CF831998

Overview
NameCF831998
Unique NameCF831998
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_GLUDA (50S ribosomal protein L19 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rplS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.706e-18
Identity = 45/106 (42.45%), Postives = 72/106 (67.92%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            +I+Q  + + +  + + RE+P+  PG  V++ V + E +R R+   +G+VIAR N G+++ F +R++  G GVE +FPLY+P I EIKV+ +  VRRAKLYYLR +
Sbjct:    2 NIIQQYEADEIARLSAAREVPEFGPGDTVRVSVRVVEGERKRIQAYEGVVIARSNKGLNSNFTVRKISNGEGVERVFPLYAPTIAEIKVVRRGAVRRAKLYYLRGR 107          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_RHOCS (50S ribosomal protein L19 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rplS PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.534e-18
Identity = 47/106 (44.34%), Postives = 73/106 (68.87%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            +I+Q L++E V  + + + IP   PG  V++ V + E  R RV   +G+VIAR+NAG++++F +R++  G GVE +FPLYSP I  ++++ K  VRRAKLYYLR +
Sbjct:    2 NILQQLEQEQVAKLTAGKTIPAFSPGDTVRVNVKVVEGTRERVQAYEGVVIARKNAGLNSSFTVRKISYGEGVERVFPLYSPRIDSVELVRKGDVRRAKLYYLRGR 107          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_BEII9 (50S ribosomal protein L19 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplS PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.534e-18
Identity = 47/106 (44.34%), Postives = 71/106 (66.98%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            +I++ L+ E    + ++R IP  +PG  V + V + E +R RV   +G+ IAR   G++ +F +R++  G GVE +FP+YSPNI  IKV+ + KVRRAKLYYLRD+
Sbjct:    2 NIIETLEAEQAAKLLAKRPIPAFQPGDTVIVNVKVKEGERTRVQAYEGVCIARNGGGLNESFTVRKISYGEGVERVFPIYSPNIDSIKVVRRGKVRRAKLYYLRDR 107          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_BACST (50S ribosomal protein L19 OS=Bacillus stearothermophilus GN=rplS PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.534e-18
Identity = 46/105 (43.81%), Postives = 72/105 (68.57%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690
            H++Q + KE +       ++PD +PG  V++ V + E N+ R+   +G+VI RR AGIS TF +R++  GVGVE  FP+++P I +++V+ + KVRRAKLYYLR+
Sbjct:    3 HLIQEITKEQLRT-----DLPDFRPGDTVRVHVKVVEGNRERIQVFEGVVIKRRGAGISETFTVRKVSYGVGVERTFPVHTPKIAKLEVIRRGKVRRAKLYYLRE 102          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_ANATD (50S ribosomal protein L19 OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=rplS PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.534e-18
Identity = 45/97 (46.39%), Postives = 69/97 (71.13%), Query Frame = 1
Query:  409 VENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 696
            +E+   +++IPD KPG  V++   VI   + RV   +G+VI RR  G+S TF +RR+  G+GVE +FPL+SP + +I+V+ + KVRRAKLYY+R+K+
Sbjct:    7 IESEMLRKDIPDFKPGDTVRVYFKVIEGGRERVQAFEGLVIKRRGKGLSETFTVRRISYGIGVERVFPLHSPRLEKIEVIRRGKVRRAKLYYIREKI 103          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_THESQ (50S ribosomal protein L19 OS=Thermotoga sp. (strain RQ2) GN=rplS PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.616e-18
Identity = 51/114 (44.74%), Postives = 80/114 (70.18%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVA-GVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKLNPLRNK 714
            H+++I++K+       ++EIPD +PG  V++ V VI  ++ R    +GIVIA+R +GI+ TF +RR+ + GVGVE +FP++SP + +I+V+ K KVRRAKLYYLR+    +R K
Sbjct:    3 HLVKIIEKKY-----EKKEIPDFRPGDTVRVHVKVIEGDRERTQVFEGIVIAKRGSGINKTFTVRRIGSHGVGVERIFPVHSPVVEKIEVVRKGKVRRAKLYYLRNVRGKIRIK 111          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_THEP1 (50S ribosomal protein L19 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rplS PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.616e-18
Identity = 51/114 (44.74%), Postives = 80/114 (70.18%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVA-GVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKLNPLRNK 714
            H+++I++K+       ++EIPD +PG  V++ V VI  ++ R    +GIVIA+R +GI+ TF +RR+ + GVGVE +FP++SP + +I+V+ K KVRRAKLYYLR+    +R K
Sbjct:    3 HLVKIIEKKY-----EKKEIPDFRPGDTVRVHVKVIEGDRERTQVFEGIVIAKRGSGINKTFTVRRIGSHGVGVERIFPVHSPVVEKIEVVRKGKVRRAKLYYLRNVRGKIRIK 111          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_THEMA (50S ribosomal protein L19 OS=Thermotoga maritima GN=rplS PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.616e-18
Identity = 51/114 (44.74%), Postives = 80/114 (70.18%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVA-GVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKLNPLRNK 714
            H+++I++K+       ++EIPD +PG  V++ V VI  ++ R    +GIVIA+R +GI+ TF +RR+ + GVGVE +FP++SP + +I+V+ K KVRRAKLYYLR+    +R K
Sbjct:    3 HLVKIIEKKY-----EKKEIPDFRPGDTVRVHVKVIEGDRERTQVFEGIVIAKRGSGINKTFTVRRIGSHGVGVERIFPVHSPVVEKIEVVRKGKVRRAKLYYLRNVRGKIRIK 111          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_CLOTH (50S ribosomal protein L19 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=rplS PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.616e-18
Identity = 43/99 (43.43%), Postives = 71/99 (71.72%), Query Frame = 1
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 696
            +A+E  + ++++PD   G  V++ V + E N+ R+   +G VIA++ +GIS TF +R++  GVGVE +FP++SP +  I+V+ K KVRRAKLYYLR+++
Sbjct:    5 KAIEQEQLKKDVPDFSIGDYVRVNVKVKEGNRERIQAFEGTVIAKKGSGISETFTVRKISYGVGVERIFPVHSPRVAGIEVIRKGKVRRAKLYYLRERV 103          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_GEOSW (50S ribosomal protein L19 OS=Geobacillus sp. (strain WCH70) GN=rplS PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.028e-18
Identity = 47/104 (45.19%), Postives = 71/104 (68.27%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            H++Q + KE +       ++PD +PG  V++ V VI  N+ R+   +G+VI RR AGIS TF +R++  GVGVE  FP+++P I +++V+ + KVRRAKLYYLR
Sbjct:    4 HLIQEITKEQLRT-----DLPDFRPGDTVRVHVKVIEGNRERIQVFEGVVIKRRGAGISETFTVRKVSYGVGVERTFPVHTPKIAKLEVVRRGKVRRAKLYYLR 102          
The following BLAST results are available for this feature:
BLAST of CF831998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL19_GLUDA2.706e-1842.4550S ribosomal protein L19 OS=Gluconacetobacter dia... [more]
RL19_RHOCS3.534e-1844.3450S ribosomal protein L19 OS=Rhodospirillum centen... [more]
RL19_BEII93.534e-1844.3450S ribosomal protein L19 OS=Beijerinckia indica s... [more]
RL19_BACST3.534e-1843.8150S ribosomal protein L19 OS=Bacillus stearothermo... [more]
RL19_ANATD3.534e-1846.3950S ribosomal protein L19 OS=Anaerocellum thermoph... [more]
RL19_THESQ4.616e-1844.7450S ribosomal protein L19 OS=Thermotoga sp. (strai... [more]
RL19_THEP14.616e-1844.7450S ribosomal protein L19 OS=Thermotoga petrophila... [more]
RL19_THEMA4.616e-1844.7450S ribosomal protein L19 OS=Thermotoga maritima G... [more]
RL19_CLOTH4.616e-1843.4350S ribosomal protein L19 OS=Clostridium thermocel... [more]
RL19_GEOSW6.028e-1845.1950S ribosomal protein L19 OS=Geobacillus sp. (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831998 ID=CF831998; Name=CF831998; organism=Citrus sinensis; type=EST; length=741bp
GGGAGCATCCGATTAATTCAAAGGCATGCCCTTACCAGCTCAAACACTTG
TTCAATCCCAAACGGAGTCGTTTCAACCAAATCTGTCGGTCATTCGTTCC
ATTCTTTCAACAATTTTCTATCCCGCTCGCTCCACTTGTTAGCTACTCGC
TCGCAGGTAAAATATGGCTATCAAACCGAGTCTTGGGGTTCTTCGAACTA
TTACATTAGAACTAGTGGGCCTGGTTTGTTTCCACCAGCAATGATGGAGC
CACATTTTGCCAACAGGTGTATTTCAACATCGGAAAGTTCAGTTGAATCA
GCTTCATATCCTCCTGCTGCTGCTTCCTCTGATTTGGCTCCCCGCATCAA
ATTTAAGAGGCTTGATAAAACTGCCAGGCATATAATGCAGATTCTAGATA
AGGAAGCAGTGGAGAATGTGAAGTCACAGAGGGAGATCCCCGATATAAAG
CCTGGTTATATCGTGCAACTAAAAGTGGTAATTCCAGAGAACAAGAGACG
TGTTTCAACTTTAAAGGGTATTGTTATAGCAAGGCGTAATGCTGGTATAA
GTACTACATTTAGATTGAGGAGGCTGGTAGCAGGGGTTGGAGTCGAATCT
CTTTTCCCTTTGTACTCACCTAATATACTAGAAATAAAGGTGCTGGACAA
GAAGAAAGTGAGGAGGGCCAAGCTTTACTATCTGAGGGATAAGCTGAATC
CACTTAGAAATAAATAAGAAGCTTTATTGGTGGGAGGATTC
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