CF831991

Overview
NameCF831991
Unique NameCF831991
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831991 vs. ExPASy Swiss-Prot
Match: RLP7_YEAST (Ribosome biogenesis protein RLP7 OS=Saccharomyces cerevisiae GN=RLP7 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.096e-23
Identity = 61/131 (46.56%), Postives = 79/131 (60.31%), Query Frame = -1
Query:  378 LLFIIRIRGINAVDPKTK--KILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGY------GKLNKQRIALTDNSIIEQAFGQHGIICMEDLIHEILTVGPHFKEANNFLWPF 746
            LLFI+R+RG  AV+   K  KIL LLRL +   GVF+K+ K    +L  + PYV  G P+L S++ LI KRG        +     I L DN+I+E+  G HGIIC+ED+IHEI T+G  F   N FL PF
Sbjct:  141 LLFIVRVRGPLAVNIPNKAFKILSLLRLVETNTGVFVKLTKNVYPLLKVIAPYVVIGKPSLSSIRSLIQKRGRIIYKGENEAEPHEIVLNDNNIVEEQLGDHGIICVEDIIHEIATMGESFSVCNFFLQPF 271          
BLAST of CF831991 vs. ExPASy Swiss-Prot
Match: RLP7_CANGA (Ribosome biogenesis protein RLP7 OS=Candida glabrata GN=RLP7 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.625e-22
Identity = 55/136 (40.44%), Postives = 87/136 (63.97%), Query Frame = -1
Query:  378 NPEAKLLFIIRIRGINA--VDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRG---YGKLNKQR---IALTDNSIIEQAFGQHGIICMEDLIHEILTVGPHFKEANNFLWPF 761
            N E +LLF++R++G  A  +  K  +IL  LRL ++   VF+K+ + T ++L  + PYV  G P+LKS++ LI KR    Y + +++    I L DN+I+E+  G  G+IC++D+IHEI T+G +F + N FL PF
Sbjct:  131 NGEEQLLFVLRVKGPVAASIPHKAYRILSTLRLEEVNTAVFIKLTETTFSLLKIIAPYVIVGKPSLKSIRSLIQKRSKIVYKREDEEEAKEIILNDNNIVEEKLGDCGVICIDDIIHEIATLGENFTKCNFFLQPF 266          
BLAST of CF831991 vs. ExPASy Swiss-Prot
Match: RLP7_KLULA (Ribosome biogenesis protein RLP7 OS=Kluyveromyces lactis GN=RLP7 PE=3 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 9.959e-22
Identity = 56/134 (41.79%), Postives = 80/134 (59.70%), Query Frame = -1
Query:  378 EAKLLFIIRIRGINAVD--PKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNK------QRIALTDNSIIEQAFGQHGIICMEDLIHEILTVGPHFKEANNFLWPF 755
            E  LLF+IR++G  AV    K  K+L LLRL ++  GVF+K+ K    +L  V PY+  G P+L S++ LI KR      +      + I L DN+I+E+  G  G+IC+ED+IHEI T+G +F +   FL PF
Sbjct:  134 EPSLLFVIRVKGPTAVKIPAKAYKVLSLLRLVELNTGVFIKLTKDVYPLLKLVSPYIVIGQPSLASIRSLIQKRSRIMWQRPEDKEPKEIILNDNNIVEEKLGDEGVICIEDIIHEISTLGENFSKCTFFLLPF 267          
BLAST of CF831991 vs. ExPASy Swiss-Prot
Match: RL7_ENCCU (60S ribosomal protein L7 OS=Encephalitozoon cuniculi GN=RPL7 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.301e-21
Identity = 58/175 (33.14%), Postives = 99/175 (56.57%), Query Frame = -1
Query:  270 EAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQAFGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXKRN-HYVEGGDAGNREDYINELIRRM 791
            ++ +K GFYV  EA+   +I IR      PK +K+L+L RL++I   V ++ NK+T  ML  ++ +V +G   ++ +++L+Y +G G+    R+ LT N  IE  F    I C+E+L+H I      FK+ N+FL+PF           +++  + +GG  GN +D ++ L+ RM
Sbjct:   66 KSSMKNGFYVPKEAEFFAVILIRSKCNCPPKVRKVLELFRLKRINTCVLVRNNKSTRKMLQIIKDHVAFGTIGMELLRKLVYTKGSGRNGHVRVKLT-NEFIEDMF-DGKIRCIEELVHHIYNGTEMFKKVNSFLYPFHLSPPRGGFKGQKSKSFNDGGSVGNHQDLLSNLLERM 238          
BLAST of CF831991 vs. ExPASy Swiss-Prot
Match: RLP7_ASHGO (Ribosome biogenesis protein RLP7 OS=Ashbya gossypii GN=RLP7 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.438e-20
Identity = 52/133 (39.10%), Postives = 78/133 (58.65%), Query Frame = -1
Query:  378 AKLLFIIRIRGINA--VDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGY------GKLNKQRIALTDNSIIEQAFGQHGIICMEDLIHEILTVGPHFKEANNFLWPF 752
            A LLF++R+RG  A  +  K  ++L LLRL ++  GVF+++      +L  V PYV  G P+L S++ L+ KR        G+     + L DN ++E+  G  G+IC+ED+IHEI T+G  F + N FL PF
Sbjct:  110 ATLLFVVRVRGPAAAKIPRKAHRVLTLLRLAEVNTGVFVRLTAEVFPLLQVVAPYVVVGRPSLASIRALVQKRARVVHQRAGEAAPVEMVLNDNGVVEERLGDEGVICVEDIIHEIATMGEAFAKCNFFLLPF 242          
BLAST of CF831991 vs. ExPASy Swiss-Prot
Match: RLP7_DEBHA (Ribosome biogenesis protein RLP7 OS=Debaryomyces hansenii GN=RLP7 PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 4.184e-20
Identity = 58/136 (42.65%), Postives = 84/136 (61.76%), Query Frame = -1
Query:  378 AKLLFIIRI----RGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGY-----GKLNKQRIA-LTDNSIIEQAFGQH-GIICMEDLIHEILTVGPHFKEANNFLWPF 752
            AKLLFIIRI    +G+  V  K +K+L LLRL +   GVF+K+  AT+ +L  + PY+  G P+L S+++L  KR        +  + RI  L +N ++E  FG   G IC+EDLIHE+ T+G HFK  +N++ PF
Sbjct:   92 AKLLFIIRIPDHTKGLK-VPSKARKVLHLLRLNRPNTGVFVKLTPATVPLLKLISPYIVAGKPSLNSIRKLFQKRACISVIDEETKEPRITKLDNNGVVEDKFGDDLGCICIEDLIHELATLGEHFKTVSNWILPF 226          
BLAST of CF831991 vs. ExPASy Swiss-Prot
Match: RLP7_PICJA (Ribosome biogenesis protein RLP7 (Fragment) OS=Pichia jadinii GN=RLP7 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.149e-16
Identity = 48/131 (36.64%), Postives = 77/131 (58.78%), Query Frame = -1
Query:  378 LLFIIRIRG-INAVDP-KTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKL------NKQRIALTDNSIIEQAFGQHGIICMEDLIHEILTVGPHFKEANNFLWPF 746
            L  I+R  G + A  P K +K+LQLLRL +I +GVF+K+ +    +L  + PY     P+L++V++L+ KR    +        +++ L DN+++E+  G  GIIC+ED+IHE   +   FK   +FL PF
Sbjct:   32 LYLIVRTPGPVGAKIPSKVQKVLQLLRLNKINSGVFVKLTETVYPLLKLLSPYTVIXQPSLQTVRQLVQKRATVTVTHANDEEPRQVKLNDNNLVEEKLGDEGIICIEDIIHETSHLATTFKTVTHFLDPF 162          
The following BLAST results are available for this feature:
BLAST of CF831991 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RLP7_YEAST3.096e-2346.56Ribosome biogenesis protein RLP7 OS=Saccharomyces ... [more]
RLP7_CANGA7.625e-2240.44Ribosome biogenesis protein RLP7 OS=Candida glabra... [more]
RLP7_KLULA9.959e-2241.79Ribosome biogenesis protein RLP7 OS=Kluyveromyces ... [more]
RL7_ENCCU1.301e-2133.1460S ribosomal protein L7 OS=Encephalitozoon cunicu... [more]
RLP7_ASHGO1.438e-2039.10Ribosome biogenesis protein RLP7 OS=Ashbya gossypi... [more]
RLP7_DEBHA4.184e-2042.65Ribosome biogenesis protein RLP7 OS=Debaryomyces h... [more]
RLP7_PICJA2.149e-1636.64Ribosome biogenesis protein RLP7 (Fragment) OS=Pic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C04_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831991 ID=CF831991; Name=CF831991; organism=Citrus sinensis; type=EST; length=791bp
TTTTTTTTTTTTTTTTTAATTAAAAACAGATCCGCCACTTCCTTAAATGA
AACTAAAACACGTGAAAACAAAAAATAAAATTCCCAATGATAATCCAGAT
CTGAAGCCAAAATAACAACACTGTCACTGTTATAAAAAGTAAAAAAGTTT
CTACTTAACTTCCAGGGAAAAGGCTGGGAATAATAGGAAACACTAAAAGC
CAAAATTTAAGATATTGATCACATCAAAACTTCTTCAAAAGGGGTAGGAT
ATTCTGCAAAAGCCTAGTTCATCCTTCTGATGAGCTCATTGATGTAATCT
TCACGGTTTCCTGCATCACCGCCTTCAACATAGTGGTTCCTCTTCTTCTT
CAGGCCACCCAATGGTGCCTTGAGCTTGAAGGGCCATAGGAAGTTGTTTG
CCTCCTTGAAGTGAGGACCAACAGTCAAAATCTCATGGATGAGATCTTCC
ATGCAGATAATTCCATGCTGCCCAAAAGCCTGTTCGATGATAGAATTGTC
GGTCAAAGCAATCCTCTGCTTATTTAATTTGCCGTAACCCCTCTTGTAAA
TCAGTTCTTTGACACTCTTTAAATTGGGGTACCCATATGTTACATAGGGC
TCAACTCTGTGCAACATATTGAGTGTGGCTTTGTTCACTTTCAAAAAAAC
ACCATTAAAAATCTGTCTCAAACGGAGAAGCTGCAAAATTTTCTTGGTCT
TTGGATCAACAGCATTGATACCGCGAATCCTGATAATGAACAAAAGCTTA
GCTTCTGGGTTGACATAAAATCCACCCTTAAGCTTGGCCTC
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