CF831998

Overview
NameCF831998
Unique NameCF831998
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_THELT (50S ribosomal protein L19 OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=rplS PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.897e-14
Identity = 40/97 (41.24%), Postives = 63/97 (64.95%), Query Frame = 1
Query:  430 REIPDIKPGYIVQLKVVIPEN-KRRVSTLKGIVIARRNAGISTTFRLRRLVAG-VGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKLNPLRNK 714
            +++PD +PG  V++ V I E  K R+   +GIVI  R +G+  TF +R++ +G +GVE  FP +SP + +I+++ K   RRAKLYY+RD    +R K
Sbjct:   16 KQLPDFRPGDTVKVHVKIVEGGKERIQIFEGIVIKIRGSGLGKTFTVRKIASGGIGVERTFPYHSPVVQKIEIVKKAVTRRAKLYYIRDIRGKIRLK 112          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_STRSY (50S ribosomal protein L19 OS=Streptococcus suis (strain 05ZYH33) GN=rplS PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.897e-14
Identity = 37/86 (43.02%), Postives = 59/86 (68.60%), Query Frame = 1
Query:  433 EIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            +IP  +PG  V++   + E N+ R+   +G+VI+R+  GIS  + +R++  GVGVE  FP+++P + +I+V+   KVRRAKLYYLR
Sbjct:   16 DIPSFRPGDTVRVHAKVVEGNRERIQIFEGVVISRKGQGISEMYTVRKISGGVGVERTFPIHTPRVDKIEVVRYGKVRRAKLYYLR 101          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_STRS2 (50S ribosomal protein L19 OS=Streptococcus suis (strain 98HAH33) GN=rplS PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.897e-14
Identity = 37/86 (43.02%), Postives = 59/86 (68.60%), Query Frame = 1
Query:  433 EIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            +IP  +PG  V++   + E N+ R+   +G+VI+R+  GIS  + +R++  GVGVE  FP+++P + +I+V+   KVRRAKLYYLR
Sbjct:   16 DIPSFRPGDTVRVHAKVVEGNRERIQIFEGVVISRKGQGISEMYTVRKISGGVGVERTFPIHTPRVDKIEVVRYGKVRRAKLYYLR 101          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_STRMU (50S ribosomal protein L19 OS=Streptococcus mutans GN=rplS PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.897e-14
Identity = 38/86 (44.19%), Postives = 59/86 (68.60%), Query Frame = 1
Query:  433 EIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            +IP+ +PG  V++   + E N+ RV   +G+VI+R+  GIS  + +R++ +GVGVE  FP ++P + +I+V    KVRRAKLYYLR
Sbjct:   16 DIPNFRPGDTVRVHAKVVEGNRERVQIFEGVVISRKGQGISEMYTVRKISSGVGVERTFPTHTPRVEKIEVTRHGKVRRAKLYYLR 101          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_STRE4 (50S ribosomal protein L19 OS=Streptococcus equi subsp. equi (strain 4047) GN=rplS PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.897e-14
Identity = 36/86 (41.86%), Postives = 60/86 (69.77%), Query Frame = 1
Query:  433 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            +IP  +PG  V++   + E  R R+   +G+VI+R++ GIS  + +R++ +G+GVE  FP+++P + +I+V+   KVRRAKLYYLR
Sbjct:   16 DIPSFRPGDTVRVHAKVVEGSRERIQIFEGVVISRKSQGISEMYTVRKISSGIGVERTFPIHTPRVEKIEVVRHGKVRRAKLYYLR 101          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_PASMU (50S ribosomal protein L19 OS=Pasteurella multocida GN=rplS PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.897e-14
Identity = 40/96 (41.67%), Postives = 64/96 (66.67%), Query Frame = 1
Query:  409 VENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            +E  + ++ +P  +PG  +++KV V+  +KRR+   +G+VIA RN G+ + F LR++  GVGVE +F  +SP +  I V  K  VR+AKLYYLR++
Sbjct:    8 LEQEQLKQNLPSFRPGDTLEVKVWVVEGSKRRLQAFEGVVIAIRNRGLHSAFTLRKVSNGVGVERVFQTHSPIVDSITVKRKGAVRQAKLYYLRER 103          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_MYCVP (50S ribosomal protein L19 OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=rplS PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.897e-14
Identity = 40/95 (42.11%), Postives = 59/95 (62.11%), Query Frame = 1
Query:  409 VENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690
            V+    + ++P   PG  V + V VI  +K R+   KG+V+ R+  G+  TF +R+   GVGVE  FP++SPNI  I ++ +  VRRAKLYYLR+
Sbjct:    7 VDQSSLRDDVPAFGPGDTVNVHVKVIEGSKERIQVFKGVVLRRQGGGVRETFTVRKESYGVGVERTFPVHSPNIDHIDIVSRGDVRRAKLYYLRE 101          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_METPP (50S ribosomal protein L19 OS=Methylibium petroleiphilum (strain PM1) GN=rplS PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.897e-14
Identity = 42/105 (40.00%), Postives = 68/105 (64.76%), Query Frame = 1
Query:  382 IMQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            ++Q L++E +  +   + IP   PG  V + V V+   ++R+   +G+VIA+RN G++++F +R++ +G GVE  F LYSP I  I+V  +  VRRAKLYYLR +
Sbjct:    3 LIQTLEQEEIARLN--KTIPAFAPGDTVIVSVNVVEGTRKRLQAYEGVVIAKRNRGLNSSFIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLYYLRQR 105          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_LEUMM (50S ribosomal protein L19 OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=rplS PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.897e-14
Identity = 42/96 (43.75%), Postives = 62/96 (64.58%), Query Frame = 1
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            E V + + + +IP  + G  V++   I E  R RV   +G+VI R+ AGI  T+ +R++ +GVGVE  FPL+SP + +I+V    +VRRAKLYYLR
Sbjct:    8 ENVTSAQLRTDIPAFRAGDTVKVYAKIVEGSRERVQLFEGVVIKRKGAGIQATYTVRKISSGVGVERTFPLHSPRVEKIEVTRFGQVRRAKLYYLR 103          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_LEUCK (50S ribosomal protein L19 OS=Leuconostoc citreum (strain KM20) GN=rplS PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.897e-14
Identity = 40/96 (41.67%), Postives = 63/96 (65.62%), Query Frame = 1
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            E V + + + +IP+ + G  V++   I E  R R+   +G+VI R+ +GI  T+ +R++ +GVGVE  FPL+SP + +I+V+    VRRAKLYYLR
Sbjct:    8 ENVTSAQLRSDIPEFRAGDTVKVYAKIVEGSRERIQLFEGVVIKRKGSGIQATYTVRKISSGVGVERTFPLHSPRVEKIEVVRFGAVRRAKLYYLR 103          
The following BLAST results are available for this feature:
BLAST of CF831998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL19_THELT6.897e-1441.2450S ribosomal protein L19 OS=Thermotoga lettingae ... [more]
RL19_STRSY6.897e-1443.0250S ribosomal protein L19 OS=Streptococcus suis (s... [more]
RL19_STRS26.897e-1443.0250S ribosomal protein L19 OS=Streptococcus suis (s... [more]
RL19_STRMU6.897e-1444.1950S ribosomal protein L19 OS=Streptococcus mutans ... [more]
RL19_STRE46.897e-1441.8650S ribosomal protein L19 OS=Streptococcus equi su... [more]
RL19_PASMU6.897e-1441.6750S ribosomal protein L19 OS=Pasteurella multocida... [more]
RL19_MYCVP6.897e-1442.1150S ribosomal protein L19 OS=Mycobacterium vanbaal... [more]
RL19_METPP6.897e-1440.0050S ribosomal protein L19 OS=Methylibium petroleip... [more]
RL19_LEUMM6.897e-1443.7550S ribosomal protein L19 OS=Leuconostoc mesentero... [more]
RL19_LEUCK6.897e-1441.6750S ribosomal protein L19 OS=Leuconostoc citreum (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831998 ID=CF831998; Name=CF831998; organism=Citrus sinensis; type=EST; length=741bp
GGGAGCATCCGATTAATTCAAAGGCATGCCCTTACCAGCTCAAACACTTG
TTCAATCCCAAACGGAGTCGTTTCAACCAAATCTGTCGGTCATTCGTTCC
ATTCTTTCAACAATTTTCTATCCCGCTCGCTCCACTTGTTAGCTACTCGC
TCGCAGGTAAAATATGGCTATCAAACCGAGTCTTGGGGTTCTTCGAACTA
TTACATTAGAACTAGTGGGCCTGGTTTGTTTCCACCAGCAATGATGGAGC
CACATTTTGCCAACAGGTGTATTTCAACATCGGAAAGTTCAGTTGAATCA
GCTTCATATCCTCCTGCTGCTGCTTCCTCTGATTTGGCTCCCCGCATCAA
ATTTAAGAGGCTTGATAAAACTGCCAGGCATATAATGCAGATTCTAGATA
AGGAAGCAGTGGAGAATGTGAAGTCACAGAGGGAGATCCCCGATATAAAG
CCTGGTTATATCGTGCAACTAAAAGTGGTAATTCCAGAGAACAAGAGACG
TGTTTCAACTTTAAAGGGTATTGTTATAGCAAGGCGTAATGCTGGTATAA
GTACTACATTTAGATTGAGGAGGCTGGTAGCAGGGGTTGGAGTCGAATCT
CTTTTCCCTTTGTACTCACCTAATATACTAGAAATAAAGGTGCTGGACAA
GAAGAAAGTGAGGAGGGCCAAGCTTTACTATCTGAGGGATAAGCTGAATC
CACTTAGAAATAAATAAGAAGCTTTATTGGTGGGAGGATTC
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