CF831998

Overview
NameCF831998
Unique NameCF831998
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_RHIL3 (50S ribosomal protein L19 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=rplS PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.992e-17
Identity = 44/106 (41.51%), Postives = 68/106 (64.15%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            +I+Q L+ E    ++++R +P+  PG  V++ V + E  R RV   +G+ IAR   G+   F +R++  G GVE +FP+YSP I  + V+ + KVRRAKLYYLRD+
Sbjct:    2 NIIQQLEAEQAAKIEAKRTLPEFSPGDTVRVNVKVTEGTRTRVQAYEGVCIARSGGGLQENFTVRKISYGEGVERVFPIYSPMIESVDVVRRGKVRRAKLYYLRDR 107          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_MARMM (50S ribosomal protein L19 OS=Maricaulis maris (strain MCS10) GN=rplS PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.992e-17
Identity = 43/106 (40.57%), Postives = 71/106 (66.98%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            ++++ L++E    V  ++ IPD   G  +++ V I E +R R+   +G+ IAR   G++ ++ +R++  G GVE +FPLYSPN+ +I++  K KVRRAKLYYLRD+
Sbjct:    2 NMIEQLEQEEAARVLGEKTIPDFSAGDTLRVHVRIKEGERERIQVFEGVCIARNGGGLNESYTVRKISFGEGVERVFPLYSPNVEQIEIKRKGKVRRAKLYYLRDR 107          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_THEYD (50S ribosomal protein L19 OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=rplS PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.908e-17
Identity = 46/97 (47.42%), Postives = 66/97 (68.04%), Query Frame = 1
Query:  406 AVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            A+E    +  IPD KPG  V++ V + E +K R+   +G+VIARR  G+  TF +R++  GVGVE +FPL+SP I +I+++ +  VRRAKLYYLR K
Sbjct:    8 AIEERFKKSNIPDFKPGDTVKVHVKVKEGDKERIQVFEGVVIARRGGGLRETFTVRKISFGVGVERVFPLHSPIIDKIELVRRGDVRRAKLYYLRTK 104          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_PROM9 (50S ribosomal protein L19 OS=Prochlorococcus marinus (strain MIT 9312) GN=rplS PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.103e-17
Identity = 46/99 (46.46%), Postives = 68/99 (68.69%), Query Frame = 1
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 696
            E  EN + ++E+P+I  G  V++ V I E NK RV   +G+VIA+R+ GI  T  +RR+  G+GVE +F L+SP +  +KV  + KVRRAKL+YLRD++
Sbjct:   16 EEFENEQLKKELPEIYVGDTVKVGVRITEGNKERVQPYEGVVIAKRHGGIHQTITVRRIFQGIGVERVFMLHSPQVASLKVERRGKVRRAKLFYLRDRV 114          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_MESSB (50S ribosomal protein L19 OS=Mesorhizobium sp. (strain BNC1) GN=rplS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.103e-17
Identity = 41/105 (39.05%), Postives = 71/105 (67.62%), Query Frame = 1
Query:  382 IMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            +++ L+ E  + + ++R +PD  PG  ++++V + E N+ RV   +G+ IAR  +G+   F +R++  G GVE +FP+YSP +  ++V+ + KVRRAKLYYLRD+
Sbjct:    3 LIRQLEAEQAQKIAAKRTLPDFSPGDTLRVQVRVTEGNRTRVQAFEGVCIARSGSGLQENFTVRKISYGEGVERVFPVYSPLVEAVEVVRRGKVRRAKLYYLRDR 107          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_THEAB (50S ribosomal protein L19 OS=Thermosipho africanus (strain TCF52B) GN=rplS PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.665e-17
Identity = 47/106 (44.34%), Postives = 75/106 (70.75%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVA-GVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690
            ++++I++K+ +      +++P+ +PG  V++ V   E NK R    +GIVI+ R +GIS TF +RR+ A G+GVE +FPLY+P I +I+V+ + KVRRAKLYYLR+
Sbjct:    5 NLVRIIEKDQI------KDVPEFRPGDTVKVYVRFKEGNKERTQAFEGIVISMRGSGISKTFTVRRIGANGIGVERIFPLYAPIIEKIEVVRRGKVRRAKLYYLRE 104          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_SINMW (50S ribosomal protein L19 OS=Sinorhizobium medicae (strain WSM419) GN=rplS PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.665e-17
Identity = 44/106 (41.51%), Postives = 69/106 (65.09%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            +I+Q L+ E    + ++R +P+  PG  V++ V + E  R RV   +G+ IAR   GI+ +F +R++  G GVE +FP+YSP +  + V+ + KVRRAKLYYLRD+
Sbjct:    2 NIIQQLEAEQAAKIAAKRTLPEFSPGDTVRVNVRVVEGTRTRVQAYEGVCIARSGGGINESFTVRKISYGEGVERVFPVYSPLVESVDVVRRGKVRRAKLYYLRDR 107          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_RHOSR (50S ribosomal protein L19 OS=Rhodococcus sp. (strain RHA1) GN=rplS PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.665e-17
Identity = 45/103 (43.69%), Postives = 69/103 (66.99%), Query Frame = 1
Query:  385 MQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690
            +  LDK+++ +     +IP+ +PG  + + V VI  +K RV   KG+VI R+  G+  TF +R++  GVGVE  FP++SPN+ +I+V+ +  VRRAKLYYLRD
Sbjct:    4 LDFLDKKSLRD-----DIPEFRPGDTLNVHVKVIEGSKERVQVFKGVVIRRQGGGVRETFTVRKVSFGVGVERTFPVHSPNLAQIEVVTRGDVRRAKLYYLRD 101          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_RHOOB (50S ribosomal protein L19 OS=Rhodococcus opacus (strain B4) GN=rplS PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.665e-17
Identity = 45/103 (43.69%), Postives = 69/103 (66.99%), Query Frame = 1
Query:  385 MQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690
            +  LDK+++ +     +IP+ +PG  + + V VI  +K RV   KG+VI R+  G+  TF +R++  GVGVE  FP++SPN+ +I+V+ +  VRRAKLYYLRD
Sbjct:    4 LDFLDKKSLRD-----DIPEFRPGDTLNVHVKVIEGSKERVQVFKGVVIRRQGGGVRETFTVRKVSFGVGVERTFPVHSPNLAQIEVVTRGDVRRAKLYYLRD 101          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_OLICO (50S ribosomal protein L19 OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=rplS PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.665e-17
Identity = 45/106 (42.45%), Postives = 69/106 (65.09%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            +++Q L+KE ++ + + + IPD  PG  V + V + E  R RV   +G+ I R   GI+ +F +R++  G GVE +FP+YSP I  IK++ + KVRRAKLYYLR +
Sbjct:    2 NLIQELEKEQLDKLATGKTIPDFGPGDTVTVNVKVKEGDRTRVQAYEGVCIGRNGGGINESFTVRKISYGEGVERVFPIYSPMIDSIKLVRRGKVRRAKLYYLRGR 107          
The following BLAST results are available for this feature:
BLAST of CF831998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL19_RHIL32.992e-1741.5150S ribosomal protein L19 OS=Rhizobium leguminosar... [more]
RL19_MARMM2.992e-1740.5750S ribosomal protein L19 OS=Maricaulis maris (str... [more]
RL19_THEYD3.908e-1747.4250S ribosomal protein L19 OS=Thermodesulfovibrio y... [more]
RL19_PROM95.103e-1746.4650S ribosomal protein L19 OS=Prochlorococcus marin... [more]
RL19_MESSB5.103e-1739.0550S ribosomal protein L19 OS=Mesorhizobium sp. (st... [more]
RL19_THEAB6.665e-1744.3450S ribosomal protein L19 OS=Thermosipho africanus... [more]
RL19_SINMW6.665e-1741.5150S ribosomal protein L19 OS=Sinorhizobium medicae... [more]
RL19_RHOSR6.665e-1743.6950S ribosomal protein L19 OS=Rhodococcus sp. (stra... [more]
RL19_RHOOB6.665e-1743.6950S ribosomal protein L19 OS=Rhodococcus opacus (s... [more]
RL19_OLICO6.665e-1742.4550S ribosomal protein L19 OS=Oligotropha carboxido... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831998 ID=CF831998; Name=CF831998; organism=Citrus sinensis; type=EST; length=741bp
GGGAGCATCCGATTAATTCAAAGGCATGCCCTTACCAGCTCAAACACTTG
TTCAATCCCAAACGGAGTCGTTTCAACCAAATCTGTCGGTCATTCGTTCC
ATTCTTTCAACAATTTTCTATCCCGCTCGCTCCACTTGTTAGCTACTCGC
TCGCAGGTAAAATATGGCTATCAAACCGAGTCTTGGGGTTCTTCGAACTA
TTACATTAGAACTAGTGGGCCTGGTTTGTTTCCACCAGCAATGATGGAGC
CACATTTTGCCAACAGGTGTATTTCAACATCGGAAAGTTCAGTTGAATCA
GCTTCATATCCTCCTGCTGCTGCTTCCTCTGATTTGGCTCCCCGCATCAA
ATTTAAGAGGCTTGATAAAACTGCCAGGCATATAATGCAGATTCTAGATA
AGGAAGCAGTGGAGAATGTGAAGTCACAGAGGGAGATCCCCGATATAAAG
CCTGGTTATATCGTGCAACTAAAAGTGGTAATTCCAGAGAACAAGAGACG
TGTTTCAACTTTAAAGGGTATTGTTATAGCAAGGCGTAATGCTGGTATAA
GTACTACATTTAGATTGAGGAGGCTGGTAGCAGGGGTTGGAGTCGAATCT
CTTTTCCCTTTGTACTCACCTAATATACTAGAAATAAAGGTGCTGGACAA
GAAGAAAGTGAGGAGGGCCAAGCTTTACTATCTGAGGGATAAGCTGAATC
CACTTAGAAATAAATAAGAAGCTTTATTGGTGGGAGGATTC
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