methanoregula boonei ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831985 ID=CF831985; Name=CF831985; organism=Citrus sinensis; type=EST; length=613bp
CTTTTACAAAGCTCTTACAGGGGGAGAGAGTGAGGGTAGCACCAACGGCG
CGCAAAGATGGTGCACGTTTCATTCTACCGCAACTATGGGAAAACCTTCA
AGAAGCCAAGACGTCCCTATGAGAAGGAGCGATTGGATGCTGAGTTGAGA
CTTGTGGGAGAGTATGGGCTTCGCTGCAAGAGGGAACTCTGGAGGGTTCA
ATACGCACTGAGCCGCATCCGAAATGCTGCGAGGGATCTTCTCACTCTCG
ATGAGAAGAACCCACGACGTATTTTTGAGGGTGAGGCCCTTCTCAGGAGG
ATGCACAGGTATGGCTTCTTGGAAGAGAGCCAGAACAAGCTTGATTATGT
GTTGGCCCTCACTGTGGAGAACTTTCTTGAGCGTCGTCTTCAGACCCTTG
TGTTCAAGAGTGGCATGGCTAAGTCAATTCACCATGCTCGAGTGCTCATC
AGGCAGAGGCACATTAGGGTTGGAAGGCAGCTTGTCAACATTCCCTCATT
TGTAGTGAGGGTTGATTCCCAGAAGCACATTGAATTCTCACTCACAAGTC
CATTTGGAGGCGGGCGCCCCGGAAGAGTGAAGAGAAGGAACATTAAGGCT
GCTGCCAAGAAGG
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