CF831998

Overview
NameCF831998
Unique NameCF831998
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RK19_PHATR (50S ribosomal protein L19, chloroplastic OS=Phaeodactylum tricornutum GN=rpl19 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13
Identity = 40/97 (41.24%), Postives = 66/97 (68.04%), Query Frame = 1
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPEN-KRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690
            +A+E+   ++++P +K G  V++ V I E  K RV   +G +IA++N+ I+ T  +R+++ G+G+E +F ++SP I  I VL   KVRRAKLYYLR+
Sbjct:   11 DAIESKFIKKDLPTLKIGDNVRIGVKIIEGTKERVQFYEGTIIAKKNSSINMTITVRKILQGIGIERVFLVHSPKIDSITVLRSSKVRRAKLYYLRN 107          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_SYNP6 (50S ribosomal protein L19 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplS PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.537e-13
Identity = 41/98 (41.84%), Postives = 64/98 (65.31%), Query Frame = 1
Query:  406 AVENVKSQREIPDIKPGYIVQLKVVIPEN-KRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 696
            ++E   ++ ++P I  G  V++ V I E  K RV   +G+VIA    GI+ +  +RR+  GVGVE +F L+SP +  ++VL + +VRRAKLYYLRD++
Sbjct:    9 SIEAEYTKSDLPTIYVGDTVKVGVRIQEGGKERVQPYEGVVIANSGGGINESITVRRIFQGVGVERVFLLHSPAVASVQVLRRGRVRRAKLYYLRDRV 106          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_SYNE7 (50S ribosomal protein L19 OS=Synechococcus elongatus (strain PCC 7942) GN=rplS PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.537e-13
Identity = 41/98 (41.84%), Postives = 64/98 (65.31%), Query Frame = 1
Query:  406 AVENVKSQREIPDIKPGYIVQLKVVIPEN-KRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 696
            ++E   ++ ++P I  G  V++ V I E  K RV   +G+VIA    GI+ +  +RR+  GVGVE +F L+SP +  ++VL + +VRRAKLYYLRD++
Sbjct:    9 SIEAEYTKSDLPTIYVGDTVKVGVRIQEGGKERVQPYEGVVIANSGGGINESITVRRIFQGVGVERVFLLHSPAVASVQVLRRGRVRRAKLYYLRDRV 106          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_STRPZ (50S ribosomal protein L19 OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=rplS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.537e-13
Identity = 35/86 (40.70%), Postives = 59/86 (68.60%), Query Frame = 1
Query:  433 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            ++P+ +PG  V++   + E  R R+   +G+VI+R+  GIS  + +R++  G+GVE  FP+++P + +I+V+   KVRRAKLYYLR
Sbjct:   16 DVPNFRPGDTVRVHAKVVEGTRERIQIFEGVVISRKGQGISEMYTVRKISGGIGVERTFPIHTPRVDKIEVIRHGKVRRAKLYYLR 101          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_STRPD (50S ribosomal protein L19 OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=rplS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.537e-13
Identity = 36/86 (41.86%), Postives = 59/86 (68.60%), Query Frame = 1
Query:  433 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            +IP+ +PG  V++   + E  R R+   +G+VI+R+  GIS  + +R++  G+GVE  FP+++P + +I+V+   KVRRAKLYYLR
Sbjct:   16 DIPNFRPGDTVRVHAKVVEGTRERIQIFEGVVISRKGQGISEMYTVRKISGGIGVERTFPIHTPRVDKIEVVRHGKVRRAKLYYLR 101          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_RENSM (50S ribosomal protein L19 OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=rplS PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.537e-13
Identity = 41/103 (39.81%), Postives = 67/103 (65.05%), Query Frame = 1
Query:  385 MQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690
            M ILD     +++S  ++P+ + G  +++ V +I  N+ RV   +G V+ R+  G+  TF +R++  GVGVE  FP++SP I +I+V+ +  VRRAKLYY+RD
Sbjct:    1 MHILDSLDAASLRS--DVPEFRAGDNLKVHVNIIEGNRSRVQVFQGFVLGRQGDGVRETFTVRKVSFGVGVERTFPVHSPIIEKIEVVTRGDVRRAKLYYMRD 101          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_PSYCK (50S ribosomal protein L19 OS=Psychrobacter cryohalolentis (strain K5) GN=rplS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.537e-13
Identity = 40/88 (45.45%), Postives = 60/88 (68.18%), Query Frame = 1
Query:  433 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            E P   PG  V ++V + E +R R+   +G+VIA+RN G+++ F +R++ +GVGVE  F L+SP I  I+V  +  VRRAKLYYLR++
Sbjct:   18 ERPSFAPGDTVVVQVKVREGERERLQAFEGVVIAKRNRGLNSAFTVRKISSGVGVERAFQLHSPIIDSIEVKRRGAVRRAKLYYLRER 105          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_PSYA2 (50S ribosomal protein L19 OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=rplS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.537e-13
Identity = 40/88 (45.45%), Postives = 60/88 (68.18%), Query Frame = 1
Query:  433 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            E P   PG  V ++V + E +R R+   +G+VIA+RN G+++ F +R++ +GVGVE  F L+SP I  I+V  +  VRRAKLYYLR++
Sbjct:   18 ERPSFAPGDTVVVQVKVREGERERLQAFEGVVIAKRNRGLNSAFTVRKISSGVGVERAFQLHSPIIDSIEVKRRGAVRRAKLYYLRER 105          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_MANSM (50S ribosomal protein L19 OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rplS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.537e-13
Identity = 40/96 (41.67%), Postives = 62/96 (64.58%), Query Frame = 1
Query:  409 VENVKSQREIPDIKPGYIVQLKVVIPEN-KRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            +E  + ++ IP  +PG  +++KV + E  K+R+   +G+VIA RN G+ + F LR++  G GVE +F  +SP I  I V  K  VR+AKLYYLR++
Sbjct:    8 LEQEQLKQNIPSFRPGDTLEVKVWVVEGAKKRLQAFEGVVIAIRNRGLHSAFTLRKVSNGTGVERVFQTHSPAIDSISVKRKGAVRKAKLYYLRER 103          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_LACS1 (50S ribosomal protein L19 OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=rplS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.537e-13
Identity = 39/88 (44.32%), Postives = 58/88 (65.91%), Query Frame = 1
Query:  427 QREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            + +IPD + G  V++   I E  R R+   +G+VI RR  GIS T+ +R++  G+GVE  FPL++P + +I+V    +VRRAKLYYLR
Sbjct:   16 RNDIPDFRAGDSVRVHARIVEGSRERIQIFEGVVIKRRGEGISETYTVRKISNGIGVERTFPLHTPRVDKIEVTRHGRVRRAKLYYLR 103          
The following BLAST results are available for this feature:
BLAST of CF831998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK19_PHATR1.177e-1341.2450S ribosomal protein L19, chloroplastic OS=Phaeod... [more]
RL19_SYNP61.537e-1341.8450S ribosomal protein L19 OS=Synechococcus sp. (st... [more]
RL19_SYNE71.537e-1341.8450S ribosomal protein L19 OS=Synechococcus elongat... [more]
RL19_STRPZ1.537e-1340.7050S ribosomal protein L19 OS=Streptococcus pyogene... [more]
RL19_STRPD1.537e-1341.8650S ribosomal protein L19 OS=Streptococcus pyogene... [more]
RL19_RENSM1.537e-1339.8150S ribosomal protein L19 OS=Renibacterium salmoni... [more]
RL19_PSYCK1.537e-1345.4550S ribosomal protein L19 OS=Psychrobacter cryohal... [more]
RL19_PSYA21.537e-1345.4550S ribosomal protein L19 OS=Psychrobacter arcticu... [more]
RL19_MANSM1.537e-1341.6750S ribosomal protein L19 OS=Mannheimia succinicip... [more]
RL19_LACS11.537e-1344.3250S ribosomal protein L19 OS=Lactobacillus salivar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831998 ID=CF831998; Name=CF831998; organism=Citrus sinensis; type=EST; length=741bp
GGGAGCATCCGATTAATTCAAAGGCATGCCCTTACCAGCTCAAACACTTG
TTCAATCCCAAACGGAGTCGTTTCAACCAAATCTGTCGGTCATTCGTTCC
ATTCTTTCAACAATTTTCTATCCCGCTCGCTCCACTTGTTAGCTACTCGC
TCGCAGGTAAAATATGGCTATCAAACCGAGTCTTGGGGTTCTTCGAACTA
TTACATTAGAACTAGTGGGCCTGGTTTGTTTCCACCAGCAATGATGGAGC
CACATTTTGCCAACAGGTGTATTTCAACATCGGAAAGTTCAGTTGAATCA
GCTTCATATCCTCCTGCTGCTGCTTCCTCTGATTTGGCTCCCCGCATCAA
ATTTAAGAGGCTTGATAAAACTGCCAGGCATATAATGCAGATTCTAGATA
AGGAAGCAGTGGAGAATGTGAAGTCACAGAGGGAGATCCCCGATATAAAG
CCTGGTTATATCGTGCAACTAAAAGTGGTAATTCCAGAGAACAAGAGACG
TGTTTCAACTTTAAAGGGTATTGTTATAGCAAGGCGTAATGCTGGTATAA
GTACTACATTTAGATTGAGGAGGCTGGTAGCAGGGGTTGGAGTCGAATCT
CTTTTCCCTTTGTACTCACCTAATATACTAGAAATAAAGGTGCTGGACAA
GAAGAAAGTGAGGAGGGCCAAGCTTTACTATCTGAGGGATAAGCTGAATC
CACTTAGAAATAAATAAGAAGCTTTATTGGTGGGAGGATTC
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