CF831998

Overview
NameCF831998
Unique NameCF831998
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_STRTD (50S ribosomal protein L19 OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=rplS PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 36/86 (41.86%), Postives = 59/86 (68.60%), Query Frame = 1
Query:  433 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            +IP  +PG  V++   + E  R R+   +G+VI+R+  GIS  + +R++ +G+GVE  FP+++P + +I+V+   KVRRAKLYYLR
Sbjct:   16 DIPSFRPGDTVRVHAKVVEGTRERIQIFEGVVISRKGQGISEMYTVRKISSGIGVERTFPIHTPRVDKIEVVRYGKVRRAKLYYLR 101          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_STRT2 (50S ribosomal protein L19 OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=rplS PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 36/86 (41.86%), Postives = 59/86 (68.60%), Query Frame = 1
Query:  433 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            +IP  +PG  V++   + E  R R+   +G+VI+R+  GIS  + +R++ +G+GVE  FP+++P + +I+V+   KVRRAKLYYLR
Sbjct:   16 DIPSFRPGDTVRVHAKVVEGTRERIQIFEGVVISRKGQGISEMYTVRKISSGIGVERTFPIHTPRVDKIEVVRYGKVRRAKLYYLR 101          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_STRT1 (50S ribosomal protein L19 OS=Streptococcus thermophilus (strain CNRZ 1066) GN=rplS PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 36/86 (41.86%), Postives = 59/86 (68.60%), Query Frame = 1
Query:  433 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            +IP  +PG  V++   + E  R R+   +G+VI+R+  GIS  + +R++ +G+GVE  FP+++P + +I+V+   KVRRAKLYYLR
Sbjct:   16 DIPSFRPGDTVRVHAKVVEGTRERIQIFEGVVISRKGQGISEMYTVRKISSGIGVERTFPIHTPRVDKIEVVRYGKVRRAKLYYLR 101          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_PROAC (50S ribosomal protein L19 OS=Propionibacterium acnes GN=rplS PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 41/98 (41.84%), Postives = 60/98 (61.22%), Query Frame = 1
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            + ++    + +IP+ +PG  V++ V + E  R RV    GIVI+R   G+  +F +R+L  G GVE  FPL+SP I +I+V     VRRAKLYYLR +
Sbjct:    6 DEIDKASMRDDIPEFRPGDSVKVHVKVVEGSRTRVQVFSGIVISRTGGGVQESFTVRKLSFGTGVERTFPLHSPIIDKIEVDRHGAVRRAKLYYLRGR 103          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_LEPCP (50S ribosomal protein L19 OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=rplS PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 42/105 (40.00%), Postives = 68/105 (64.76%), Query Frame = 1
Query:  382 IMQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            ++Q L++E +  +   + IP   PG  V + V V+   ++R+   +G+VIA+RN G++++F +R++ +G GVE  F LYSP I  I+V  +  VRRAKLYYLR +
Sbjct:    3 LIQQLEQEEIARLN--KVIPVFAPGDTVIVSVNVVEGTRKRLQAYEGVVIAKRNRGLNSSFIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLYYLRQR 105          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_ENT38 (50S ribosomal protein L19 OS=Enterobacter sp. (strain 638) GN=rplS PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 38/96 (39.58%), Postives = 63/96 (65.62%), Query Frame = 1
Query:  409 VENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            +E  + ++++P  +PG  V++KV V+   K+R+   +G+VIA RN G+ + F +R++  G GVE +F  +SP I  I V  +  VR+AKLYYLR++
Sbjct:    8 IEQEQMKQDVPSFRPGDSVEVKVWVVEGTKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVIDSISVKRRGAVRKAKLYYLRER 103          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_DESMR (50S ribosomal protein L19 OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=rplS PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 38/102 (37.25%), Postives = 67/102 (65.69%), Query Frame = 1
Query:  385 MQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            M ++D+  +E  + + +IP  +PG  +++ + +I   K R+   +G V+  R  G+ +TF +R++  GVGVE +FP++SP I  I+V+ + KVRR++LYYLR
Sbjct:    1 MNVIDQ--LEREQMRMDIPAFRPGDTIKVHLRIIEGEKERIQVFQGAVLRLRKGGVDSTFTVRKVSDGVGVERVFPMHSPFIERIEVVAQGKVRRSRLYYLR 100          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_CYTH3 (50S ribosomal protein L19 OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=rplS PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 39/90 (43.33%), Postives = 59/90 (65.56%), Query Frame = 1
Query:  427 QREIPDIKPGYIVQLKVVIPEN-KRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            Q+ +P+ K G  + + V I E  K R+   +G+VI +RN+G   +F +R++ AG+ VE +FP  SP I +I+VL    VRRA+L+YLRDK
Sbjct:   16 QKALPEFKAGDTINVHVKIKEGAKERIQQYQGLVIQKRNSGNGASFTVRKISAGIAVERIFPTMSPFIDKIEVLRAGAVRRARLFYLRDK 105          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_CLOBL (50S ribosomal protein L19 OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=rplS PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 42/99 (42.42%), Postives = 62/99 (62.63%), Query Frame = 1
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 696
            +A+E  + + ++P+   G  V++   I E  R RV   +G V+ R+N G   TF +RR+   V VE  FP+ SP I +I+V+ K KVRRAKLYYLRD++
Sbjct:    6 KAIEAEQVRSDLPEFNVGDTVKVHQKIKEGTRERVQVFEGTVLKRQNGGARETFTVRRVAYNVAVEKTFPVNSPLIEKIQVVRKGKVRRAKLYYLRDRV 104          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_CLOBK (50S ribosomal protein L19 OS=Clostridium botulinum (strain Okra / Type B1) GN=rplS PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 42/99 (42.42%), Postives = 62/99 (62.63%), Query Frame = 1
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 696
            +A+E  + + ++P+   G  V++   I E  R RV   +G V+ R+N G   TF +RR+   V VE  FP+ SP I +I+V+ K KVRRAKLYYLRD++
Sbjct:    6 KAIEAEQVRSDLPEFNVGDTVKVHQKIKEGTRERVQVFEGTVLKRQNGGARETFTVRRVAYNVAVEKTFPVNSPLIEKIQVVRKGKVRRAKLYYLRDRV 104          
The following BLAST results are available for this feature:
BLAST of CF831998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL19_STRTD2.007e-1341.8650S ribosomal protein L19 OS=Streptococcus thermop... [more]
RL19_STRT22.007e-1341.8650S ribosomal protein L19 OS=Streptococcus thermop... [more]
RL19_STRT12.007e-1341.8650S ribosomal protein L19 OS=Streptococcus thermop... [more]
RL19_PROAC2.007e-1341.8450S ribosomal protein L19 OS=Propionibacterium acn... [more]
RL19_LEPCP2.007e-1340.0050S ribosomal protein L19 OS=Leptothrix cholodnii ... [more]
RL19_ENT382.007e-1339.5850S ribosomal protein L19 OS=Enterobacter sp. (str... [more]
RL19_DESMR2.007e-1337.2550S ribosomal protein L19 OS=Desulfovibrio magneti... [more]
RL19_CYTH32.007e-1343.3350S ribosomal protein L19 OS=Cytophaga hutchinsoni... [more]
RL19_CLOBL2.007e-1342.4250S ribosomal protein L19 OS=Clostridium botulinum... [more]
RL19_CLOBK2.007e-1342.4250S ribosomal protein L19 OS=Clostridium botulinum... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831998 ID=CF831998; Name=CF831998; organism=Citrus sinensis; type=EST; length=741bp
GGGAGCATCCGATTAATTCAAAGGCATGCCCTTACCAGCTCAAACACTTG
TTCAATCCCAAACGGAGTCGTTTCAACCAAATCTGTCGGTCATTCGTTCC
ATTCTTTCAACAATTTTCTATCCCGCTCGCTCCACTTGTTAGCTACTCGC
TCGCAGGTAAAATATGGCTATCAAACCGAGTCTTGGGGTTCTTCGAACTA
TTACATTAGAACTAGTGGGCCTGGTTTGTTTCCACCAGCAATGATGGAGC
CACATTTTGCCAACAGGTGTATTTCAACATCGGAAAGTTCAGTTGAATCA
GCTTCATATCCTCCTGCTGCTGCTTCCTCTGATTTGGCTCCCCGCATCAA
ATTTAAGAGGCTTGATAAAACTGCCAGGCATATAATGCAGATTCTAGATA
AGGAAGCAGTGGAGAATGTGAAGTCACAGAGGGAGATCCCCGATATAAAG
CCTGGTTATATCGTGCAACTAAAAGTGGTAATTCCAGAGAACAAGAGACG
TGTTTCAACTTTAAAGGGTATTGTTATAGCAAGGCGTAATGCTGGTATAA
GTACTACATTTAGATTGAGGAGGCTGGTAGCAGGGGTTGGAGTCGAATCT
CTTTTCCCTTTGTACTCACCTAATATACTAGAAATAAAGGTGCTGGACAA
GAAGAAAGTGAGGAGGGCCAAGCTTTACTATCTGAGGGATAAGCTGAATC
CACTTAGAAATAAATAAGAAGCTTTATTGGTGGGAGGATTC
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