CF831998

Overview
NameCF831998
Unique NameCF831998
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_AZOVD (50S ribosomal protein L19 OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=rplS PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.008e-14
Identity = 40/97 (41.24%), Postives = 62/97 (63.92%), Query Frame = 1
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690
            + +E  +  +EIP   PG  V ++V + E +R R+   +G+VI +RN G+++ F +R++ +GVGVE  F  YSP +  I V  +  VR+AKLYYLRD
Sbjct:    7 QQLEAEQMSKEIPAFAPGDTVIVQVKVKEGERQRLQAFEGVVIGKRNRGLNSAFTVRKISSGVGVERTFQTYSPLVDSITVKRRGDVRKAKLYYLRD 103          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_STRPM (50S ribosomal protein L19 OS=Streptococcus pyogenes serotype M28 GN=rplS PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13
Identity = 36/86 (41.86%), Postives = 59/86 (68.60%), Query Frame = 1
Query:  433 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            +IP+ +PG  V++   + E  R R+   +G+VI+R+  GIS  + +R++  G+GVE  FP+++P + +I+V+   KVRRAKLYYLR
Sbjct:   16 DIPNFRPGDTVRVHAKVVEGTRERIQIFEGVVISRKGQGISEMYTVRKISGGIGVERTFPIHTPRVDKIEVIRHGKVRRAKLYYLR 101          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_STRPG (50S ribosomal protein L19 OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=rplS PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13
Identity = 36/86 (41.86%), Postives = 59/86 (68.60%), Query Frame = 1
Query:  433 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            +IP+ +PG  V++   + E  R R+   +G+VI+R+  GIS  + +R++  G+GVE  FP+++P + +I+V+   KVRRAKLYYLR
Sbjct:   16 DIPNFRPGDTVRVHAKVVEGTRERIQIFEGVVISRKGQGISEMYTVRKISGGIGVERTFPIHTPRVDKIEVIRHGKVRRAKLYYLR 101          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_STRPF (50S ribosomal protein L19 OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=rplS PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13
Identity = 36/86 (41.86%), Postives = 59/86 (68.60%), Query Frame = 1
Query:  433 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            +IP+ +PG  V++   + E  R R+   +G+VI+R+  GIS  + +R++  G+GVE  FP+++P + +I+V+   KVRRAKLYYLR
Sbjct:   16 DIPNFRPGDTVRVHAKVVEGTRERIQIFEGVVISRKGQGISEMYTVRKISGGIGVERTFPIHTPRVDKIEVIRHGKVRRAKLYYLR 101          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_STRPC (50S ribosomal protein L19 OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=rplS PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13
Identity = 36/86 (41.86%), Postives = 59/86 (68.60%), Query Frame = 1
Query:  433 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            +IP+ +PG  V++   + E  R R+   +G+VI+R+  GIS  + +R++  G+GVE  FP+++P + +I+V+   KVRRAKLYYLR
Sbjct:   16 DIPNFRPGDTVRVHAKVVEGTRERIQIFEGVVISRKGQGISEMYTVRKISGGIGVERTFPIHTPRVDKIEVIRHGKVRRAKLYYLR 101          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_STRPB (50S ribosomal protein L19 OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=rplS PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13
Identity = 36/86 (41.86%), Postives = 59/86 (68.60%), Query Frame = 1
Query:  433 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            +IP+ +PG  V++   + E  R R+   +G+VI+R+  GIS  + +R++  G+GVE  FP+++P + +I+V+   KVRRAKLYYLR
Sbjct:   16 DIPNFRPGDTVRVHAKVVEGTRERIQIFEGVVISRKGQGISEMYTVRKISGGIGVERTFPIHTPRVDKIEVIRHGKVRRAKLYYLR 101          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_STRP8 (50S ribosomal protein L19 OS=Streptococcus pyogenes serotype M18 GN=rplS PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13
Identity = 36/86 (41.86%), Postives = 59/86 (68.60%), Query Frame = 1
Query:  433 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            +IP+ +PG  V++   + E  R R+   +G+VI+R+  GIS  + +R++  G+GVE  FP+++P + +I+V+   KVRRAKLYYLR
Sbjct:   16 DIPNFRPGDTVRVHAKVVEGTRERIQIFEGVVISRKGQGISEMYTVRKISGGIGVERTFPIHTPRVDKIEVIRHGKVRRAKLYYLR 101          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_STRP6 (50S ribosomal protein L19 OS=Streptococcus pyogenes serotype M6 GN=rplS PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13
Identity = 36/86 (41.86%), Postives = 59/86 (68.60%), Query Frame = 1
Query:  433 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            +IP+ +PG  V++   + E  R R+   +G+VI+R+  GIS  + +R++  G+GVE  FP+++P + +I+V+   KVRRAKLYYLR
Sbjct:   16 DIPNFRPGDTVRVHAKVVEGTRERIQIFEGVVISRKGQGISEMYTVRKISGGIGVERTFPIHTPRVDKIEVIRHGKVRRAKLYYLR 101          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_STRP3 (50S ribosomal protein L19 OS=Streptococcus pyogenes serotype M3 GN=rplS PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13
Identity = 36/86 (41.86%), Postives = 59/86 (68.60%), Query Frame = 1
Query:  433 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            +IP+ +PG  V++   + E  R R+   +G+VI+R+  GIS  + +R++  G+GVE  FP+++P + +I+V+   KVRRAKLYYLR
Sbjct:   16 DIPNFRPGDTVRVHAKVVEGTRERIQIFEGVVISRKGQGISEMYTVRKISGGIGVERTFPIHTPRVDKIEVIRHGKVRRAKLYYLR 101          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_STRP1 (50S ribosomal protein L19 OS=Streptococcus pyogenes serotype M1 GN=rplS PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13
Identity = 36/86 (41.86%), Postives = 59/86 (68.60%), Query Frame = 1
Query:  433 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            +IP+ +PG  V++   + E  R R+   +G+VI+R+  GIS  + +R++  G+GVE  FP+++P + +I+V+   KVRRAKLYYLR
Sbjct:   16 DIPNFRPGDTVRVHAKVVEGTRERIQIFEGVVISRKGQGISEMYTVRKISGGIGVERTFPIHTPRVDKIEVIRHGKVRRAKLYYLR 101          
The following BLAST results are available for this feature:
BLAST of CF831998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL19_AZOVD9.008e-1441.2450S ribosomal protein L19 OS=Azotobacter vinelandi... [more]
RL19_STRPM1.177e-1341.8650S ribosomal protein L19 OS=Streptococcus pyogene... [more]
RL19_STRPG1.177e-1341.8650S ribosomal protein L19 OS=Streptococcus pyogene... [more]
RL19_STRPF1.177e-1341.8650S ribosomal protein L19 OS=Streptococcus pyogene... [more]
RL19_STRPC1.177e-1341.8650S ribosomal protein L19 OS=Streptococcus pyogene... [more]
RL19_STRPB1.177e-1341.8650S ribosomal protein L19 OS=Streptococcus pyogene... [more]
RL19_STRP81.177e-1341.8650S ribosomal protein L19 OS=Streptococcus pyogene... [more]
RL19_STRP61.177e-1341.8650S ribosomal protein L19 OS=Streptococcus pyogene... [more]
RL19_STRP31.177e-1341.8650S ribosomal protein L19 OS=Streptococcus pyogene... [more]
RL19_STRP11.177e-1341.8650S ribosomal protein L19 OS=Streptococcus pyogene... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831998 ID=CF831998; Name=CF831998; organism=Citrus sinensis; type=EST; length=741bp
GGGAGCATCCGATTAATTCAAAGGCATGCCCTTACCAGCTCAAACACTTG
TTCAATCCCAAACGGAGTCGTTTCAACCAAATCTGTCGGTCATTCGTTCC
ATTCTTTCAACAATTTTCTATCCCGCTCGCTCCACTTGTTAGCTACTCGC
TCGCAGGTAAAATATGGCTATCAAACCGAGTCTTGGGGTTCTTCGAACTA
TTACATTAGAACTAGTGGGCCTGGTTTGTTTCCACCAGCAATGATGGAGC
CACATTTTGCCAACAGGTGTATTTCAACATCGGAAAGTTCAGTTGAATCA
GCTTCATATCCTCCTGCTGCTGCTTCCTCTGATTTGGCTCCCCGCATCAA
ATTTAAGAGGCTTGATAAAACTGCCAGGCATATAATGCAGATTCTAGATA
AGGAAGCAGTGGAGAATGTGAAGTCACAGAGGGAGATCCCCGATATAAAG
CCTGGTTATATCGTGCAACTAAAAGTGGTAATTCCAGAGAACAAGAGACG
TGTTTCAACTTTAAAGGGTATTGTTATAGCAAGGCGTAATGCTGGTATAA
GTACTACATTTAGATTGAGGAGGCTGGTAGCAGGGGTTGGAGTCGAATCT
CTTTTCCCTTTGTACTCACCTAATATACTAGAAATAAAGGTGCTGGACAA
GAAGAAAGTGAGGAGGGCCAAGCTTTACTATCTGAGGGATAAGCTGAATC
CACTTAGAAATAAATAAGAAGCTTTATTGGTGGGAGGATTC
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