CF831998
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_SHEAM (50S ribosomal protein L19 OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=rplS PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13 Identity = 41/106 (38.68%), Postives = 70/106 (66.04%), Query Frame = 1 Query: 379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693 +I+++L+ E ++ +++PD PG V ++V + E +K R+ +G+VIA+RN G+ + F +R++ G GVE F +SP I I+V + +VRRAKLYYLR++ Sbjct: 3 NIIKMLNDEQMK-----KDVPDFGPGDTVVVQVRVKEGDKERLQAFEGVVIAKRNRGLHSAFTVRKISNGEGVERAFQTHSPLISSIEVKRRGRVRRAKLYYLRER 103
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_POLNA (50S ribosomal protein L19 OS=Polaromonas naphthalenivorans (strain CJ2) GN=rplS PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13 Identity = 42/106 (39.62%), Postives = 69/106 (65.09%), Query Frame = 1 Query: 379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693 +++Q L++E + + + IP PG V + V V+ ++R+ +G+VIA+RN G++++F +R++ G GVE F +YSP I +I+V K VRRAKLYYLR + Sbjct: 2 NLIQTLEQEEIARLN--KTIPVYAPGDTVIVSVNVVEGTRKRLQAFEGVVIAKRNRGLNSSFIVRKISNGEGVERTFQVYSPLIAKIEVKRKGDVRRAKLYYLRSR 105
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_ORITI (50S ribosomal protein L19 OS=Orientia tsutsugamushi (strain Ikeda) GN=rplS PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13 Identity = 39/105 (37.14%), Postives = 68/105 (64.76%), Query Frame = 1 Query: 379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPEN-KRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690 ++++ ++E ++ + + IP+ +PG V++ + I E R+ +G+VIAR N IS++F +R++ G G+E F LYSP I I+++ + VRRAKLYYLR+ Sbjct: 2 NLIKQFEQEQIKKLTQGKSIPNFRPGDTVKVNLRIIEGANERIQAYQGVVIARANRSISSSFTVRKISHGQGIERKFMLYSPLISSIELIKQGVVRRAKLYYLRN 106
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_NITSB (50S ribosomal protein L19 OS=Nitratiruptor sp. (strain SB155-2) GN=rplS PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13 Identity = 40/91 (43.96%), Postives = 62/91 (68.13%), Query Frame = 1 Query: 427 QREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAG-VGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693 Q+ +P+ K G V++ V I E +K R+ +G+ IA R G TF +R++ A +GVE +FPLYS +I +IKV+ + +VRR+KLYYLR++ Sbjct: 16 QKSVPEFKAGDTVRVAVEIKEGDKTRIQNFEGVCIAIRGEGTGKTFTVRKIGANNIGVERIFPLYSDSIKDIKVVRRGRVRRSKLYYLRER 106
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_FUSNN (50S ribosomal protein L19 OS=Fusobacterium nucleatum subsp. nucleatum GN=rplS PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13 Identity = 41/96 (42.71%), Postives = 59/96 (61.46%), Query Frame = 1 Query: 403 EAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687 E VE + +IP K G + + + E NK RV +G+VI G++ TF +R++ AG+GVE + P+ SPNI I+VL +VRR+KLYYLR Sbjct: 7 ELVEKEYLRSDIPQFKAGDTIGVYYKVKEGNKERVQLFEGVVIRVNGGGVAKTFTVRKVTAGIGVERIIPVNSPNIDRIEVLKVGRVRRSKLYYLR 102
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_CHLTE (50S ribosomal protein L19 OS=Chlorobium tepidum GN=rplS PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13 Identity = 38/98 (38.78%), Postives = 62/98 (63.27%), Query Frame = 1 Query: 403 EAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693 + VE + + +IP+++PG V++++ VI K R+ +G+VI + G S T +R++ GVGVE + P+ SPNI + V+ K RRAKL+YLR + Sbjct: 6 QLVEATQQRNDIPEVRPGDTVRIQLKVIEGEKERLQAFEGVVIGDKGMGASKTITVRKISHGVGVERIIPVNSPNIESVTVVRSGKARRAKLFYLRKR 103
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_CHLPD (50S ribosomal protein L19 OS=Chlorobium phaeobacteroides (strain DSM 266) GN=rplS PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13 Identity = 42/98 (42.86%), Postives = 62/98 (63.27%), Query Frame = 1 Query: 403 EAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693 + VE +++ + P I PG V++++ VI K R+ +G+VI+ R AG S T +R++ GVGVE + P+ SPNI I VL K RRAKL+YLR + Sbjct: 6 QLVEASEARNDFPAINPGDTVKIQLKVIEGEKERLQAFEGVVISDRGAGGSKTITVRKISHGVGVERIIPVNSPNIESITVLKHGKARRAKLFYLRKR 103
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_CAMFF (50S ribosomal protein L19 OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=rplS PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13 Identity = 42/100 (42.00%), Postives = 67/100 (67.00%), Query Frame = 1 Query: 403 EAVENVKSQ-REIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAG-VGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693 EA EN + + + +PD + G +++ + I E +K RV +GI IARR +G TF +R++ A VGVE +FP+YS ++ I VL + ++RR+KL+YLRD+ Sbjct: 7 EAFENAQIENKSVPDFRAGDTLRIAIRIKEGDKTRVQNFEGICIARRGSGSGETFIIRKIGANSVGVERIFPIYSESLESITVLRRGRIRRSKLFYLRDR 106
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_AKKM8 (50S ribosomal protein L19 OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=rplS PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13 Identity = 41/105 (39.05%), Postives = 69/105 (65.71%), Query Frame = 1 Query: 385 MQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 696 M I++K E +K+ ++ G +++ VI K R+ +GIVIA+R +GI+ F +R++ G GVE +FPL++P I +I+V+++ KVRRAKL+YLR ++ Sbjct: 1 MNIINKIEQEQLKA--DVTPFNVGDTIKVHTRVIEGGKERIQIFQGIVIAKRGSGINEAFTVRKISYGEGVERVFPLHTPRIAKIEVVNRGKVRRAKLHYLRGRI 103
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RK19_RHDSA (50S ribosomal protein L19, chloroplastic OS=Rhodomonas salina GN=rpl19 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13 Identity = 36/88 (40.91%), Postives = 62/88 (70.45%), Query Frame = 1 Query: 436 IPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 696 +PD+ G V++ V+I E NK RV +G+VI++ N G++TT +RR++ G+GVE ++ + SP + ++L + K+RR+KLYYLR ++ Sbjct: 24 MPDVGVGDTVKIGVLITEGNKERVQFSEGVVISKNNNGLNTTVTVRRVLQGIGVERIYLVNSPKLKSFEILRRSKIRRSKLYYLRSRV 111 The following BLAST results are available for this feature:
BLAST of CF831998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF831998 ID=CF831998; Name=CF831998; organism=Citrus sinensis; type=EST; length=741bpback to top |