CF831998
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_SALAI (50S ribosomal protein L19 OS=Salinispora arenicola (strain CNS-205) GN=rplS PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13 Identity = 42/103 (40.78%), Postives = 65/103 (63.11%), Query Frame = 1 Query: 385 MQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690 M ILD A++ + ++PD + G V++ V+ N+ RV +G+VI R+ G+ TF +R++ GVGVE +P+ SP I I+V+ + VRRAKLYYLR+ Sbjct: 1 MNILD--ALDAQSKRTDLPDFRAGDTVKVHARVVEGNRSRVQIFQGVVIRRQGDGLRETFLVRKISFGVGVERTYPINSPAIDRIEVVTRGDVRRAKLYYLRE 101
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_PROVI (50S ribosomal protein L19 OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=rplS PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13 Identity = 40/98 (40.82%), Postives = 61/98 (62.24%), Query Frame = 1 Query: 403 EAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693 + VE ++ E PDI PG V++++ VI K R+ G+VI+ R AG + T +R++ GVGVE + P+ SPN+ + VL K RR+KL+YLR + Sbjct: 6 QLVEATQAGVETPDIYPGDSVRIQLRVIEGEKERLQAFDGVVISDRGAGTNKTITVRKISHGVGVERIIPINSPNVESVTVLKHGKARRSKLFYLRKR 103
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_PELPD (50S ribosomal protein L19 OS=Pelobacter propionicus (strain DSM 2379) GN=rplS PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13 Identity = 37/94 (39.36%), Postives = 65/94 (69.15%), Query Frame = 1 Query: 409 VENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687 +E + ++ + K G V+++V I E +K+R+ +G+VI+R+N GI +F +R++ G+GVE +FPL+SP + ++++ + VRRAKLYYLR Sbjct: 7 LEFEQMKKNVAPFKVGDTVKVQVKIVEGDKQRIQAYQGVVISRQNGGIRESFTVRKISNGIGVERIFPLHSPILETVEIVTRGHVRRAKLYYLR 100
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_PECCP (50S ribosomal protein L19 OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rplS PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13 Identity = 37/96 (38.54%), Postives = 65/96 (67.71%), Query Frame = 1 Query: 409 VENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693 +E+ + ++++P +PG V++KV V+ +K+R+ +G+VIA RN G+ + F +R++ G GVE +F +SP + I V + VR+AKLYYLR++ Sbjct: 8 IEDEQMKQDVPAFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSIAVKRRGAVRKAKLYYLRER 103
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_NOCSJ (50S ribosomal protein L19 OS=Nocardioides sp. (strain BAA-499 / JS614) GN=rplS PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13 Identity = 38/93 (40.86%), Postives = 61/93 (65.59%), Query Frame = 1 Query: 415 NVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690 N + ++PD + G V++ V + E N+ RV +G+VI + +G+ +F +R++ GVGVE FPL+SP +I+V+ + VRRAKLYYLR+ Sbjct: 10 NATKRTDLPDFRSGDTVKVHVKVVEGNRSRVQIFQGVVIRLQGSGVGRSFTVRKVSFGVGVERTFPLHSPIFEQIEVVTRGDVRRAKLYYLRN 102
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_MARMS (50S ribosomal protein L19 OS=Marinomonas sp. (strain MWYL1) GN=rplS PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13 Identity = 36/98 (36.73%), Postives = 64/98 (65.31%), Query Frame = 1 Query: 403 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693 + +E + +E+P PG + ++V + E R R+ +GIVI++RN G+++ F +R++ +G+GVE F YSP + I+V + VR+AK+YYLR++ Sbjct: 9 QQIEAEQMTKEVPAFGPGDTIVVQVKVKEGSRERLQAYEGIVISKRNRGLNSAFTVRKISSGIGVERAFQTYSPLVESIEVKRRGDVRQAKIYYLRER 106
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_HALHL (50S ribosomal protein L19 OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=rplS PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13 Identity = 42/105 (40.00%), Postives = 66/105 (62.86%), Query Frame = 1 Query: 379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690 +++ L++E +E K +P+ PG V ++V + E R RV +G+VIA+R G++++F LR+ G GVE +F YSP I IKV + VR+AKLY+LR+ Sbjct: 2 NVIDELEREQIETCK--HTVPEFAPGDTVLVQVWVREGGRERVQPFEGVVIAKRKRGLNSSFTLRKTSHGEGVERVFQTYSPQIESIKVKRRGDVRQAKLYHLRE 104
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_ESCF3 (50S ribosomal protein L19 OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=rplS PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13 Identity = 37/96 (38.54%), Postives = 64/96 (66.67%), Query Frame = 1 Query: 409 VENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693 +E + ++++P +PG V++KV V+ +K+R+ +G+VIA RN G+ + F +R++ G GVE +F +SP + I V + VR+AKLYYLR++ Sbjct: 8 LEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRER 103
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_ERWCT (50S ribosomal protein L19 OS=Erwinia carotovora subsp. atroseptica GN=rplS PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13 Identity = 38/96 (39.58%), Postives = 65/96 (67.71%), Query Frame = 1 Query: 409 VENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693 +E+ + ++++P +PG V++KV V+ +K+R+ +G+VIA RN G+ + F +R++ G GVE +F +SP I I V + VR+AKLYYLR++ Sbjct: 8 IEDEQMKQDVPAFRPGDSVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVIDSIAVKRRGAVRKAKLYYLRER 103
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_ECOUT (50S ribosomal protein L19 OS=Escherichia coli (strain UTI89 / UPEC) GN=rplS PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13 Identity = 37/96 (38.54%), Postives = 64/96 (66.67%), Query Frame = 1 Query: 409 VENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693 +E + ++++P +PG V++KV V+ +K+R+ +G+VIA RN G+ + F +R++ G GVE +F +SP + I V + VR+AKLYYLR++ Sbjct: 8 LEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRER 103 The following BLAST results are available for this feature:
BLAST of CF831998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF831998 ID=CF831998; Name=CF831998; organism=Citrus sinensis; type=EST; length=741bpback to top |