CF832012

Overview
NameCF832012
Unique NameCF832012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_RHOSK (Histidine ammonia-lyase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=hutH PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.596e-27
Identity = 76/227 (33.48%), Postives = 121/227 (53.30%), Query Frame = 3
Query:   93 LPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            +P ST R  M +++ +L +G SG+R++I+  +  +L   +TP +P +G++ ASGDL PL+++A ++ G   ++     G  +    A   AG     L PKEGLAL+NGT   +  A   LFE    A  + ++SA+  + + G         H L+ H GQIEAAA M  +L+GS    A ++ H      +  QD Y +R  PQ  G  ++V+R A  ++  E N
Sbjct:   90 MPPSTARLMMALKLLSLGRGASGVRWKIVALLEGMLAAGVTPVIPAQGSVGASGDLAPLAHMAAVMIGEGEAEV---GGRRLPGAAALAHAGLAPVALGPKEGLALINGTQFSTAYALAGLFEGWRAAQAALVISALSTDAIMGSTAPLRPEIHALRGHAGQIEAAATMRALLEGS----AIRESHREG--DQRVQDPYCIRCQPQVTGAAMDVLRMAAGTLATEAN 307          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_RALSO (Histidine ammonia-lyase OS=Ralstonia solanacearum GN=hutH PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.596e-27
Identity = 76/238 (31.93%), Postives = 124/238 (52.10%), Query Frame = 3
Query:   60 IFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            I  +   +   L  +  R  +L++  +L +GYSG+R  +++ +  +LN  I PC+P +G++ ASGDL PL+++   + G  +++    NG    A+EA   AG     L  KEGLAL+NGT V + LA   LF A  L   + +  A+  +  +G     D   H ++   GQI  AA+   +L GS    A ++ H +   +   QD Y+LR  PQ +G  +++IR A  ++  E N
Sbjct:   84 ILSHAVGTGQDLDDNVARLVLLMKAASLARGYSGVRRVVIDTLLAMLNAGIVPCIPSKGSVGASGDLAPLAHMTLAMLGEGDARV---NGVRKPAREALAAAGIAPIALAAKEGLALINGTQVSTALALNGLFLAERLLQAATVAGALSVDAAKGSDAPFDPRVHTVRGQAGQIATAAVYRGLLAGS----AIRRSHLVGDTR--VQDPYSLRCQPQVMGACLDLIRQAGATLLTEAN 312          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_BACCN (Histidine ammonia-lyase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=hutH PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.391e-27
Identity = 79/251 (31.47%), Postives = 130/251 (51.79%), Query Frame = 3
Query:   24 LQKELIRFLNAGIF-GNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            +QKE ++ L   +   +        P   +R  +++R NT+L+G SG+R  ++  + +L+N NI P +P +G++ ASGDL PLS++A +L G          G+ + A  A  + G    EL+ KEGLAL+NGT   +    +   EA  LA  SE+++++  E ++G  +  D   HK + +  QIE A  + +IL  S  V    +L          QD Y+LR  PQ  G   +V+ +  + +E E+N
Sbjct:   66 IQKEDVKELQHNLIQSHACGVGDPFPEEVSRGMLILRANTMLKGVSGVRPLVVNMLLELVNRNIHPVIPQQGSLGASGDLAPLSHLALVLLGEGE---VFYKGKRVHAMIALTEEGLEPIELEAKEGLALINGTQAMTAQGILSYIEAETLAYQSELIASMTLEGLRGIIDAFDENVHKARGYKEQIEVAQRIRNILQDSKLVTKQGELR--------VQDAYSLRCIPQVHGASWQVLHYVKEKLEIEMN 305          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_PSYWF (Histidine ammonia-lyase OS=Psychrobacter sp. (strain PRwf-1) GN=hutH PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.428e-27
Identity = 76/238 (31.93%), Postives = 123/238 (51.68%), Query Frame = 3
Query:   60 IFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            I  +   +   L     R  M+++V +L QG+SG+R ++++ +  L+NH+I P +P +G++ ASGDL PLS++   L G+        NG+ + A++A  QAG     L  KEGLAL+NGT V + L     F A +L   + ++ A+  +  +G     D   H+L+ H GQI+ A     ++ GS     A      D +Q P    Y LR  PQ +G  +++I  A  ++  E N
Sbjct:   84 IVSHSVGTGERLEDGVVRLIMVMKVASLAQGFSGVRRKVIDGLIGLINHDIIPHIPAKGSVGASGDLAPLSHMTLTLLGQGTCYI---NGQEMSAKDALAQAGLEPVTLAAKEGLALINGTQVSTALTLRGYFLARDLVSTATVVGALSVDAARGSDSPFDARIHELRGHHGQIQVAKAHRRLIAGSEI--RASHTENDDRVQDP----YCLRCQPQVVGACLDIINQAGHTLLIEAN 312          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_GEOKA (Histidine ammonia-lyase OS=Geobacillus kaustophilus GN=hutH PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.428e-27
Identity = 74/221 (33.48%), Postives = 115/221 (52.04%), Query Frame = 3
Query:  111 RAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            RA +L+R N LL+GYSG+R  ++E +   LN  I P +P +G++ ASGDL PL+++A    G   +      G  + A +A  QAG     LQ KEGLAL+NGT V + + ++   EA  LA  SE ++A+  E + G  +  D   H  +    Q+E A  +   L GS               ++  QD Y++R  PQ  G  +  +R+  +++E E+N
Sbjct:   96 RAMLLLRANALLKGYSGVRPAVIEQLLAFLNTGIHPIVPQQGSLGASGDLAPLAHLALAFAGEGEAMY---QGRRMPAAQALSQAGISPLSLQEKEGLALINGTQVMTAVGALAYLEAEQLAYDSEWIAALTIEALYGIVDAFDARIHAARGFQEQVEVAERLRRYLAGSQLTTRQG--------ERRVQDAYSIRCLPQVHGASLRALRYVKETLEIEMN 305          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_BURA4 (Histidine ammonia-lyase OS=Burkholderia ambifaria (strain MC40-6) GN=hutH PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.428e-27
Identity = 78/250 (31.20%), Postives = 128/250 (51.20%), Query Frame = 3
Query:   24 LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            LQK L+     G+          +  S+ R  M +++++L +G+SGIR E+++A+  L N ++ P +P++G++ ASGDL PL++++ +L G       G     +D       AG     LQ KEGLAL+NGT   + LA   +F   +L   + +  A+  +   G  +  D   H+L+ H GQIEAAA    +LDGS    + +   ++       QD Y+LR  PQ +G  ++ +R A   +  E N
Sbjct:   74 LQKNLVLSHAVGV-------GEPMARSSVRLLMALKLSSLGRGHSGIRREVMDALITLFNADVLPLIPVKGSVGASGDLAPLAHMSAVLLGVGEVFIRGERASALDGLRV---AGLAPLTLQAKEGLALLNGTQASTALALDNMFSIEDLYRTALVAGALSVDAAAGSVKPFDARIHELRGHRGQIEAAAAYRDLLDGSPINQSHRDCDKV-------QDPYSLRCQPQVMGACLDQMRHAADVLLIEAN 306          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_SILPO (Histidine ammonia-lyase OS=Silicibacter pomeroyi GN=hutH PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.554e-27
Identity = 73/227 (32.16%), Postives = 124/227 (54.63%), Query Frame = 3
Query:   93 LPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            +P    R  M++++ +L +G SG+R+E++  + ++L  ++TP +P++G++ ASGDL PL+++  ++ G   ++     G+ +   EA  +AG     L PKEGLA +NGT   +  A   LF A   A  S + +A+  + + G         H L+ H GQI+AAA M  +LDGS      ++ H     +   QD Y +R  PQ  G  ++V+R A +++E E N
Sbjct:   92 IPRRMARLMMVLKLLSLGRGASGVRWELITLLQEMLARDVTPVIPVQGSVGASGDLAPLAHMTAVIIGAGEAEY---QGQRLPGAEALARAGLTPIALGPKEGLAFINGTQFSTAFALAGLFGAWRAATSSLVTAALSTDAIMGSTAPLQPEIHALRGHRGQIDAAARMRALLDGSE----IRESHREGDTR--VQDPYCIRCQPQVTGAAMDVLRQAAQTLEIEAN 309          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_GLUDA (Histidine ammonia-lyase OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=hutH PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.554e-27
Identity = 77/257 (29.96%), Postives = 131/257 (50.97%), Query Frame = 3
Query:    3 RTKTVGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            RT+   A  ++L R L   +  +       +   T R  +L++ N L +G+SG+R EI++ + ++ N  + P +P +G++ ASGDL PL+++  +L G   ++    +G ++   +A +  G    EL PKEGLAL+NGT   + LA + LF+A  +   + +  A+  +  +G     D   H L+   GQIE AA+   ++  S    A +  H  D   +  QD Y LR  PQ +G  ++ +R A   +  E N
Sbjct:   67 RTRIADANLRDLQRNL---VLSHAAGIGAPMDDRTVRLILLLKANGLARGHSGVRPEIVDLLLEMGNRGVLPVIPQKGSVGASGDLAPLAHMTAVLIGAGQARV---DGRVLPGDQALRAVGLAPVELGPKEGLALLNGTQASTALALVALFDAERVFQAALVTGALTLDAARGTDAPFDPRLHALRGQKGQIECAALYRALMADS----AIRASHRED--DERVQDPYCLRCQPQVMGACLDSLRHAASVLLIEAN 311          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_RHORT (Histidine ammonia-lyase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=hutH PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.865e-27
Identity = 79/238 (33.19%), Postives = 124/238 (52.10%), Query Frame = 3
Query:   60 IFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            I  + T     +  +T R  + ++  +L  G SGIR EI++A+  L N ++ P +P +G++ ASGDL PL+++   L G  + +     G ++ A E    AG     L+ KEGLAL+NGT V + LA   LFE       + +  A+  E + G     D     L+   GQI+ AA+   +LDGS  +NAA +     P  +  QD Y+LR  PQ +G  ++ +RFA +++  E N
Sbjct:   82 ILSHATGMGAPIADATVRLILAIKAASLAVGASGIRAEIVDALLALANADVLPVIPSKGSVGASGDLAPLAHLCCALLGIGSVR---HKGAVLPAGEGLAIAGLSPITLRAKEGLALINGTQVSTALALAGLFEIERAFAAAILAGALSVEAVMGSHRPFDPRISALRGQFGQIDVAALFRLLLDGSP-LNAAHQ----GPSCERVQDPYSLRCQPQVMGAVLDQMRFAARTLTIEAN 311          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_BURCM (Histidine ammonia-lyase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=hutH PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.865e-27
Identity = 78/250 (31.20%), Postives = 130/250 (52.00%), Query Frame = 3
Query:   24 LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            LQK L+     G+          +  S+ R  M +++++L +G+SGIR E+++A+  L N ++ P +P++G++ ASGDL PL++++ +L G          GE   A +  + AG     LQ KEGLAL+NGT   + LA   +F   +L   + +  A+  +   G  +  D   H+L+ H GQI+AAA    +LDGS    + +   ++       QD Y+LR  PQ +G  ++ +R A   +  E N
Sbjct:   74 LQKNLVLSHAVGV-------GEPMARSSVRLLMALKLSSLGRGHSGIRREVMDALITLFNADVLPLIPVKGSVGASGDLAPLAHMSAVLLG---VGEVFIRGERASALDGLRVAGLAPLTLQAKEGLALLNGTQASTALALDNMFSIEDLYRTALVAGALSVDAAAGSVKPFDARIHELRGHRGQIDAAAAYRDLLDGSPINQSHRDCDKV-------QDPYSLRCQPQVMGACLDQMRHAADVLLIEAN 306          
The following BLAST results are available for this feature:
BLAST of CF832012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251
Match NameE-valueIdentityDescription
HUTH_RHOSK2.596e-2733.48Histidine ammonia-lyase OS=Rhodobacter sphaeroides... [more]
HUTH_RALSO2.596e-2731.93Histidine ammonia-lyase OS=Ralstonia solanacearum ... [more]
HUTH_BACCN3.391e-2731.47Histidine ammonia-lyase OS=Bacillus cereus subsp. ... [more]
HUTH_PSYWF4.428e-2731.93Histidine ammonia-lyase OS=Psychrobacter sp. (stra... [more]
HUTH_GEOKA4.428e-2733.48Histidine ammonia-lyase OS=Geobacillus kaustophilu... [more]
HUTH_BURA44.428e-2731.20Histidine ammonia-lyase OS=Burkholderia ambifaria ... [more]
HUTH_SILPO7.554e-2732.16Histidine ammonia-lyase OS=Silicibacter pomeroyi G... [more]
HUTH_GLUDA7.554e-2729.96Histidine ammonia-lyase OS=Gluconacetobacter diazo... [more]
HUTH_RHORT9.865e-2733.19Histidine ammonia-lyase OS=Rhodospirillum rubrum (... [more]
HUTH_BURCM9.865e-2731.20Histidine ammonia-lyase OS=Burkholderia ambifaria ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C18_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832012 ID=CF832012; Name=CF832012; organism=Citrus sinensis; type=EST; length=774bp
GGAGAACCAAGACCGTCGGTGCTCTTCAGAAGGAGCTCATTAGATTTTTG
AACGCTGGAATCTTTGGAAACGGAACAGAGTCATCTCACACGCTACCTCA
CTCAACAACAAGGGCAGCCATGCTTGTGAGGGTTAACACTCTTCTCCAGG
GCTACTCTGGCATCCGATTTGAAATCCTGGAAGCGATCACAAAGCTGCTC
AATCACAACATCACTCCATGCCTCCCTCTTCGCGGCACAATCACTGCTTC
AGGGGATCTGGTTCCTCTTTCCTACATTGCCGGACTGCTCACCGGCCGGC
CCAATTCTAAGGCCACCGGGCCTAATGGAGAGATCATTGATGCCCAGGAA
GCCTCTAAACAAGCGGGTTTCGGGTTCTTTGAGTTGCAGCCTAAGGAGGG
TCTTGCTCTTGTCAATGGCACTGCTGTTGGTTCTGGCCTGGCTTCTATGG
TTCTGTTTGAGGCTAACAACCTTGCTCTGTTATCAGAAATTTTGTCAGCT
ATTTTTGCTGAAGTCATGCAAGGCAAACCTGAGTTCACTGATCACTTGAC
ACACAAATTGAAGCACCATCCTGGCCAAATTGAGGCTGCTGCTATAATGG
AACATATCCTCGATGGCAGCTCTTATGTTAACGCGGCTAAGAAGTTGCAT
GAGATTGATCCTCTGCAGAAGCCGAAACAGGATCGTTATGCCCTGAGAAC
TTCACCACAATGGCTCGGCCCTCAGATCGAAGTGATTCGGTTTGCAACCA
AGTCTATTGAACGGGAGATCAACT
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