CF831998

Overview
NameCF831998
Unique NameCF831998
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_CLOTE (50S ribosomal protein L19 OS=Clostridium tetani GN=rplS PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 9.625e-16
Identity = 43/99 (43.43%), Postives = 66/99 (66.67%), Query Frame = 1 
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 696
            +A+E  + + ++P  K G  V++ V I E  R R+   +G VI R+N G+  TF +RRL  GVGVE  FP+ +P + +I+++ K KVRRAKL+YLRD++
Sbjct:    6 KAIEAEQIRTDLPAFKVGDTVKVHVKIKEGTRERIQVFEGTVIKRQNGGLRETFTVRRLAYGVGVERTFPVNAPTVSKIEIVRKGKVRRAKLFYLRDRV 104
[Close]
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_ACIBY (50S ribosomal protein L19 OS=Acinetobacter baumannii (strain AYE) GN=rplS PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.625e-16
Identity = 40/97 (41.24%), Postives = 68/97 (70.10%), Query Frame = 1 
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690
            +A+EN + + ++P+  PG  V ++V + E  R R+   +G+VIA++N G+++ F +R++ +GVGVE +F  +SP + +I+V  +  VRRAKLYYLRD
Sbjct:    9 QAIENSQLKTDLPEFAPGDTVVVQVKVKEGDRERLQAFEGVVIAKKNRGLNSAFTVRKISSGVGVERVFQTHSPVVAKIEVKRRGDVRRAKLYYLRD 105
[Close]
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_ACIBT (50S ribosomal protein L19 OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=rplS PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.625e-16
Identity = 40/97 (41.24%), Postives = 68/97 (70.10%), Query Frame = 1 
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690
            +A+EN + + ++P+  PG  V ++V + E  R R+   +G+VIA++N G+++ F +R++ +GVGVE +F  +SP + +I+V  +  VRRAKLYYLRD
Sbjct:    9 QAIENSQLKTDLPEFAPGDTVVVQVKVKEGDRERLQAFEGVVIAKKNRGLNSAFTVRKISSGVGVERVFQTHSPVVAKIEVKRRGDVRRAKLYYLRD 105
[Close]
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_ACIBS (50S ribosomal protein L19 OS=Acinetobacter baumannii (strain SDF) GN=rplS PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.625e-16
Identity = 40/97 (41.24%), Postives = 68/97 (70.10%), Query Frame = 1 
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690
            +A+EN + + ++P+  PG  V ++V + E  R R+   +G+VIA++N G+++ F +R++ +GVGVE +F  +SP + +I+V  +  VRRAKLYYLRD
Sbjct:    9 QAIENSQLKTDLPEFAPGDTVVVQVKVKEGDRERLQAFEGVVIAKKNRGLNSAFTVRKISSGVGVERVFQTHSPVVAKIEVKRRGDVRRAKLYYLRD 105
[Close]
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_ACIBC (50S ribosomal protein L19 OS=Acinetobacter baumannii (strain ACICU) GN=rplS PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.625e-16
Identity = 40/97 (41.24%), Postives = 68/97 (70.10%), Query Frame = 1 
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690
            +A+EN + + ++P+  PG  V ++V + E  R R+   +G+VIA++N G+++ F +R++ +GVGVE +F  +SP + +I+V  +  VRRAKLYYLRD
Sbjct:    9 QAIENSQLKTDLPEFAPGDTVVVQVKVKEGDRERLQAFEGVVIAKKNRGLNSAFTVRKISSGVGVERVFQTHSPVVAKIEVKRRGDVRRAKLYYLRD 105
[Close]
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_ACIB5 (50S ribosomal protein L19 OS=Acinetobacter baumannii (strain AB0057) GN=rplS PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.625e-16
Identity = 40/97 (41.24%), Postives = 68/97 (70.10%), Query Frame = 1 
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690
            +A+EN + + ++P+  PG  V ++V + E  R R+   +G+VIA++N G+++ F +R++ +GVGVE +F  +SP + +I+V  +  VRRAKLYYLRD
Sbjct:    9 QAIENSQLKTDLPEFAPGDTVVVQVKVKEGDRERLQAFEGVVIAKKNRGLNSAFTVRKISSGVGVERVFQTHSPVVAKIEVKRRGDVRRAKLYYLRD 105
[Close]
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_ACIB3 (50S ribosomal protein L19 OS=Acinetobacter baumannii (strain AB307-0294) GN=rplS PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.625e-16
Identity = 40/97 (41.24%), Postives = 68/97 (70.10%), Query Frame = 1 
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690
            +A+EN + + ++P+  PG  V ++V + E  R R+   +G+VIA++N G+++ F +R++ +GVGVE +F  +SP + +I+V  +  VRRAKLYYLRD
Sbjct:    9 QAIENSQLKTDLPEFAPGDTVVVQVKVKEGDRERLQAFEGVVIAKKNRGLNSAFTVRKISSGVGVERVFQTHSPVVAKIEVKRRGDVRRAKLYYLRD 105
[Close]
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_THEFY (50S ribosomal protein L19 OS=Thermobifida fusca (strain YX) GN=rplS PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.257e-15
Identity = 40/97 (41.24%), Postives = 66/97 (68.04%), Query Frame = 1 
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690
            + +E  + + ++PD +PG  + + V + E N+ R+   KG+VI R+ +GI  TF +R++   VGVE  FP++SP I +I+V+ + +VRRAKLYYLR+
Sbjct:    6 QELEKAQLRSDVPDFRPGDTLNVHVRVTEGNRTRIQVFKGVVIRRQGSGIRETFTVRKISYAVGVERTFPVHSPVIEKIEVVSRGRVRRAKLYYLRN 102
[Close]
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_PROMA (50S ribosomal protein L19 OS=Prochlorococcus marinus GN=rplS PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.257e-15
Identity = 41/96 (42.71%), Postives = 67/96 (69.79%), Query Frame = 1 
Query:  412 ENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 696
            E  + ++++P++  G  V++ V I E NK RV   +G++IA+R+ G++ T  +RR+  GVGVE +F ++SP +  IKV  + KVRRAKL+YLRD++
Sbjct:   53 EKSQQKKKVPEVYVGDTVRVGVRISEGNKERVQPYEGVIIAKRHGGLNQTITVRRIFQGVGVERVFMVHSPQVASIKVERRGKVRRAKLFYLRDRV 148
[Close]
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_PELUB (50S ribosomal protein L19 OS=Pelagibacter ubique GN=rplS PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.257e-15
Identity = 47/110 (42.73%), Postives = 70/110 (63.64%), Query Frame = 1 
Query:  367 KTARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            KT   I Q+     V+ + S+++IPD  PG ++++ V I E K+ R+   +G+ IAR+N  I+++F +R++  G GVE  FPLY   I  I V+   KVRRAKLYYLRD+
Sbjct:    2 KTIEEINQL----NVKKILSEKKIPDFFPGDVIKVGVRITEGKKDRIQYFEGVCIARKNRDINSSFTVRKISFGEGVERTFPLYGTVIDTITVIRHGKVRRAKLYYLRDR 107
The following BLAST results are available for this feature:
BLAST of CF831998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL19_CLOTE9.625e-1643.4350S ribosomal protein L19 OS=Clostridium tetani GN... [more]
RL19_ACIBY9.625e-1641.2450S ribosomal protein L19 OS=Acinetobacter baumann... [more]
RL19_ACIBT9.625e-1641.2450S ribosomal protein L19 OS=Acinetobacter baumann... [more]
RL19_ACIBS9.625e-1641.2450S ribosomal protein L19 OS=Acinetobacter baumann... [more]
RL19_ACIBC9.625e-1641.2450S ribosomal protein L19 OS=Acinetobacter baumann... [more]
RL19_ACIB59.625e-1641.2450S ribosomal protein L19 OS=Acinetobacter baumann... [more]
RL19_ACIB39.625e-1641.2450S ribosomal protein L19 OS=Acinetobacter baumann... [more]
RL19_THEFY1.257e-1541.2450S ribosomal protein L19 OS=Thermobifida fusca (s... [more]
RL19_PROMA1.257e-1542.7150S ribosomal protein L19 OS=Prochlorococcus marin... [more]
RL19_PELUB1.257e-1542.7350S ribosomal protein L19 OS=Pelagibacter ubique G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831998 ID=CF831998; Name=CF831998; organism=Citrus sinensis; type=EST; length=741bp
GGGAGCATCCGATTAATTCAAAGGCATGCCCTTACCAGCTCAAACACTTG
TTCAATCCCAAACGGAGTCGTTTCAACCAAATCTGTCGGTCATTCGTTCC
ATTCTTTCAACAATTTTCTATCCCGCTCGCTCCACTTGTTAGCTACTCGC
TCGCAGGTAAAATATGGCTATCAAACCGAGTCTTGGGGTTCTTCGAACTA
TTACATTAGAACTAGTGGGCCTGGTTTGTTTCCACCAGCAATGATGGAGC
CACATTTTGCCAACAGGTGTATTTCAACATCGGAAAGTTCAGTTGAATCA
GCTTCATATCCTCCTGCTGCTGCTTCCTCTGATTTGGCTCCCCGCATCAA
ATTTAAGAGGCTTGATAAAACTGCCAGGCATATAATGCAGATTCTAGATA
AGGAAGCAGTGGAGAATGTGAAGTCACAGAGGGAGATCCCCGATATAAAG
CCTGGTTATATCGTGCAACTAAAAGTGGTAATTCCAGAGAACAAGAGACG
TGTTTCAACTTTAAAGGGTATTGTTATAGCAAGGCGTAATGCTGGTATAA
GTACTACATTTAGATTGAGGAGGCTGGTAGCAGGGGTTGGAGTCGAATCT
CTTTTCCCTTTGTACTCACCTAATATACTAGAAATAAAGGTGCTGGACAA
GAAGAAAGTGAGGAGGGCCAAGCTTTACTATCTGAGGGATAAGCTGAATC
CACTTAGAAATAAATAAGAAGCTTTATTGGTGGGAGGATTC
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