CF831998
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_CYAP4 (50S ribosomal protein L19 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplS PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 6.028e-18 Identity = 49/109 (44.95%), Postives = 75/109 (68.81%), Query Frame = 1 Query: 373 ARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 696 A+ I++ L+ E +++ +P+I G V++ V+I E NK R +GIVIA+RN+GI+ T +RR+ GVGVE +F L+SP + IK++ + KVRRAKLYYLRD++ Sbjct: 3 AQEIIRSLEAEQLKS-----NLPEIHVGDTVKVGVIIQEGNKERTQPYEGIVIAKRNSGINATITVRRIFQGVGVERVFLLHSPRVESIKIIKRGKVRRAKLYYLRDRV 106
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_MOOTA (50S ribosomal protein L19 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplS PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.028e-17 Identity = 45/99 (45.45%), Postives = 68/99 (68.69%), Query Frame = 1 Query: 403 EAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 696 E +E + + +IPD +PG V++ V + E N+ R+ +G+VI RR GI+ TF +RR+ GV VE +FPL+SP + I+V+ KVRRAKLYYLR+++ Sbjct: 5 ETLEKEQLRTDIPDFRPGDTVRVHVKVVEGNRERIQIFEGVVIGRRGRGINETFTVRRVSYGVAVERIFPLHSPRLERIEVVRHGKVRRAKLYYLRERV 103
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_XANP2 (50S ribosomal protein L19 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rplS PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.343e-17 Identity = 46/106 (43.40%), Postives = 70/106 (66.04%), Query Frame = 1 Query: 379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693 +I+Q L+ E + +R IPD +PG + + V + E +R RV +G+ IAR G++ +F +R++ G GVE +FP+Y+P I IKV+ + KVRRAKLYYLRD+ Sbjct: 2 NIIQTLEAEQAAKLAEKRAIPDFQPGDTIIVNVKVVEGERSRVQAYEGVCIARSGGGLNESFTVRKISYGEGVERVFPVYAPLIDSIKVVRRGKVRRAKLYYLRDR 107
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_GRABC (50S ribosomal protein L19 OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rplS PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.343e-17 Identity = 44/106 (41.51%), Postives = 70/106 (66.04%), Query Frame = 1 Query: 379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693 +I+Q + E + + S+R +P+ PG +++ V + E +R R +G+ IAR N G+++ F +R++ G GVE +FPLYSP I EI+V+ + VRRAKLYYLR + Sbjct: 2 NIIQTFEAEQIARLVSERPVPEFVPGDTLRVLVKVVEGERTRTQAFEGVCIARSNRGVNSNFTIRKISYGEGVERVFPLYSPTIAEIQVVRRGDVRRAKLYYLRGR 107
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_RHIEC (50S ribosomal protein L19 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rplS PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.754e-17 Identity = 44/106 (41.51%), Postives = 69/106 (65.09%), Query Frame = 1 Query: 379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693 +I+Q L+ E ++++R +P+ PG V++ V + E N+ RV +G+ IAR G+ F +R++ G GVE +FP+YSP I + V+ + KVRRAKLYYLRD+ Sbjct: 2 NIIQQLEAEQAAKIEAKRTLPEFSPGDTVRVNVKVTEGNRTRVQAYEGVCIARSGGGLQENFTVRKISYGEGVERVFPVYSPMIESVDVVRRGKVRRAKLYYLRDR 107
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_RHIME (50S ribosomal protein L19 OS=Rhizobium meliloti GN=rplS PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.291e-17 Identity = 44/106 (41.51%), Postives = 70/106 (66.04%), Query Frame = 1 Query: 379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693 +I+Q L+ E + ++R +P+ PG V++ V V+ N+ RV +G+ IAR GI+ +F +R++ G GVE +FP+YSP + + V+ + KVRRAKLYYLRD+ Sbjct: 2 NIIQQLEAEQAAKIAAKRTLPEFSPGDTVRVNVRVVEGNRTRVQAYEGVCIARSGGGINESFTVRKISYGEGVERVFPVYSPLVESVDVVRRGKVRRAKLYYLRDR 107
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_RHIE6 (50S ribosomal protein L19 OS=Rhizobium etli (strain CIAT 652) GN=rplS PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.291e-17 Identity = 44/106 (41.51%), Postives = 69/106 (65.09%), Query Frame = 1 Query: 379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693 +I+Q L+ E ++++R +P+ PG V++ V + E N+ RV +G+ IAR G+ F +R++ G GVE +FP+YSP I + V+ + KVRRAKLYYLRD+ Sbjct: 2 NIIQQLEAEQAAKIEAKRTLPEFSPGDTVRVNVKVTEGNRTRVQAYEGVCIARSGGGLQENFTVRKISYGEGVERVFPVYSPLIESVDVVRRGKVRRAKLYYLRDR 107
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_FERNB (50S ribosomal protein L19 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=rplS PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.291e-17 Identity = 47/106 (44.34%), Postives = 76/106 (71.70%), Query Frame = 1 Query: 379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAG-VGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690 +I++I++K + +E+P+ +PG V++ V + E +K R+ +G+VI+ R +GIS TF +RR+ AG +GVE +FPLY+P I +I+V+ + +VRRAKLYYLRD Sbjct: 5 NIVRIIEKSQL------KEVPEFRPGDTVRVHVKVKEGDKERIQAYEGVVISIRGSGISKTFTVRRISAGGIGVERIFPLYAPTIDKIEVVRRGRVRRAKLYYLRD 104
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_CORJK (50S ribosomal protein L19 OS=Corynebacterium jeikeium (strain K411) GN=rplS PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.291e-17 Identity = 48/104 (46.15%), Postives = 71/104 (68.27%), Query Frame = 1 Query: 385 MQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693 M ILDK V+ + + +IP+ + G + + V VI +K R+ +G+VI R+N+GI TF +R++ G+GVE FP++SPNI I VL + KVRRAKLYYLR++ Sbjct: 1 MHILDK--VDAAQLRDDIPEFRAGDTLDVHVKVIEGSKSRLQVFRGVVIRRQNSGIRETFTIRKVSFGIGVERTFPVHSPNIDRIDVLSRGKVRRAKLYYLRER 102
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_AGRT5 (50S ribosomal protein L19 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rplS PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.291e-17 Identity = 42/106 (39.62%), Postives = 72/106 (67.92%), Query Frame = 1 Query: 379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693 +I+Q L+ E ++++R +P+ PG +++ V + E N+ RV +G+ IAR G+S +F +R++ G GVE +FP+YSP + ++++ + KVRRAKLYYLRD+ Sbjct: 3 NIIQQLEAEQAAKIEAKRTLPEFSPGDTLRVNVRVTEGNRTRVQAYEGVCIARSGGGLSESFTVRKISYGEGVERVFPIYSPLVEGVEIVRRGKVRRAKLYYLRDR 108 The following BLAST results are available for this feature:
BLAST of CF831998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF831998 ID=CF831998; Name=CF831998; organism=Citrus sinensis; type=EST; length=741bpback to top |