CF831998

Overview
NameCF831998
Unique NameCF831998
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_SALAI (50S ribosomal protein L19 OS=Salinispora arenicola (strain CNS-205) GN=rplS PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13
Identity = 42/103 (40.78%), Postives = 65/103 (63.11%), Query Frame = 1
Query:  385 MQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690
            M ILD  A++    + ++PD + G  V++   V+  N+ RV   +G+VI R+  G+  TF +R++  GVGVE  +P+ SP I  I+V+ +  VRRAKLYYLR+
Sbjct:    1 MNILD--ALDAQSKRTDLPDFRAGDTVKVHARVVEGNRSRVQIFQGVVIRRQGDGLRETFLVRKISFGVGVERTYPINSPAIDRIEVVTRGDVRRAKLYYLRE 101          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_PROVI (50S ribosomal protein L19 OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=rplS PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13
Identity = 40/98 (40.82%), Postives = 61/98 (62.24%), Query Frame = 1
Query:  403 EAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            + VE  ++  E PDI PG  V++++ VI   K R+    G+VI+ R AG + T  +R++  GVGVE + P+ SPN+  + VL   K RR+KL+YLR +
Sbjct:    6 QLVEATQAGVETPDIYPGDSVRIQLRVIEGEKERLQAFDGVVISDRGAGTNKTITVRKISHGVGVERIIPINSPNVESVTVLKHGKARRSKLFYLRKR 103          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_PELPD (50S ribosomal protein L19 OS=Pelobacter propionicus (strain DSM 2379) GN=rplS PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13
Identity = 37/94 (39.36%), Postives = 65/94 (69.15%), Query Frame = 1
Query:  409 VENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            +E  + ++ +   K G  V+++V I E +K+R+   +G+VI+R+N GI  +F +R++  G+GVE +FPL+SP +  ++++ +  VRRAKLYYLR
Sbjct:    7 LEFEQMKKNVAPFKVGDTVKVQVKIVEGDKQRIQAYQGVVISRQNGGIRESFTVRKISNGIGVERIFPLHSPILETVEIVTRGHVRRAKLYYLR 100          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_PECCP (50S ribosomal protein L19 OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rplS PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13
Identity = 37/96 (38.54%), Postives = 65/96 (67.71%), Query Frame = 1
Query:  409 VENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            +E+ + ++++P  +PG  V++KV V+  +K+R+   +G+VIA RN G+ + F +R++  G GVE +F  +SP +  I V  +  VR+AKLYYLR++
Sbjct:    8 IEDEQMKQDVPAFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSIAVKRRGAVRKAKLYYLRER 103          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_NOCSJ (50S ribosomal protein L19 OS=Nocardioides sp. (strain BAA-499 / JS614) GN=rplS PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13
Identity = 38/93 (40.86%), Postives = 61/93 (65.59%), Query Frame = 1
Query:  415 NVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690
            N   + ++PD + G  V++ V + E N+ RV   +G+VI  + +G+  +F +R++  GVGVE  FPL+SP   +I+V+ +  VRRAKLYYLR+
Sbjct:   10 NATKRTDLPDFRSGDTVKVHVKVVEGNRSRVQIFQGVVIRLQGSGVGRSFTVRKVSFGVGVERTFPLHSPIFEQIEVVTRGDVRRAKLYYLRN 102          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_MARMS (50S ribosomal protein L19 OS=Marinomonas sp. (strain MWYL1) GN=rplS PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13
Identity = 36/98 (36.73%), Postives = 64/98 (65.31%), Query Frame = 1
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            + +E  +  +E+P   PG  + ++V + E  R R+   +GIVI++RN G+++ F +R++ +G+GVE  F  YSP +  I+V  +  VR+AK+YYLR++
Sbjct:    9 QQIEAEQMTKEVPAFGPGDTIVVQVKVKEGSRERLQAYEGIVISKRNRGLNSAFTVRKISSGIGVERAFQTYSPLVESIEVKRRGDVRQAKIYYLRER 106          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_HALHL (50S ribosomal protein L19 OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=rplS PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13
Identity = 42/105 (40.00%), Postives = 66/105 (62.86%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690
            +++  L++E +E  K    +P+  PG  V ++V + E  R RV   +G+VIA+R  G++++F LR+   G GVE +F  YSP I  IKV  +  VR+AKLY+LR+
Sbjct:    2 NVIDELEREQIETCK--HTVPEFAPGDTVLVQVWVREGGRERVQPFEGVVIAKRKRGLNSSFTLRKTSHGEGVERVFQTYSPQIESIKVKRRGDVRQAKLYHLRE 104          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_ESCF3 (50S ribosomal protein L19 OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=rplS PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13
Identity = 37/96 (38.54%), Postives = 64/96 (66.67%), Query Frame = 1
Query:  409 VENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            +E  + ++++P  +PG  V++KV V+  +K+R+   +G+VIA RN G+ + F +R++  G GVE +F  +SP +  I V  +  VR+AKLYYLR++
Sbjct:    8 LEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRER 103          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_ERWCT (50S ribosomal protein L19 OS=Erwinia carotovora subsp. atroseptica GN=rplS PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13
Identity = 38/96 (39.58%), Postives = 65/96 (67.71%), Query Frame = 1
Query:  409 VENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            +E+ + ++++P  +PG  V++KV V+  +K+R+   +G+VIA RN G+ + F +R++  G GVE +F  +SP I  I V  +  VR+AKLYYLR++
Sbjct:    8 IEDEQMKQDVPAFRPGDSVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVIDSIAVKRRGAVRKAKLYYLRER 103          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_ECOUT (50S ribosomal protein L19 OS=Escherichia coli (strain UTI89 / UPEC) GN=rplS PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13
Identity = 37/96 (38.54%), Postives = 64/96 (66.67%), Query Frame = 1
Query:  409 VENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            +E  + ++++P  +PG  V++KV V+  +K+R+   +G+VIA RN G+ + F +R++  G GVE +F  +SP +  I V  +  VR+AKLYYLR++
Sbjct:    8 LEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRER 103          
The following BLAST results are available for this feature:
BLAST of CF831998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL19_SALAI2.621e-1340.7850S ribosomal protein L19 OS=Salinispora arenicola... [more]
RL19_PROVI2.621e-1340.8250S ribosomal protein L19 OS=Prosthecochloris vibr... [more]
RL19_PELPD2.621e-1339.3650S ribosomal protein L19 OS=Pelobacter propionicu... [more]
RL19_PECCP2.621e-1338.5450S ribosomal protein L19 OS=Pectobacterium caroto... [more]
RL19_NOCSJ2.621e-1340.8650S ribosomal protein L19 OS=Nocardioides sp. (str... [more]
RL19_MARMS2.621e-1336.7350S ribosomal protein L19 OS=Marinomonas sp. (stra... [more]
RL19_HALHL2.621e-1340.0050S ribosomal protein L19 OS=Halorhodospira haloph... [more]
RL19_ESCF32.621e-1338.5450S ribosomal protein L19 OS=Escherichia fergusoni... [more]
RL19_ERWCT2.621e-1339.5850S ribosomal protein L19 OS=Erwinia carotovora su... [more]
RL19_ECOUT2.621e-1338.5450S ribosomal protein L19 OS=Escherichia coli (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831998 ID=CF831998; Name=CF831998; organism=Citrus sinensis; type=EST; length=741bp
GGGAGCATCCGATTAATTCAAAGGCATGCCCTTACCAGCTCAAACACTTG
TTCAATCCCAAACGGAGTCGTTTCAACCAAATCTGTCGGTCATTCGTTCC
ATTCTTTCAACAATTTTCTATCCCGCTCGCTCCACTTGTTAGCTACTCGC
TCGCAGGTAAAATATGGCTATCAAACCGAGTCTTGGGGTTCTTCGAACTA
TTACATTAGAACTAGTGGGCCTGGTTTGTTTCCACCAGCAATGATGGAGC
CACATTTTGCCAACAGGTGTATTTCAACATCGGAAAGTTCAGTTGAATCA
GCTTCATATCCTCCTGCTGCTGCTTCCTCTGATTTGGCTCCCCGCATCAA
ATTTAAGAGGCTTGATAAAACTGCCAGGCATATAATGCAGATTCTAGATA
AGGAAGCAGTGGAGAATGTGAAGTCACAGAGGGAGATCCCCGATATAAAG
CCTGGTTATATCGTGCAACTAAAAGTGGTAATTCCAGAGAACAAGAGACG
TGTTTCAACTTTAAAGGGTATTGTTATAGCAAGGCGTAATGCTGGTATAA
GTACTACATTTAGATTGAGGAGGCTGGTAGCAGGGGTTGGAGTCGAATCT
CTTTTCCCTTTGTACTCACCTAATATACTAGAAATAAAGGTGCTGGACAA
GAAGAAAGTGAGGAGGGCCAAGCTTTACTATCTGAGGGATAAGCTGAATC
CACTTAGAAATAAATAAGAAGCTTTATTGGTGGGAGGATTC
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