CF831998
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_GLUDA (50S ribosomal protein L19 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rplS PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.706e-18 Identity = 45/106 (42.45%), Postives = 72/106 (67.92%), Query Frame = 1 Query: 379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693 +I+Q + + + + + RE+P+ PG V++ V + E +R R+ +G+VIAR N G+++ F +R++ G GVE +FPLY+P I EIKV+ + VRRAKLYYLR + Sbjct: 2 NIIQQYEADEIARLSAAREVPEFGPGDTVRVSVRVVEGERKRIQAYEGVVIARSNKGLNSNFTVRKISNGEGVERVFPLYAPTIAEIKVVRRGAVRRAKLYYLRGR 107
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_RHOCS (50S ribosomal protein L19 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rplS PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.534e-18 Identity = 47/106 (44.34%), Postives = 73/106 (68.87%), Query Frame = 1 Query: 379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693 +I+Q L++E V + + + IP PG V++ V + E R RV +G+VIAR+NAG++++F +R++ G GVE +FPLYSP I ++++ K VRRAKLYYLR + Sbjct: 2 NILQQLEQEQVAKLTAGKTIPAFSPGDTVRVNVKVVEGTRERVQAYEGVVIARKNAGLNSSFTVRKISYGEGVERVFPLYSPRIDSVELVRKGDVRRAKLYYLRGR 107
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_BEII9 (50S ribosomal protein L19 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplS PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.534e-18 Identity = 47/106 (44.34%), Postives = 71/106 (66.98%), Query Frame = 1 Query: 379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693 +I++ L+ E + ++R IP +PG V + V + E +R RV +G+ IAR G++ +F +R++ G GVE +FP+YSPNI IKV+ + KVRRAKLYYLRD+ Sbjct: 2 NIIETLEAEQAAKLLAKRPIPAFQPGDTVIVNVKVKEGERTRVQAYEGVCIARNGGGLNESFTVRKISYGEGVERVFPIYSPNIDSIKVVRRGKVRRAKLYYLRDR 107
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_BACST (50S ribosomal protein L19 OS=Bacillus stearothermophilus GN=rplS PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.534e-18 Identity = 46/105 (43.81%), Postives = 72/105 (68.57%), Query Frame = 1 Query: 379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690 H++Q + KE + ++PD +PG V++ V + E N+ R+ +G+VI RR AGIS TF +R++ GVGVE FP+++P I +++V+ + KVRRAKLYYLR+ Sbjct: 3 HLIQEITKEQLRT-----DLPDFRPGDTVRVHVKVVEGNRERIQVFEGVVIKRRGAGISETFTVRKVSYGVGVERTFPVHTPKIAKLEVIRRGKVRRAKLYYLRE 102
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_ANATD (50S ribosomal protein L19 OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=rplS PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.534e-18 Identity = 45/97 (46.39%), Postives = 69/97 (71.13%), Query Frame = 1 Query: 409 VENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 696 +E+ +++IPD KPG V++ VI + RV +G+VI RR G+S TF +RR+ G+GVE +FPL+SP + +I+V+ + KVRRAKLYY+R+K+ Sbjct: 7 IESEMLRKDIPDFKPGDTVRVYFKVIEGGRERVQAFEGLVIKRRGKGLSETFTVRRISYGIGVERVFPLHSPRLEKIEVIRRGKVRRAKLYYIREKI 103
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_THESQ (50S ribosomal protein L19 OS=Thermotoga sp. (strain RQ2) GN=rplS PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 4.616e-18 Identity = 51/114 (44.74%), Postives = 80/114 (70.18%), Query Frame = 1 Query: 379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVA-GVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKLNPLRNK 714 H+++I++K+ ++EIPD +PG V++ V VI ++ R +GIVIA+R +GI+ TF +RR+ + GVGVE +FP++SP + +I+V+ K KVRRAKLYYLR+ +R K Sbjct: 3 HLVKIIEKKY-----EKKEIPDFRPGDTVRVHVKVIEGDRERTQVFEGIVIAKRGSGINKTFTVRRIGSHGVGVERIFPVHSPVVEKIEVVRKGKVRRAKLYYLRNVRGKIRIK 111
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_THEP1 (50S ribosomal protein L19 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rplS PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 4.616e-18 Identity = 51/114 (44.74%), Postives = 80/114 (70.18%), Query Frame = 1 Query: 379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVA-GVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKLNPLRNK 714 H+++I++K+ ++EIPD +PG V++ V VI ++ R +GIVIA+R +GI+ TF +RR+ + GVGVE +FP++SP + +I+V+ K KVRRAKLYYLR+ +R K Sbjct: 3 HLVKIIEKKY-----EKKEIPDFRPGDTVRVHVKVIEGDRERTQVFEGIVIAKRGSGINKTFTVRRIGSHGVGVERIFPVHSPVVEKIEVVRKGKVRRAKLYYLRNVRGKIRIK 111
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_THEMA (50S ribosomal protein L19 OS=Thermotoga maritima GN=rplS PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 4.616e-18 Identity = 51/114 (44.74%), Postives = 80/114 (70.18%), Query Frame = 1 Query: 379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVA-GVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKLNPLRNK 714 H+++I++K+ ++EIPD +PG V++ V VI ++ R +GIVIA+R +GI+ TF +RR+ + GVGVE +FP++SP + +I+V+ K KVRRAKLYYLR+ +R K Sbjct: 3 HLVKIIEKKY-----EKKEIPDFRPGDTVRVHVKVIEGDRERTQVFEGIVIAKRGSGINKTFTVRRIGSHGVGVERIFPVHSPVVEKIEVVRKGKVRRAKLYYLRNVRGKIRIK 111
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_CLOTH (50S ribosomal protein L19 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=rplS PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 4.616e-18 Identity = 43/99 (43.43%), Postives = 71/99 (71.72%), Query Frame = 1 Query: 403 EAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 696 +A+E + ++++PD G V++ V + E N+ R+ +G VIA++ +GIS TF +R++ GVGVE +FP++SP + I+V+ K KVRRAKLYYLR+++ Sbjct: 5 KAIEQEQLKKDVPDFSIGDYVRVNVKVKEGNRERIQAFEGTVIAKKGSGISETFTVRKISYGVGVERIFPVHSPRVAGIEVIRKGKVRRAKLYYLRERV 103
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_GEOSW (50S ribosomal protein L19 OS=Geobacillus sp. (strain WCH70) GN=rplS PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 6.028e-18 Identity = 47/104 (45.19%), Postives = 71/104 (68.27%), Query Frame = 1 Query: 379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687 H++Q + KE + ++PD +PG V++ V VI N+ R+ +G+VI RR AGIS TF +R++ GVGVE FP+++P I +++V+ + KVRRAKLYYLR Sbjct: 4 HLIQEITKEQLRT-----DLPDFRPGDTVRVHVKVIEGNRERIQVFEGVVIKRRGAGISETFTVRKVSYGVGVERTFPVHTPKIAKLEVVRRGKVRRAKLYYLR 102 The following BLAST results are available for this feature:
BLAST of CF831998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF831998 ID=CF831998; Name=CF831998; organism=Citrus sinensis; type=EST; length=741bpback to top |