CF831998

Overview
NameCF831998
Unique NameCF831998
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_HAEDU (50S ribosomal protein L19 OS=Haemophilus ducreyi GN=rplS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.537e-13
Identity = 40/96 (41.67%), Postives = 63/96 (65.62%), Query Frame = 1
Query:  409 VENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            +E  + ++ +P  +PG  +++KV V+  +KRR+   +G+VIA RN G+ + F LR++  GVGVE +   +SP I  I V  K  VR+AKLYYLR++
Sbjct:    8 IEQEQLKQNVPSFRPGDTLEVKVWVVEGSKRRLQAFEGVVIAIRNRGLHSAFTLRKVSNGVGVERVLQTHSPIIDSIFVKRKGAVRKAKLYYLRER 103          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_CAMJR (50S ribosomal protein L19 OS=Campylobacter jejuni (strain RM1221) GN=rplS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.537e-13
Identity = 40/90 (44.44%), Postives = 62/90 (68.89%), Query Frame = 1
Query:  430 REIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAG-VGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            + +PD + G  ++L + I E +K R+   +GI IARR  G+S TF +R++ A  VGVE +FP+YS ++  I VL + +VRRA+L+YLRD+
Sbjct:   17 KNVPDFRAGDTLKLAIRIKEGDKTRIQNFEGICIARRGNGVSETFIVRKIGANNVGVERIFPIYSESLESITVLRRGRVRRARLFYLRDR 106          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_CAMJJ (50S ribosomal protein L19 OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=rplS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.537e-13
Identity = 40/90 (44.44%), Postives = 62/90 (68.89%), Query Frame = 1
Query:  430 REIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAG-VGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            + +PD + G  ++L + I E +K R+   +GI IARR  G+S TF +R++ A  VGVE +FP+YS ++  I VL + +VRRA+L+YLRD+
Sbjct:   17 KNVPDFRAGDTLKLAIRIKEGDKTRIQNFEGICIARRGNGVSETFIVRKMGANNVGVERIFPIYSESLESITVLRRGRVRRARLFYLRDR 106          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_CAMJE (50S ribosomal protein L19 OS=Campylobacter jejuni GN=rplS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.537e-13
Identity = 40/90 (44.44%), Postives = 62/90 (68.89%), Query Frame = 1
Query:  430 REIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAG-VGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            + +PD + G  ++L + I E +K R+   +GI IARR  G+S TF +R++ A  VGVE +FP+YS ++  I VL + +VRRA+L+YLRD+
Sbjct:   17 KNVPDFRAGDTLKLAIRIKEGDKTRIQNFEGICIARRGNGVSETFIVRKIGANNVGVERIFPIYSESLESITVLRRGRVRRARLFYLRDR 106          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_CAMJD (50S ribosomal protein L19 OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=rplS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.537e-13
Identity = 40/90 (44.44%), Postives = 62/90 (68.89%), Query Frame = 1
Query:  430 REIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAG-VGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            + +PD + G  ++L + I E +K R+   +GI IARR  G+S TF +R++ A  VGVE +FP+YS ++  I VL + +VRRA+L+YLRD+
Sbjct:   17 KNVPDFRAGDTLKLAIRIKEGDKTRIQNFEGICIARRGNGVSETFIVRKMGANNVGVERIFPIYSESLESIAVLRRGRVRRARLFYLRDR 106          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_CAMJ8 (50S ribosomal protein L19 OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=rplS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.537e-13
Identity = 40/90 (44.44%), Postives = 62/90 (68.89%), Query Frame = 1
Query:  430 REIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAG-VGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            + +PD + G  ++L + I E +K R+   +GI IARR  G+S TF +R++ A  VGVE +FP+YS ++  I VL + +VRRA+L+YLRD+
Sbjct:   17 KNVPDFRAGDTLKLAIRIKEGDKTRIQNFEGICIARRGNGVSETFIVRKMGANNVGVERIFPIYSESLESITVLRRGRVRRARLFYLRDR 106          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_BLOFL (50S ribosomal protein L19 OS=Blochmannia floridanus GN=rplS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.537e-13
Identity = 37/94 (39.36%), Postives = 65/94 (69.15%), Query Frame = 1
Query:  412 ENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690
            E+ + +++IP + PG +V++ + +I  NK+R    +G++IA +N G+++ F +R++ +G GVE +F ++SP I EI +     VRRAKLYYLR+
Sbjct:    9 ESNQMKKDIPPLHPGDVVEISLWIIEGNKKRFQIFEGMIIAIKNRGLNSAFTVRKISSGEGVERVFQIHSPVIKEINIKKIGVVRRAKLYYLRN 102          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_ACTSZ (50S ribosomal protein L19 OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=rplS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.537e-13
Identity = 40/96 (41.67%), Postives = 62/96 (64.58%), Query Frame = 1
Query:  409 VENVKSQREIPDIKPGYIVQLKVVIPEN-KRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            +E  + ++ +P  +PG  +++KV + E  KRR+   +G+VIA RN G+ + F LR++  G GVE +F  +SP I  I V  K  VR+AKLYYLR++
Sbjct:    8 LEEEQLKQNVPSFRPGDTLEVKVWVVEGAKRRLQAFEGVVIAIRNRGLHSAFTLRKVSNGTGVERVFQTHSPVIDSITVKRKGAVRKAKLYYLRER 103          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_THICR (50S ribosomal protein L19 OS=Thiomicrospira crunogena (strain XCL-2) GN=rplS PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 38/95 (40.00%), Postives = 63/95 (66.32%), Query Frame = 1
Query:  409 VENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690
            +E  +  +E+P+  PG  V ++V + E +  R+   +G+VIA++N G++++F +R++  GVGVE  F  YSP +  ++V  +  VRRAKLYYLRD
Sbjct:    8 IEAEQMTKELPEFGPGDTVVVQVKVKEGSNERLQAYEGVVIAKKNRGLNSSFIVRKISHGVGVERTFQTYSPLVDSVEVKRRGDVRRAKLYYLRD 102          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_STRTR (50S ribosomal protein L19 OS=Streptococcus thermophilus GN=rplS PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 36/86 (41.86%), Postives = 59/86 (68.60%), Query Frame = 1
Query:  433 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            +IP  +PG  V++   + E  R R+   +G+VI+R+  GIS  + +R++ +G+GVE  FP+++P + +I+V+   KVRRAKLYYLR
Sbjct:   16 DIPSFRPGDTVRVHAKVVEGTRERIQIFEGVVISRKGQGISEMYTVRKISSGIGVERTFPIHTPRVDKIEVVRYGKVRRAKLYYLR 101          
The following BLAST results are available for this feature:
BLAST of CF831998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL19_HAEDU1.537e-1341.6750S ribosomal protein L19 OS=Haemophilus ducreyi G... [more]
RL19_CAMJR1.537e-1344.4450S ribosomal protein L19 OS=Campylobacter jejuni ... [more]
RL19_CAMJJ1.537e-1344.4450S ribosomal protein L19 OS=Campylobacter jejuni ... [more]
RL19_CAMJE1.537e-1344.4450S ribosomal protein L19 OS=Campylobacter jejuni ... [more]
RL19_CAMJD1.537e-1344.4450S ribosomal protein L19 OS=Campylobacter jejuni ... [more]
RL19_CAMJ81.537e-1344.4450S ribosomal protein L19 OS=Campylobacter jejuni ... [more]
RL19_BLOFL1.537e-1339.3650S ribosomal protein L19 OS=Blochmannia floridanu... [more]
RL19_ACTSZ1.537e-1341.6750S ribosomal protein L19 OS=Actinobacillus succin... [more]
RL19_THICR2.007e-1340.0050S ribosomal protein L19 OS=Thiomicrospira crunog... [more]
RL19_STRTR2.007e-1341.8650S ribosomal protein L19 OS=Streptococcus thermop... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01C09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831998 ID=CF831998; Name=CF831998; organism=Citrus sinensis; type=EST; length=741bp
GGGAGCATCCGATTAATTCAAAGGCATGCCCTTACCAGCTCAAACACTTG
TTCAATCCCAAACGGAGTCGTTTCAACCAAATCTGTCGGTCATTCGTTCC
ATTCTTTCAACAATTTTCTATCCCGCTCGCTCCACTTGTTAGCTACTCGC
TCGCAGGTAAAATATGGCTATCAAACCGAGTCTTGGGGTTCTTCGAACTA
TTACATTAGAACTAGTGGGCCTGGTTTGTTTCCACCAGCAATGATGGAGC
CACATTTTGCCAACAGGTGTATTTCAACATCGGAAAGTTCAGTTGAATCA
GCTTCATATCCTCCTGCTGCTGCTTCCTCTGATTTGGCTCCCCGCATCAA
ATTTAAGAGGCTTGATAAAACTGCCAGGCATATAATGCAGATTCTAGATA
AGGAAGCAGTGGAGAATGTGAAGTCACAGAGGGAGATCCCCGATATAAAG
CCTGGTTATATCGTGCAACTAAAAGTGGTAATTCCAGAGAACAAGAGACG
TGTTTCAACTTTAAAGGGTATTGTTATAGCAAGGCGTAATGCTGGTATAA
GTACTACATTTAGATTGAGGAGGCTGGTAGCAGGGGTTGGAGTCGAATCT
CTTTTCCCTTTGTACTCACCTAATATACTAGAAATAAAGGTGCTGGACAA
GAAGAAAGTGAGGAGGGCCAAGCTTTACTATCTGAGGGATAAGCTGAATC
CACTTAGAAATAAATAAGAAGCTTTATTGGTGGGAGGATTC
back to top