CF831998

Overview
NameCF831998
Unique NameCF831998
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_SHEAM (50S ribosomal protein L19 OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=rplS PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13
Identity = 41/106 (38.68%), Postives = 70/106 (66.04%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            +I+++L+ E ++     +++PD  PG  V ++V + E +K R+   +G+VIA+RN G+ + F +R++  G GVE  F  +SP I  I+V  + +VRRAKLYYLR++
Sbjct:    3 NIIKMLNDEQMK-----KDVPDFGPGDTVVVQVRVKEGDKERLQAFEGVVIAKRNRGLHSAFTVRKISNGEGVERAFQTHSPLISSIEVKRRGRVRRAKLYYLRER 103          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_POLNA (50S ribosomal protein L19 OS=Polaromonas naphthalenivorans (strain CJ2) GN=rplS PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13
Identity = 42/106 (39.62%), Postives = 69/106 (65.09%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            +++Q L++E +  +   + IP   PG  V + V V+   ++R+   +G+VIA+RN G++++F +R++  G GVE  F +YSP I +I+V  K  VRRAKLYYLR +
Sbjct:    2 NLIQTLEQEEIARLN--KTIPVYAPGDTVIVSVNVVEGTRKRLQAFEGVVIAKRNRGLNSSFIVRKISNGEGVERTFQVYSPLIAKIEVKRKGDVRRAKLYYLRSR 105          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_ORITI (50S ribosomal protein L19 OS=Orientia tsutsugamushi (strain Ikeda) GN=rplS PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13
Identity = 39/105 (37.14%), Postives = 68/105 (64.76%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPEN-KRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690
            ++++  ++E ++ +   + IP+ +PG  V++ + I E    R+   +G+VIAR N  IS++F +R++  G G+E  F LYSP I  I+++ +  VRRAKLYYLR+
Sbjct:    2 NLIKQFEQEQIKKLTQGKSIPNFRPGDTVKVNLRIIEGANERIQAYQGVVIARANRSISSSFTVRKISHGQGIERKFMLYSPLISSIELIKQGVVRRAKLYYLRN 106          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_NITSB (50S ribosomal protein L19 OS=Nitratiruptor sp. (strain SB155-2) GN=rplS PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13
Identity = 40/91 (43.96%), Postives = 62/91 (68.13%), Query Frame = 1
Query:  427 QREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAG-VGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            Q+ +P+ K G  V++ V I E +K R+   +G+ IA R  G   TF +R++ A  +GVE +FPLYS +I +IKV+ + +VRR+KLYYLR++
Sbjct:   16 QKSVPEFKAGDTVRVAVEIKEGDKTRIQNFEGVCIAIRGEGTGKTFTVRKIGANNIGVERIFPLYSDSIKDIKVVRRGRVRRSKLYYLRER 106          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_FUSNN (50S ribosomal protein L19 OS=Fusobacterium nucleatum subsp. nucleatum GN=rplS PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13
Identity = 41/96 (42.71%), Postives = 59/96 (61.46%), Query Frame = 1
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            E VE    + +IP  K G  + +   + E NK RV   +G+VI     G++ TF +R++ AG+GVE + P+ SPNI  I+VL   +VRR+KLYYLR
Sbjct:    7 ELVEKEYLRSDIPQFKAGDTIGVYYKVKEGNKERVQLFEGVVIRVNGGGVAKTFTVRKVTAGIGVERIIPVNSPNIDRIEVLKVGRVRRSKLYYLR 102          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_CHLTE (50S ribosomal protein L19 OS=Chlorobium tepidum GN=rplS PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13
Identity = 38/98 (38.78%), Postives = 62/98 (63.27%), Query Frame = 1
Query:  403 EAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            + VE  + + +IP+++PG  V++++ VI   K R+   +G+VI  +  G S T  +R++  GVGVE + P+ SPNI  + V+   K RRAKL+YLR +
Sbjct:    6 QLVEATQQRNDIPEVRPGDTVRIQLKVIEGEKERLQAFEGVVIGDKGMGASKTITVRKISHGVGVERIIPVNSPNIESVTVVRSGKARRAKLFYLRKR 103          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_CHLPD (50S ribosomal protein L19 OS=Chlorobium phaeobacteroides (strain DSM 266) GN=rplS PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13
Identity = 42/98 (42.86%), Postives = 62/98 (63.27%), Query Frame = 1
Query:  403 EAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            + VE  +++ + P I PG  V++++ VI   K R+   +G+VI+ R AG S T  +R++  GVGVE + P+ SPNI  I VL   K RRAKL+YLR +
Sbjct:    6 QLVEASEARNDFPAINPGDTVKIQLKVIEGEKERLQAFEGVVISDRGAGGSKTITVRKISHGVGVERIIPVNSPNIESITVLKHGKARRAKLFYLRKR 103          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_CAMFF (50S ribosomal protein L19 OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=rplS PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13
Identity = 42/100 (42.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:  403 EAVENVKSQ-REIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAG-VGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            EA EN + + + +PD + G  +++ + I E +K RV   +GI IARR +G   TF +R++ A  VGVE +FP+YS ++  I VL + ++RR+KL+YLRD+
Sbjct:    7 EAFENAQIENKSVPDFRAGDTLRIAIRIKEGDKTRVQNFEGICIARRGSGSGETFIIRKIGANSVGVERIFPIYSESLESITVLRRGRIRRSKLFYLRDR 106          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_AKKM8 (50S ribosomal protein L19 OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=rplS PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13
Identity = 41/105 (39.05%), Postives = 69/105 (65.71%), Query Frame = 1
Query:  385 MQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 696
            M I++K   E +K+  ++     G  +++   VI   K R+   +GIVIA+R +GI+  F +R++  G GVE +FPL++P I +I+V+++ KVRRAKL+YLR ++
Sbjct:    1 MNIINKIEQEQLKA--DVTPFNVGDTIKVHTRVIEGGKERIQIFQGIVIAKRGSGINEAFTVRKISYGEGVERVFPLHTPRIAKIEVVNRGKVRRAKLHYLRGRI 103          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RK19_RHDSA (50S ribosomal protein L19, chloroplastic OS=Rhodomonas salina GN=rpl19 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13
Identity = 36/88 (40.91%), Postives = 62/88 (70.45%), Query Frame = 1
Query:  436 IPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 696
            +PD+  G  V++ V+I E NK RV   +G+VI++ N G++TT  +RR++ G+GVE ++ + SP +   ++L + K+RR+KLYYLR ++
Sbjct:   24 MPDVGVGDTVKIGVLITEGNKERVQFSEGVVISKNNNGLNTTVTVRRVLQGIGVERIYLVNSPKLKSFEILRRSKIRRSKLYYLRSRV 111          
The following BLAST results are available for this feature:
BLAST of CF831998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL19_SHEAM1.177e-1338.6850S ribosomal protein L19 OS=Shewanella amazonensi... [more]
RL19_POLNA1.177e-1339.6250S ribosomal protein L19 OS=Polaromonas naphthale... [more]
RL19_ORITI1.177e-1337.1450S ribosomal protein L19 OS=Orientia tsutsugamush... [more]
RL19_NITSB1.177e-1343.9650S ribosomal protein L19 OS=Nitratiruptor sp. (st... [more]
RL19_FUSNN1.177e-1342.7150S ribosomal protein L19 OS=Fusobacterium nucleat... [more]
RL19_CHLTE1.177e-1338.7850S ribosomal protein L19 OS=Chlorobium tepidum GN... [more]
RL19_CHLPD1.177e-1342.8650S ribosomal protein L19 OS=Chlorobium phaeobacte... [more]
RL19_CAMFF1.177e-1342.0050S ribosomal protein L19 OS=Campylobacter fetus s... [more]
RL19_AKKM81.177e-1339.0550S ribosomal protein L19 OS=Akkermansia muciniphi... [more]
RK19_RHDSA1.177e-1340.9150S ribosomal protein L19, chloroplastic OS=Rhodom... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831998 ID=CF831998; Name=CF831998; organism=Citrus sinensis; type=EST; length=741bp
GGGAGCATCCGATTAATTCAAAGGCATGCCCTTACCAGCTCAAACACTTG
TTCAATCCCAAACGGAGTCGTTTCAACCAAATCTGTCGGTCATTCGTTCC
ATTCTTTCAACAATTTTCTATCCCGCTCGCTCCACTTGTTAGCTACTCGC
TCGCAGGTAAAATATGGCTATCAAACCGAGTCTTGGGGTTCTTCGAACTA
TTACATTAGAACTAGTGGGCCTGGTTTGTTTCCACCAGCAATGATGGAGC
CACATTTTGCCAACAGGTGTATTTCAACATCGGAAAGTTCAGTTGAATCA
GCTTCATATCCTCCTGCTGCTGCTTCCTCTGATTTGGCTCCCCGCATCAA
ATTTAAGAGGCTTGATAAAACTGCCAGGCATATAATGCAGATTCTAGATA
AGGAAGCAGTGGAGAATGTGAAGTCACAGAGGGAGATCCCCGATATAAAG
CCTGGTTATATCGTGCAACTAAAAGTGGTAATTCCAGAGAACAAGAGACG
TGTTTCAACTTTAAAGGGTATTGTTATAGCAAGGCGTAATGCTGGTATAA
GTACTACATTTAGATTGAGGAGGCTGGTAGCAGGGGTTGGAGTCGAATCT
CTTTTCCCTTTGTACTCACCTAATATACTAGAAATAAAGGTGCTGGACAA
GAAGAAAGTGAGGAGGGCCAAGCTTTACTATCTGAGGGATAAGCTGAATC
CACTTAGAAATAAATAAGAAGCTTTATTGGTGGGAGGATTC
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