CF831998
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_ALKOO (50S ribosomal protein L19 OS=Alkaliphilus oremlandii (strain OhILAs) GN=rplS PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.939e-16 Identity = 46/105 (43.81%), Postives = 70/105 (66.67%), Query Frame = 1 Query: 385 MQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 696 M IL A E +K +++P+ G V++ V I E R R+ +GIVI R+ GI+ TF +RR+ +GVGVE FP++SP + +++V + +VRRAKLYYLRD++ Sbjct: 1 MDILRTLASEQLK--KDVPEFSNGDTVKVHVKIKEGSRERIQIFEGIVIKRQGGGIAETFTVRRIASGVGVERTFPVHSPRVEKVEVTRRGQVRRAKLYYLRDRV 103
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_TROWT (50S ribosomal protein L19 OS=Tropheryma whipplei (strain Twist) GN=rplS PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.533e-16 Identity = 45/96 (46.88%), Postives = 65/96 (67.71%), Query Frame = 1 Query: 403 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687 +A++ + + +IPD PG V++ V I E R RV +G+VIARR G+ TF +R++ VGVE +FPL+SP+I I+V+ K VRRAKLYY+R Sbjct: 5 DALDALSIKADIPDFSPGDTVRVYVNITEGDRSRVQVFQGVVIARRGFGVRQTFTVRKISFQVGVERIFPLHSPSINRIEVVTKGSVRRAKLYYIR 100
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_TROW8 (50S ribosomal protein L19 OS=Tropheryma whipplei (strain TW08/27) GN=rplS PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.533e-16 Identity = 45/96 (46.88%), Postives = 65/96 (67.71%), Query Frame = 1 Query: 403 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687 +A++ + + +IPD PG V++ V I E R RV +G+VIARR G+ TF +R++ VGVE +FPL+SP+I I+V+ K VRRAKLYY+R Sbjct: 5 DALDALSIKADIPDFSPGDTVRVYVNITEGDRSRVQVFQGVVIARRGFGVRQTFTVRKISFQVGVERIFPLHSPSINRIEVVTKGSVRRAKLYYIR 100
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_STAAN (50S ribosomal protein L19 OS=Staphylococcus aureus (strain N315) GN=rplS PE=1 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.533e-16 Identity = 45/96 (46.88%), Postives = 65/96 (67.71%), Query Frame = 1 Query: 403 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687 EAV + + ++P +PG +++ V I E R R+ +GIVI RR G+S TF +R++ +GVGVE FPL++P I +I+V + KVRRAKLYYLR Sbjct: 8 EAVTKSQLRTDLPSFRPGDTLRVHVRIIEGTRERIQVFEGIVIKRRGGGVSETFTVRKISSGVGVERTFPLHTPKIEKIEVKRRGKVRRAKLYYLR 103
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_STAAM (50S ribosomal protein L19 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rplS PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.533e-16 Identity = 45/96 (46.88%), Postives = 65/96 (67.71%), Query Frame = 1 Query: 403 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687 EAV + + ++P +PG +++ V I E R R+ +GIVI RR G+S TF +R++ +GVGVE FPL++P I +I+V + KVRRAKLYYLR Sbjct: 8 EAVTKSQLRTDLPSFRPGDTLRVHVRIIEGTRERIQVFEGIVIKRRGGGVSETFTVRKISSGVGVERTFPLHTPKIEKIEVKRRGKVRRAKLYYLR 103
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_STAA9 (50S ribosomal protein L19 OS=Staphylococcus aureus (strain JH9) GN=rplS PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.533e-16 Identity = 45/96 (46.88%), Postives = 65/96 (67.71%), Query Frame = 1 Query: 403 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687 EAV + + ++P +PG +++ V I E R R+ +GIVI RR G+S TF +R++ +GVGVE FPL++P I +I+V + KVRRAKLYYLR Sbjct: 8 EAVTKSQLRTDLPSFRPGDTLRVHVRIIEGTRERIQVFEGIVIKRRGGGVSETFTVRKISSGVGVERTFPLHTPKIEKIEVKRRGKVRRAKLYYLR 103
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_STAA2 (50S ribosomal protein L19 OS=Staphylococcus aureus (strain JH1) GN=rplS PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.533e-16 Identity = 45/96 (46.88%), Postives = 65/96 (67.71%), Query Frame = 1 Query: 403 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687 EAV + + ++P +PG +++ V I E R R+ +GIVI RR G+S TF +R++ +GVGVE FPL++P I +I+V + KVRRAKLYYLR Sbjct: 8 EAVTKSQLRTDLPSFRPGDTLRVHVRIIEGTRERIQVFEGIVIKRRGGGVSETFTVRKISSGVGVERTFPLHTPKIEKIEVKRRGKVRRAKLYYLR 103
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_STAA1 (50S ribosomal protein L19 OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=rplS PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.533e-16 Identity = 45/96 (46.88%), Postives = 65/96 (67.71%), Query Frame = 1 Query: 403 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687 EAV + + ++P +PG +++ V I E R R+ +GIVI RR G+S TF +R++ +GVGVE FPL++P I +I+V + KVRRAKLYYLR Sbjct: 8 EAVTKSQLRTDLPSFRPGDTLRVHVRIIEGTRERIQVFEGIVIKRRGGGVSETFTVRKISSGVGVERTFPLHTPKIEKIEVKRRGKVRRAKLYYLR 103
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_OCHA4 (50S ribosomal protein L19 OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=rplS PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.533e-16 Identity = 42/103 (40.78%), Postives = 70/103 (67.96%), Query Frame = 1 Query: 382 IMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687 I++ L+ E ++ +R++PD +PG V+++V + E R RV +G+ IAR AG++ F +R++ G GVE +FP+YSP + ++++ + KVRRAKLYYLR Sbjct: 4 IIRQLEAEQAAKIEEKRKLPDFQPGDTVRVQVRVTEGTRTRVQAYEGVCIARSGAGLNENFTVRKISYGEGVERVFPVYSPIVEGVELVRRGKVRRAKLYYLR 106
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_NOCFA (50S ribosomal protein L19 OS=Nocardia farcinica GN=rplS PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.533e-16 Identity = 44/95 (46.32%), Postives = 62/95 (65.26%), Query Frame = 1 Query: 409 VENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690 V+ + ++PD +PG + + V VI +K R+ KG+VI R+ GI TF +R++ GVGVE FP++SPNI I V+ + VRRAKLYYLRD Sbjct: 7 VDEKSLRSDVPDFRPGDTLNVHVKVIEGSKERIQVFKGVVIRRQGGGIRETFTVRKVSFGVGVERTFPVHSPNIDHIDVVTRGDVRRAKLYYLRD 101 The following BLAST results are available for this feature:
BLAST of CF831998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF831998 ID=CF831998; Name=CF831998; organism=Citrus sinensis; type=EST; length=741bpback to top |