CF831998
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RK19_PHATR (50S ribosomal protein L19, chloroplastic OS=Phaeodactylum tricornutum GN=rpl19 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13 Identity = 40/97 (41.24%), Postives = 66/97 (68.04%), Query Frame = 1 Query: 403 EAVENVKSQREIPDIKPGYIVQLKVVIPEN-KRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690 +A+E+ ++++P +K G V++ V I E K RV +G +IA++N+ I+ T +R+++ G+G+E +F ++SP I I VL KVRRAKLYYLR+ Sbjct: 11 DAIESKFIKKDLPTLKIGDNVRIGVKIIEGTKERVQFYEGTIIAKKNSSINMTITVRKILQGIGIERVFLVHSPKIDSITVLRSSKVRRAKLYYLRN 107
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_SYNP6 (50S ribosomal protein L19 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplS PE=3 SV=2) HSP 1 Score: 76.6406 bits (187), Expect = 1.537e-13 Identity = 41/98 (41.84%), Postives = 64/98 (65.31%), Query Frame = 1 Query: 406 AVENVKSQREIPDIKPGYIVQLKVVIPEN-KRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 696 ++E ++ ++P I G V++ V I E K RV +G+VIA GI+ + +RR+ GVGVE +F L+SP + ++VL + +VRRAKLYYLRD++ Sbjct: 9 SIEAEYTKSDLPTIYVGDTVKVGVRIQEGGKERVQPYEGVVIANSGGGINESITVRRIFQGVGVERVFLLHSPAVASVQVLRRGRVRRAKLYYLRDRV 106
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_SYNE7 (50S ribosomal protein L19 OS=Synechococcus elongatus (strain PCC 7942) GN=rplS PE=3 SV=2) HSP 1 Score: 76.6406 bits (187), Expect = 1.537e-13 Identity = 41/98 (41.84%), Postives = 64/98 (65.31%), Query Frame = 1 Query: 406 AVENVKSQREIPDIKPGYIVQLKVVIPEN-KRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 696 ++E ++ ++P I G V++ V I E K RV +G+VIA GI+ + +RR+ GVGVE +F L+SP + ++VL + +VRRAKLYYLRD++ Sbjct: 9 SIEAEYTKSDLPTIYVGDTVKVGVRIQEGGKERVQPYEGVVIANSGGGINESITVRRIFQGVGVERVFLLHSPAVASVQVLRRGRVRRAKLYYLRDRV 106
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_STRPZ (50S ribosomal protein L19 OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=rplS PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.537e-13 Identity = 35/86 (40.70%), Postives = 59/86 (68.60%), Query Frame = 1 Query: 433 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687 ++P+ +PG V++ + E R R+ +G+VI+R+ GIS + +R++ G+GVE FP+++P + +I+V+ KVRRAKLYYLR Sbjct: 16 DVPNFRPGDTVRVHAKVVEGTRERIQIFEGVVISRKGQGISEMYTVRKISGGIGVERTFPIHTPRVDKIEVIRHGKVRRAKLYYLR 101
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_STRPD (50S ribosomal protein L19 OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=rplS PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.537e-13 Identity = 36/86 (41.86%), Postives = 59/86 (68.60%), Query Frame = 1 Query: 433 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687 +IP+ +PG V++ + E R R+ +G+VI+R+ GIS + +R++ G+GVE FP+++P + +I+V+ KVRRAKLYYLR Sbjct: 16 DIPNFRPGDTVRVHAKVVEGTRERIQIFEGVVISRKGQGISEMYTVRKISGGIGVERTFPIHTPRVDKIEVVRHGKVRRAKLYYLR 101
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_RENSM (50S ribosomal protein L19 OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=rplS PE=3 SV=2) HSP 1 Score: 76.6406 bits (187), Expect = 1.537e-13 Identity = 41/103 (39.81%), Postives = 67/103 (65.05%), Query Frame = 1 Query: 385 MQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690 M ILD +++S ++P+ + G +++ V +I N+ RV +G V+ R+ G+ TF +R++ GVGVE FP++SP I +I+V+ + VRRAKLYY+RD Sbjct: 1 MHILDSLDAASLRS--DVPEFRAGDNLKVHVNIIEGNRSRVQVFQGFVLGRQGDGVRETFTVRKVSFGVGVERTFPVHSPIIEKIEVVTRGDVRRAKLYYMRD 101
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_PSYCK (50S ribosomal protein L19 OS=Psychrobacter cryohalolentis (strain K5) GN=rplS PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.537e-13 Identity = 40/88 (45.45%), Postives = 60/88 (68.18%), Query Frame = 1 Query: 433 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693 E P PG V ++V + E +R R+ +G+VIA+RN G+++ F +R++ +GVGVE F L+SP I I+V + VRRAKLYYLR++ Sbjct: 18 ERPSFAPGDTVVVQVKVREGERERLQAFEGVVIAKRNRGLNSAFTVRKISSGVGVERAFQLHSPIIDSIEVKRRGAVRRAKLYYLRER 105
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_PSYA2 (50S ribosomal protein L19 OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=rplS PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.537e-13 Identity = 40/88 (45.45%), Postives = 60/88 (68.18%), Query Frame = 1 Query: 433 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693 E P PG V ++V + E +R R+ +G+VIA+RN G+++ F +R++ +GVGVE F L+SP I I+V + VRRAKLYYLR++ Sbjct: 18 ERPSFAPGDTVVVQVKVREGERERLQAFEGVVIAKRNRGLNSAFTVRKISSGVGVERAFQLHSPIIDSIEVKRRGAVRRAKLYYLRER 105
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_MANSM (50S ribosomal protein L19 OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rplS PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.537e-13 Identity = 40/96 (41.67%), Postives = 62/96 (64.58%), Query Frame = 1 Query: 409 VENVKSQREIPDIKPGYIVQLKVVIPEN-KRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693 +E + ++ IP +PG +++KV + E K+R+ +G+VIA RN G+ + F LR++ G GVE +F +SP I I V K VR+AKLYYLR++ Sbjct: 8 LEQEQLKQNIPSFRPGDTLEVKVWVVEGAKKRLQAFEGVVIAIRNRGLHSAFTLRKVSNGTGVERVFQTHSPAIDSISVKRKGAVRKAKLYYLRER 103
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_LACS1 (50S ribosomal protein L19 OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=rplS PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.537e-13 Identity = 39/88 (44.32%), Postives = 58/88 (65.91%), Query Frame = 1 Query: 427 QREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687 + +IPD + G V++ I E R R+ +G+VI RR GIS T+ +R++ G+GVE FPL++P + +I+V +VRRAKLYYLR Sbjct: 16 RNDIPDFRAGDSVRVHARIVEGSRERIQIFEGVVIKRRGEGISETYTVRKISNGIGVERTFPLHTPRVDKIEVTRHGRVRRAKLYYLR 103 The following BLAST results are available for this feature:
BLAST of CF831998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF831998 ID=CF831998; Name=CF831998; organism=Citrus sinensis; type=EST; length=741bpback to top |