CF831998
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_RHIL3 (50S ribosomal protein L19 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=rplS PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.992e-17 Identity = 44/106 (41.51%), Postives = 68/106 (64.15%), Query Frame = 1 Query: 379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693 +I+Q L+ E ++++R +P+ PG V++ V + E R RV +G+ IAR G+ F +R++ G GVE +FP+YSP I + V+ + KVRRAKLYYLRD+ Sbjct: 2 NIIQQLEAEQAAKIEAKRTLPEFSPGDTVRVNVKVTEGTRTRVQAYEGVCIARSGGGLQENFTVRKISYGEGVERVFPIYSPMIESVDVVRRGKVRRAKLYYLRDR 107
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_MARMM (50S ribosomal protein L19 OS=Maricaulis maris (strain MCS10) GN=rplS PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.992e-17 Identity = 43/106 (40.57%), Postives = 71/106 (66.98%), Query Frame = 1 Query: 379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693 ++++ L++E V ++ IPD G +++ V I E +R R+ +G+ IAR G++ ++ +R++ G GVE +FPLYSPN+ +I++ K KVRRAKLYYLRD+ Sbjct: 2 NMIEQLEQEEAARVLGEKTIPDFSAGDTLRVHVRIKEGERERIQVFEGVCIARNGGGLNESYTVRKISFGEGVERVFPLYSPNVEQIEIKRKGKVRRAKLYYLRDR 107
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_THEYD (50S ribosomal protein L19 OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=rplS PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.908e-17 Identity = 46/97 (47.42%), Postives = 66/97 (68.04%), Query Frame = 1 Query: 406 AVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693 A+E + IPD KPG V++ V + E +K R+ +G+VIARR G+ TF +R++ GVGVE +FPL+SP I +I+++ + VRRAKLYYLR K Sbjct: 8 AIEERFKKSNIPDFKPGDTVKVHVKVKEGDKERIQVFEGVVIARRGGGLRETFTVRKISFGVGVERVFPLHSPIIDKIELVRRGDVRRAKLYYLRTK 104
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_PROM9 (50S ribosomal protein L19 OS=Prochlorococcus marinus (strain MIT 9312) GN=rplS PE=3 SV=2) HSP 1 Score: 88.1965 bits (217), Expect = 5.103e-17 Identity = 46/99 (46.46%), Postives = 68/99 (68.69%), Query Frame = 1 Query: 403 EAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 696 E EN + ++E+P+I G V++ V I E NK RV +G+VIA+R+ GI T +RR+ G+GVE +F L+SP + +KV + KVRRAKL+YLRD++ Sbjct: 16 EEFENEQLKKELPEIYVGDTVKVGVRITEGNKERVQPYEGVVIAKRHGGIHQTITVRRIFQGIGVERVFMLHSPQVASLKVERRGKVRRAKLFYLRDRV 114
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_MESSB (50S ribosomal protein L19 OS=Mesorhizobium sp. (strain BNC1) GN=rplS PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 5.103e-17 Identity = 41/105 (39.05%), Postives = 71/105 (67.62%), Query Frame = 1 Query: 382 IMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693 +++ L+ E + + ++R +PD PG ++++V + E N+ RV +G+ IAR +G+ F +R++ G GVE +FP+YSP + ++V+ + KVRRAKLYYLRD+ Sbjct: 3 LIRQLEAEQAQKIAAKRTLPDFSPGDTLRVQVRVTEGNRTRVQAFEGVCIARSGSGLQENFTVRKISYGEGVERVFPVYSPLVEAVEVVRRGKVRRAKLYYLRDR 107
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_THEAB (50S ribosomal protein L19 OS=Thermosipho africanus (strain TCF52B) GN=rplS PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.665e-17 Identity = 47/106 (44.34%), Postives = 75/106 (70.75%), Query Frame = 1 Query: 379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVA-GVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690 ++++I++K+ + +++P+ +PG V++ V E NK R +GIVI+ R +GIS TF +RR+ A G+GVE +FPLY+P I +I+V+ + KVRRAKLYYLR+ Sbjct: 5 NLVRIIEKDQI------KDVPEFRPGDTVKVYVRFKEGNKERTQAFEGIVISMRGSGISKTFTVRRIGANGIGVERIFPLYAPIIEKIEVVRRGKVRRAKLYYLRE 104
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_SINMW (50S ribosomal protein L19 OS=Sinorhizobium medicae (strain WSM419) GN=rplS PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.665e-17 Identity = 44/106 (41.51%), Postives = 69/106 (65.09%), Query Frame = 1 Query: 379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693 +I+Q L+ E + ++R +P+ PG V++ V + E R RV +G+ IAR GI+ +F +R++ G GVE +FP+YSP + + V+ + KVRRAKLYYLRD+ Sbjct: 2 NIIQQLEAEQAAKIAAKRTLPEFSPGDTVRVNVRVVEGTRTRVQAYEGVCIARSGGGINESFTVRKISYGEGVERVFPVYSPLVESVDVVRRGKVRRAKLYYLRDR 107
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_RHOSR (50S ribosomal protein L19 OS=Rhodococcus sp. (strain RHA1) GN=rplS PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.665e-17 Identity = 45/103 (43.69%), Postives = 69/103 (66.99%), Query Frame = 1 Query: 385 MQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690 + LDK+++ + +IP+ +PG + + V VI +K RV KG+VI R+ G+ TF +R++ GVGVE FP++SPN+ +I+V+ + VRRAKLYYLRD Sbjct: 4 LDFLDKKSLRD-----DIPEFRPGDTLNVHVKVIEGSKERVQVFKGVVIRRQGGGVRETFTVRKVSFGVGVERTFPVHSPNLAQIEVVTRGDVRRAKLYYLRD 101
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_RHOOB (50S ribosomal protein L19 OS=Rhodococcus opacus (strain B4) GN=rplS PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.665e-17 Identity = 45/103 (43.69%), Postives = 69/103 (66.99%), Query Frame = 1 Query: 385 MQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690 + LDK+++ + +IP+ +PG + + V VI +K RV KG+VI R+ G+ TF +R++ GVGVE FP++SPN+ +I+V+ + VRRAKLYYLRD Sbjct: 4 LDFLDKKSLRD-----DIPEFRPGDTLNVHVKVIEGSKERVQVFKGVVIRRQGGGVRETFTVRKVSFGVGVERTFPVHSPNLAQIEVVTRGDVRRAKLYYLRD 101
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_OLICO (50S ribosomal protein L19 OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=rplS PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.665e-17 Identity = 45/106 (42.45%), Postives = 69/106 (65.09%), Query Frame = 1 Query: 379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693 +++Q L+KE ++ + + + IPD PG V + V + E R RV +G+ I R GI+ +F +R++ G GVE +FP+YSP I IK++ + KVRRAKLYYLR + Sbjct: 2 NLIQELEKEQLDKLATGKTIPDFGPGDTVTVNVKVKEGDRTRVQAYEGVCIGRNGGGINESFTVRKISYGEGVERVFPIYSPMIDSIKLVRRGKVRRAKLYYLRGR 107 The following BLAST results are available for this feature:
BLAST of CF831998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF831998 ID=CF831998; Name=CF831998; organism=Citrus sinensis; type=EST; length=741bpback to top |