CF831998

Overview
NameCF831998
Unique NameCF831998
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_CYAP4 (50S ribosomal protein L19 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplS PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.028e-18
Identity = 49/109 (44.95%), Postives = 75/109 (68.81%), Query Frame = 1
Query:  373 ARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 696
            A+ I++ L+ E +++      +P+I  G  V++ V+I E NK R    +GIVIA+RN+GI+ T  +RR+  GVGVE +F L+SP +  IK++ + KVRRAKLYYLRD++
Sbjct:    3 AQEIIRSLEAEQLKS-----NLPEIHVGDTVKVGVIIQEGNKERTQPYEGIVIAKRNSGINATITVRRIFQGVGVERVFLLHSPRVESIKIIKRGKVRRAKLYYLRDRV 106          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_MOOTA (50S ribosomal protein L19 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.028e-17
Identity = 45/99 (45.45%), Postives = 68/99 (68.69%), Query Frame = 1
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 696
            E +E  + + +IPD +PG  V++ V + E N+ R+   +G+VI RR  GI+ TF +RR+  GV VE +FPL+SP +  I+V+   KVRRAKLYYLR+++
Sbjct:    5 ETLEKEQLRTDIPDFRPGDTVRVHVKVVEGNRERIQIFEGVVIGRRGRGINETFTVRRVSYGVAVERIFPLHSPRLERIEVVRHGKVRRAKLYYLRERV 103          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_XANP2 (50S ribosomal protein L19 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rplS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.343e-17
Identity = 46/106 (43.40%), Postives = 70/106 (66.04%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            +I+Q L+ E    +  +R IPD +PG  + + V + E +R RV   +G+ IAR   G++ +F +R++  G GVE +FP+Y+P I  IKV+ + KVRRAKLYYLRD+
Sbjct:    2 NIIQTLEAEQAAKLAEKRAIPDFQPGDTIIVNVKVVEGERSRVQAYEGVCIARSGGGLNESFTVRKISYGEGVERVFPVYAPLIDSIKVVRRGKVRRAKLYYLRDR 107          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_GRABC (50S ribosomal protein L19 OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rplS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.343e-17
Identity = 44/106 (41.51%), Postives = 70/106 (66.04%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            +I+Q  + E +  + S+R +P+  PG  +++ V + E +R R    +G+ IAR N G+++ F +R++  G GVE +FPLYSP I EI+V+ +  VRRAKLYYLR +
Sbjct:    2 NIIQTFEAEQIARLVSERPVPEFVPGDTLRVLVKVVEGERTRTQAFEGVCIARSNRGVNSNFTIRKISYGEGVERVFPLYSPTIAEIQVVRRGDVRRAKLYYLRGR 107          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_RHIEC (50S ribosomal protein L19 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rplS PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.754e-17
Identity = 44/106 (41.51%), Postives = 69/106 (65.09%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            +I+Q L+ E    ++++R +P+  PG  V++ V + E N+ RV   +G+ IAR   G+   F +R++  G GVE +FP+YSP I  + V+ + KVRRAKLYYLRD+
Sbjct:    2 NIIQQLEAEQAAKIEAKRTLPEFSPGDTVRVNVKVTEGNRTRVQAYEGVCIARSGGGLQENFTVRKISYGEGVERVFPVYSPMIESVDVVRRGKVRRAKLYYLRDR 107          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_RHIME (50S ribosomal protein L19 OS=Rhizobium meliloti GN=rplS PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.291e-17
Identity = 44/106 (41.51%), Postives = 70/106 (66.04%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            +I+Q L+ E    + ++R +P+  PG  V++ V V+  N+ RV   +G+ IAR   GI+ +F +R++  G GVE +FP+YSP +  + V+ + KVRRAKLYYLRD+
Sbjct:    2 NIIQQLEAEQAAKIAAKRTLPEFSPGDTVRVNVRVVEGNRTRVQAYEGVCIARSGGGINESFTVRKISYGEGVERVFPVYSPLVESVDVVRRGKVRRAKLYYLRDR 107          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_RHIE6 (50S ribosomal protein L19 OS=Rhizobium etli (strain CIAT 652) GN=rplS PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.291e-17
Identity = 44/106 (41.51%), Postives = 69/106 (65.09%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            +I+Q L+ E    ++++R +P+  PG  V++ V + E N+ RV   +G+ IAR   G+   F +R++  G GVE +FP+YSP I  + V+ + KVRRAKLYYLRD+
Sbjct:    2 NIIQQLEAEQAAKIEAKRTLPEFSPGDTVRVNVKVTEGNRTRVQAYEGVCIARSGGGLQENFTVRKISYGEGVERVFPVYSPLIESVDVVRRGKVRRAKLYYLRDR 107          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_FERNB (50S ribosomal protein L19 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=rplS PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.291e-17
Identity = 47/106 (44.34%), Postives = 76/106 (71.70%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAG-VGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690
            +I++I++K  +      +E+P+ +PG  V++ V + E +K R+   +G+VI+ R +GIS TF +RR+ AG +GVE +FPLY+P I +I+V+ + +VRRAKLYYLRD
Sbjct:    5 NIVRIIEKSQL------KEVPEFRPGDTVRVHVKVKEGDKERIQAYEGVVISIRGSGISKTFTVRRISAGGIGVERIFPLYAPTIDKIEVVRRGRVRRAKLYYLRD 104          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_CORJK (50S ribosomal protein L19 OS=Corynebacterium jeikeium (strain K411) GN=rplS PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.291e-17
Identity = 48/104 (46.15%), Postives = 71/104 (68.27%), Query Frame = 1
Query:  385 MQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            M ILDK  V+  + + +IP+ + G  + + V VI  +K R+   +G+VI R+N+GI  TF +R++  G+GVE  FP++SPNI  I VL + KVRRAKLYYLR++
Sbjct:    1 MHILDK--VDAAQLRDDIPEFRAGDTLDVHVKVIEGSKSRLQVFRGVVIRRQNSGIRETFTIRKVSFGIGVERTFPVHSPNIDRIDVLSRGKVRRAKLYYLRER 102          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_AGRT5 (50S ribosomal protein L19 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rplS PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.291e-17
Identity = 42/106 (39.62%), Postives = 72/106 (67.92%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            +I+Q L+ E    ++++R +P+  PG  +++ V + E N+ RV   +G+ IAR   G+S +F +R++  G GVE +FP+YSP +  ++++ + KVRRAKLYYLRD+
Sbjct:    3 NIIQQLEAEQAAKIEAKRTLPEFSPGDTLRVNVRVTEGNRTRVQAYEGVCIARSGGGLSESFTVRKISYGEGVERVFPIYSPLVEGVEIVRRGKVRRAKLYYLRDR 108          
The following BLAST results are available for this feature:
BLAST of CF831998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL19_CYAP46.028e-1844.9550S ribosomal protein L19 OS=Cyanothece sp. (strai... [more]
RL19_MOOTA1.028e-1745.4550S ribosomal protein L19 OS=Moorella thermoacetic... [more]
RL19_XANP21.343e-1743.4050S ribosomal protein L19 OS=Xanthobacter autotrop... [more]
RL19_GRABC1.343e-1741.5150S ribosomal protein L19 OS=Granulibacter bethesd... [more]
RL19_RHIEC1.754e-1741.5150S ribosomal protein L19 OS=Rhizobium etli (strai... [more]
RL19_RHIME2.291e-1741.5150S ribosomal protein L19 OS=Rhizobium meliloti GN... [more]
RL19_RHIE62.291e-1741.5150S ribosomal protein L19 OS=Rhizobium etli (strai... [more]
RL19_FERNB2.291e-1744.3450S ribosomal protein L19 OS=Fervidobacterium nodo... [more]
RL19_CORJK2.291e-1746.1550S ribosomal protein L19 OS=Corynebacterium jeike... [more]
RL19_AGRT52.291e-1739.6250S ribosomal protein L19 OS=Agrobacterium tumefac... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831998 ID=CF831998; Name=CF831998; organism=Citrus sinensis; type=EST; length=741bp
GGGAGCATCCGATTAATTCAAAGGCATGCCCTTACCAGCTCAAACACTTG
TTCAATCCCAAACGGAGTCGTTTCAACCAAATCTGTCGGTCATTCGTTCC
ATTCTTTCAACAATTTTCTATCCCGCTCGCTCCACTTGTTAGCTACTCGC
TCGCAGGTAAAATATGGCTATCAAACCGAGTCTTGGGGTTCTTCGAACTA
TTACATTAGAACTAGTGGGCCTGGTTTGTTTCCACCAGCAATGATGGAGC
CACATTTTGCCAACAGGTGTATTTCAACATCGGAAAGTTCAGTTGAATCA
GCTTCATATCCTCCTGCTGCTGCTTCCTCTGATTTGGCTCCCCGCATCAA
ATTTAAGAGGCTTGATAAAACTGCCAGGCATATAATGCAGATTCTAGATA
AGGAAGCAGTGGAGAATGTGAAGTCACAGAGGGAGATCCCCGATATAAAG
CCTGGTTATATCGTGCAACTAAAAGTGGTAATTCCAGAGAACAAGAGACG
TGTTTCAACTTTAAAGGGTATTGTTATAGCAAGGCGTAATGCTGGTATAA
GTACTACATTTAGATTGAGGAGGCTGGTAGCAGGGGTTGGAGTCGAATCT
CTTTTCCCTTTGTACTCACCTAATATACTAGAAATAAAGGTGCTGGACAA
GAAGAAAGTGAGGAGGGCCAAGCTTTACTATCTGAGGGATAAGCTGAATC
CACTTAGAAATAAATAAGAAGCTTTATTGGTGGGAGGATTC
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