CF831998

Overview
NameCF831998
Unique NameCF831998
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_STRLI (50S ribosomal protein L19 OS=Streptomyces lividans GN=rplS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.281e-14
Identity = 39/97 (40.21%), Postives = 64/97 (65.98%), Query Frame = 1
Query:  403 EAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690
            ++V+    + ++P  +PG  V + V VI  N+ RV   KG+VI R+ AG+  TF +R++   VGVE  FP+++P + +I+++ +  VRRAKLYYLR+
Sbjct:    6 DSVDAASLRSDVPAFRPGDTVNVHVRVIEGNRSRVQQFKGVVIRRQGAGVRETFTVRKVSFSVGVERTFPVHTPIVEKIELVTRGDVRRAKLYYLRE 102          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_STRGC (50S ribosomal protein L19 OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=rplS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.281e-14
Identity = 39/86 (45.35%), Postives = 59/86 (68.60%), Query Frame = 1
Query:  433 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            +IP  +PG  V++   + E  R R+   +G+VIAR+ AGIS  + +R++  GVGVE  FP+++P + +I+V+   KVRRAKLYYLR
Sbjct:   16 DIPAFRPGDTVRVHAKVVEGTRERIQIFEGVVIARKGAGISENYTVRKISNGVGVERTFPIHTPRVDKIEVVRYGKVRRAKLYYLR 101          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_STRCO (50S ribosomal protein L19 OS=Streptomyces coelicolor GN=rplS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.281e-14
Identity = 39/97 (40.21%), Postives = 64/97 (65.98%), Query Frame = 1
Query:  403 EAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690
            ++V+    + ++P  +PG  V + V VI  N+ RV   KG+VI R+ AG+  TF +R++   VGVE  FP+++P + +I+++ +  VRRAKLYYLR+
Sbjct:    6 DSVDAASLRSDVPAFRPGDTVNVHVRVIEGNRSRVQQFKGVVIRRQGAGVRETFTVRKVSFSVGVERTFPVHTPIVEKIELVTRGDVRRAKLYYLRE 102          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_SILST (50S ribosomal protein L19 OS=Silicibacter sp. (strain TM1040) GN=rplS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.281e-14
Identity = 44/103 (42.72%), Postives = 66/103 (64.08%), Query Frame = 1
Query:  391 ILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRN-AGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            I   EA +     +EIPD K G  +++   + E  R RV   +G+ I+R+N +GI+ +F +R++  G GVE +FPLYS NI  I+V+ + +VRRAKLYYLR +
Sbjct:    4 IAQLEAEQIAALGKEIPDFKAGDTIRVGYKVTEGTRTRVQAYEGVCISRKNGSGIAGSFTVRKISFGEGVERVFPLYSTNIESIEVVRRGRVRRAKLYYLRSR 106          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_MYCLE (50S ribosomal protein L19 OS=Mycobacterium leprae GN=rplS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.281e-14
Identity = 41/95 (43.16%), Postives = 59/95 (62.11%), Query Frame = 1
Query:  409 VENVKSQREIPDIKPGYIVQLKVVIPEN-KRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690
            V+    + +IP   PG  + + V + E  K R+   KG+VI R+  GI  TF +R+   GVGVE  FP++SPNI  I+++ +  VRRAKLYYLR+
Sbjct:    7 VDQASLRDDIPAFSPGDTINVHVKVIEGVKERIQVFKGVVIRRQGGGIRETFTVRKESYGVGVERTFPVHSPNIDHIEMVIRGDVRRAKLYYLRE 101          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_MYCLB (50S ribosomal protein L19 OS=Mycobacterium leprae (strain Br4923) GN=rplS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.281e-14
Identity = 41/95 (43.16%), Postives = 59/95 (62.11%), Query Frame = 1
Query:  409 VENVKSQREIPDIKPGYIVQLKVVIPEN-KRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690
            V+    + +IP   PG  + + V + E  K R+   KG+VI R+  GI  TF +R+   GVGVE  FP++SPNI  I+++ +  VRRAKLYYLR+
Sbjct:    7 VDQASLRDDIPAFSPGDTINVHVKVIEGVKERIQVFKGVVIRRQGGGIRETFTVRKESYGVGVERTFPVHSPNIDHIEMVIRGDVRRAKLYYLRE 101          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_LACRJ (50S ribosomal protein L19 OS=Lactobacillus reuteri (strain JCM 1112) GN=rplS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.281e-14
Identity = 40/88 (45.45%), Postives = 59/88 (67.05%), Query Frame = 1
Query:  433 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            +IP+ + G  V++   I E  R R+   +G+VI R  AGIS T+ +R++  GVGVE  FP++SP + +I VL   +VRRAKLYYLR++
Sbjct:   18 DIPEFRAGDTVRVHARIVEGSRERIQMFEGVVIKRHGAGISATYTVRKISNGVGVERTFPVHSPRVDKIDVLRYGRVRRAKLYYLRER 105          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_LACRD (50S ribosomal protein L19 OS=Lactobacillus reuteri (strain DSM 20016) GN=rplS PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 5.281e-14
Identity = 40/88 (45.45%), Postives = 59/88 (67.05%), Query Frame = 1
Query:  433 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            +IP+ + G  V++   I E  R R+   +G+VI R  AGIS T+ +R++  GVGVE  FP++SP + +I VL   +VRRAKLYYLR++
Sbjct:   18 DIPEFRAGDTVRVHARIVEGSRERIQMFEGVVIKRHGAGISATYTVRKISNGVGVERTFPVHSPRVDKIDVLRYGRVRRAKLYYLRER 105          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_HAES2 (50S ribosomal protein L19 OS=Haemophilus somnus (strain 2336) GN=rplS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.281e-14
Identity = 40/96 (41.67%), Postives = 64/96 (66.67%), Query Frame = 1
Query:  409 VENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            +E  + ++ +P  +PG  +++KV V+  +KRR+   +G+VIA R+ G+ + F LR++  GVGVE +F  +SP I  I V  K  VR+AKLYYLR++
Sbjct:    8 IEQEQLKQNVPSFRPGDTLEVKVWVVEGSKRRLQAFEGVVIAIRHRGLHSAFTLRKISNGVGVERVFQTHSPIIDSITVKRKGAVRKAKLYYLRER 103          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_HAES1 (50S ribosomal protein L19 OS=Haemophilus somnus (strain 129Pt) GN=rplS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.281e-14
Identity = 40/96 (41.67%), Postives = 64/96 (66.67%), Query Frame = 1
Query:  409 VENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            +E  + ++ +P  +PG  +++KV V+  +KRR+   +G+VIA R+ G+ + F LR++  GVGVE +F  +SP I  I V  K  VR+AKLYYLR++
Sbjct:    8 IEQEQLKQNVPSFRPGDTLEVKVWVVEGSKRRLQAFEGVVIAIRHRGLHSAFTLRKISNGVGVERVFQTHSPIIDSITVKRKGAVRKAKLYYLRER 103          
The following BLAST results are available for this feature:
BLAST of CF831998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL19_STRLI5.281e-1440.2150S ribosomal protein L19 OS=Streptomyces lividans... [more]
RL19_STRGC5.281e-1445.3550S ribosomal protein L19 OS=Streptococcus gordoni... [more]
RL19_STRCO5.281e-1440.2150S ribosomal protein L19 OS=Streptomyces coelicol... [more]
RL19_SILST5.281e-1442.7250S ribosomal protein L19 OS=Silicibacter sp. (str... [more]
RL19_MYCLE5.281e-1443.1650S ribosomal protein L19 OS=Mycobacterium leprae ... [more]
RL19_MYCLB5.281e-1443.1650S ribosomal protein L19 OS=Mycobacterium leprae ... [more]
RL19_LACRJ5.281e-1445.4550S ribosomal protein L19 OS=Lactobacillus reuteri... [more]
RL19_LACRD5.281e-1445.4550S ribosomal protein L19 OS=Lactobacillus reuteri... [more]
RL19_HAES25.281e-1441.6750S ribosomal protein L19 OS=Haemophilus somnus (s... [more]
RL19_HAES15.281e-1441.6750S ribosomal protein L19 OS=Haemophilus somnus (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831998 ID=CF831998; Name=CF831998; organism=Citrus sinensis; type=EST; length=741bp
GGGAGCATCCGATTAATTCAAAGGCATGCCCTTACCAGCTCAAACACTTG
TTCAATCCCAAACGGAGTCGTTTCAACCAAATCTGTCGGTCATTCGTTCC
ATTCTTTCAACAATTTTCTATCCCGCTCGCTCCACTTGTTAGCTACTCGC
TCGCAGGTAAAATATGGCTATCAAACCGAGTCTTGGGGTTCTTCGAACTA
TTACATTAGAACTAGTGGGCCTGGTTTGTTTCCACCAGCAATGATGGAGC
CACATTTTGCCAACAGGTGTATTTCAACATCGGAAAGTTCAGTTGAATCA
GCTTCATATCCTCCTGCTGCTGCTTCCTCTGATTTGGCTCCCCGCATCAA
ATTTAAGAGGCTTGATAAAACTGCCAGGCATATAATGCAGATTCTAGATA
AGGAAGCAGTGGAGAATGTGAAGTCACAGAGGGAGATCCCCGATATAAAG
CCTGGTTATATCGTGCAACTAAAAGTGGTAATTCCAGAGAACAAGAGACG
TGTTTCAACTTTAAAGGGTATTGTTATAGCAAGGCGTAATGCTGGTATAA
GTACTACATTTAGATTGAGGAGGCTGGTAGCAGGGGTTGGAGTCGAATCT
CTTTTCCCTTTGTACTCACCTAATATACTAGAAATAAAGGTGCTGGACAA
GAAGAAAGTGAGGAGGGCCAAGCTTTACTATCTGAGGGATAAGCTGAATC
CACTTAGAAATAAATAAGAAGCTTTATTGGTGGGAGGATTC
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