CF832012

Overview
NameCF832012
Unique NameCF832012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9654 contig Csv1_Contig9654:145..918. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_KLEP7 (Histidine ammonia-lyase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=hutH PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.589e-30
Identity = 83/256 (32.42%), Postives = 135/256 (52.73%), Query Frame = 3
Query:    6 TKTVGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            T+ +  LQ+ L+    AG+          L     R  M++++N+L +G+SGIR  +++A+  L+N  +TP +P +G++ ASGDL PL++++  L G   ++  G  G+ + A EA +Q G     L  KEGLAL+NGT   +  A   LFEA +L   + +  A+  E   G     D   H+++   GQI+AAA+  H+L   S ++ +   H    +Q P    Y+LR  PQ +G  +  IR A + +  E N
Sbjct:   70 TEDLENLQRSLVLSHAAGV-------GEPLDDDLARLIMVLKINSLSRGFSGIRLSVIQALIGLVNAGVTPWIPAKGSVGASGDLAPLAHMSLTLLGEGKARVRG--GDWLPATEALRQVGLEPITLAAKEGLALLNGTQASTAFALRGLFEAEDLFASAVVCGALTTEAALGSRRPFDARIHEVRGQRGQIDAAALYRHLLTDDSAISQSH--HNCSKVQDP----YSLRCQPQVMGACLTQIRQAAEVLLAEAN 310          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_VIBVY (Histidine ammonia-lyase OS=Vibrio vulnificus (strain YJ016) GN=hutH PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.299e-30
Identity = 82/250 (32.80%), Postives = 132/250 (52.80%), Query Frame = 3
Query:   24 LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            LQ+ ++    AGI          +   T R  M++++N+L +GYSGIR  +++ +  L+N  + PC+P +G++ ASGDL PL++++ +L G   ++    NG+II   EA K AG     L PKEGLAL+NGT   +  A   LF A +L   + +  A+  E   G     D   H+++ H  Q+++A    H+LD SS +  +    E        QD Y+LR  PQ +G  ++ IR + + +  E N
Sbjct:   78 LQRSIVLSHAAGI-------GEFMADETVRLMMVLKINSLSRGYSGIRLNVIQMLIDLVNAQVYPCVPQKGSVGASGDLAPLAHMSTVLLGEGQAR---HNGKIISGLEALKIAGLEPITLAPKEGLALLNGTQASTAFALEGLFIAEDLFASATVCGAMSVEAALGSRRPFDPRIHRVRGHRSQMDSAMAYRHLLDTSSEIGQSHSNCE------KVQDPYSLRCQPQVMGACLQQIRNSAEILLVESN 311          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_VIBVU (Histidine ammonia-lyase OS=Vibrio vulnificus GN=hutH PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.299e-30
Identity = 82/250 (32.80%), Postives = 132/250 (52.80%), Query Frame = 3
Query:   24 LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            LQ+ ++    AGI          +   T R  M++++N+L +GYSGIR  +++ +  L+N  + PC+P +G++ ASGDL PL++++ +L G   ++    NG+II   EA K AG     L PKEGLAL+NGT   +  A   LF A +L   + +  A+  E   G     D   H+++ H  Q+++A    H+LD SS +  +    E        QD Y+LR  PQ +G  ++ IR + + +  E N
Sbjct:   78 LQRSIVLSHAAGI-------GEFMADETVRLMMVLKINSLSRGYSGIRLNVIQMLIDLVNAQVYPCVPQKGSVGASGDLAPLAHMSTVLLGEGQAR---HNGKIISGLEALKIAGLEPITLAPKEGLALLNGTQASTAFALEGLFIAEDLFASATVCGAMSVEAALGSRRPFDPRIHRVRGHRSQMDSAMAYRHLLDTSSEIGQSHSNCE------KVQDPYSLRCQPQVMGACLQQIRNSAEILLVESN 311          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_THETN (Histidine ammonia-lyase OS=Thermoanaerobacter tengcongensis GN=hutH PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.299e-30
Identity = 78/251 (31.08%), Postives = 133/251 (52.99%), Query Frame = 3
Query:   21 ALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            ALQK LI   +  +          LP    RA ML+R N L +G+SG+R E +E + +++N N+ P +P +G++ ASGDL PL+++  ++ GR  +      GE +  +EA ++AG     L  KEGLAL+NGT V S L  + +++A  +  +++ +++I  E ++G  +  D     ++ H GQI +A  +  +++GS  +    ++          QD Y LR  PQ  G   + I +  + +  EIN
Sbjct:   75 ALQKNLIMSHSCAV-------GDPLPEEVVRAIMLLRANALAKGFSGVRLETVETLIEMINKNVVPVIPEKGSLGASGDLAPLAHMVLVMIGRGEAFYA---GERVSGEEAMRRAGIPTITLSSKEGLALINGTQVMSALGCLNVYDAKRIIAVADAVASITLEALRGIIDAFDDRVQMVRPHKGQIVSAKNVRKMVEGSELITRQGEIR--------VQDAYTLRCIPQVHGAVRDAISYIERVLGVEIN 307          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_STRP3 (Histidine ammonia-lyase OS=Streptococcus pyogenes serotype M3 GN=hutH PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.533e-30
Identity = 84/250 (33.60%), Postives = 130/250 (52.00%), Query Frame = 3
Query:   24 LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            LQ+ LIR   +G FG+       LP    RA ML+R+N+L++GYSGIR   +E + +LLN  + P +P +G++ ASGDL PL+++   + G   +      GE++  QEA  +AG     L  KEGLAL+NGT V + + ++  ++A  L  LS++  A+  EV  G     +   H ++   GQ+  A  + ++ +GS     A         Q   QD Y LR  PQ  G   + I +    ++ EIN
Sbjct:   77 LQENLIRTHASG-FGD------PLPEDAVRAIMLIRINSLVKGYSGIRLSTIEKLLELLNKGVHPYIPEKGSLGASGDLAPLAHMVLPMLGLGKAYY---KGELLSGQEALDKAGIDKISLAAKEGLALINGTTVLTAIGALATYDAIQLLKLSDLAGALSLEVHNGITSPFEENLHTIRPQSGQLATARNIRNLHEGSQNTTVA--------TQSRVQDPYTLRCIPQIHGASKDSIAYVKSKVDIEIN 308          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_VIBPA (Histidine ammonia-lyase OS=Vibrio parahaemolyticus GN=hutH PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.245e-29
Identity = 75/223 (33.63%), Postives = 123/223 (55.16%), Query Frame = 3
Query:  105 TTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            T R  M++++N+L +G+SGIR +++  +  L+N  + PC+P +G++ ASGDL PL++++ +L G   ++    NG+I+   EA K AG     L PKEGLAL+NGT   +  A   LF A +L   + +  A+  E   G     D   H+++ H   ++AA    H+LD SS +  +    E        QD Y+LR  PQ +G  ++ IR + + ++ E N
Sbjct:   96 TVRLMMVLKINSLARGFSGIRLKVINMLIDLVNAQVYPCVPQKGSVGASGDLAPLAHMSTVLLGEGQAR---HNGQIVSGYEALKIAGLEPITLAPKEGLALLNGTQASTAFALEGLFIAEDLFASATVCGAMSVEAALGSRRPFDPRIHRVRGHRSTMDAAMAYRHLLDTSSEIGESHTNCE------KVQDPYSLRCQPQVMGACLQQIRNSAEVLQVEAN 309          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_PSYIN (Histidine ammonia-lyase OS=Psychromonas ingrahamii (strain 37) GN=hutH PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.245e-29
Identity = 84/250 (33.60%), Postives = 130/250 (52.00%), Query Frame = 3
Query:   24 LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            LQ+ ++    AGI          +   T R  M++++N+L +G+SGIR  ++EA+  L+N  I PC+P +G++ ASGDL PL++++ +L G   ++     G II   +A + AG     L PKEGLAL+NGT          LF A +L   + +  A+  +   G     D   H+++ H  QI++A I  HILD  S V+     H     +K  QD Y+LR  PQ +G  ++ IR +    E E N
Sbjct:   76 LQRSIVLSHAAGI-------GELMNDETVRMMMVLKINSLARGFSGIRLSVIEALMTLVNAQIYPCVPKKGSVGASGDLAPLAHMSTVLLGEGEARY---QGNIISGAKALEIAGMQPITLAPKEGLALLNGTQASCAFGLEGLFAAEDLFASATLCGAMTVDAALGSRRPFDDRVHQVRGHQSQIDSALIYRHILDTHSEVS-----HSHTACEK-VQDPYSLRCQPQVMGACLQQIRNSAAIYEIEAN 309          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_ENT38 (Histidine ammonia-lyase OS=Enterobacter sp. (strain 638) GN=hutH PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.626e-29
Identity = 83/250 (33.20%), Postives = 135/250 (54.00%), Query Frame = 3
Query:   24 LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            LQ+ L+    AG+          L  +  R  M++++N+L +G+SGIR  +++A+  L+N  + P +P +G++ ASGDL PL++++ LL G   ++     GE + A++A K+AG     L  KEGLAL+NGT   +  A   LFEA +L   + +  A+  E + G     D   H ++   GQI+AAA+  H+L  +S +  A   H  D +Q P    Y+LR  PQ +G  +  +R A + +  E N
Sbjct:   76 LQRSLVLSHAAGV-------GAPLDDNMVRLMMVLKINSLARGFSGIRLSVIQALIALVNAQVYPWIPSKGSVGASGDLAPLAHMSLLLLGEGKARW---QGEWLPAKDALKKAGLEPITLAAKEGLALLNGTQASTAFALRGLFEAEDLFASAVVCGALTTEAVLGSRSPFDARIHAVRGQRGQIDAAAMYRHVLTDTSEI--ADSHHNCDKVQDP----YSLRCQPQVMGACLTQLRHAAEVLLVESN 309          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_PHOLL (Histidine ammonia-lyase OS=Photorhabdus luminescens subsp. laumondii GN=hutH PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.124e-29
Identity = 85/251 (33.86%), Postives = 135/251 (53.78%), Query Frame = 3
Query:   24 LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPK-QDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            LQ+ L+    AG+          L  + TR  M++++N+L +GYSGIR  +++A+  L+N  I P +P +G++ ASGDL PL++++ LL G   ++     GE + A+EA  +A      L  KEGLAL+NGT V +  A   LFEA +L   + +  ++  E   G  +  D   H ++   GQI+ AA+  H+L+ SS ++ +        +  PK QD Y+LR  PQ +G  +  +R A   I  E N
Sbjct:   76 LQRSLVVSHAAGV-------GKALDDNMTRLIMVLKINSLSRGYSGIRLAVIQALIALVNAEIYPHIPCKGSVGASGDLAPLAHMSLLLLGEGQARY---QGEWLPAKEALAKANLQPITLAAKEGLALLNGTQVSTAFALRGLFEAEDLLAAAIVCGSLSVEAALGSRKPFDARVHVVRGQQGQIDVAALYRHVLEESSELSDSH-------INCPKVQDPYSLRCQPQVMGACLTQLRHAADVILTEAN 309          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_SHEPW (Histidine ammonia-lyase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=hutH PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.774e-29
Identity = 79/239 (33.05%), Postives = 124/239 (51.88%), Query Frame = 3
Query:   60 IFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPK-QDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            +  +   +   +  +T R  M++++N+L +G+SGIR E++  +  L+N  + PC+P +G++ ASGDL PLS++   L            G++I A E  + AG    EL  KEGLAL+NGT   + LA   LF A +L   S ++ A+  E   G     D   H  +   GQI++AA+  H+L   S ++       +D +   K QD Y+LR  PQ LG  +  IR A + +  E N
Sbjct:   81 VLSHAAGTGQYMQDATVRLMMVLKINSLSRGFSGIRLEVINFLIALVNAEVYPCVPEKGSVGASGDLAPLSHMCLPLLAEGEMSY---KGQLITAAEGLEIAGLKPLELAAKEGLALLNGTQASTALALEGLFNAEDLFAASSVIGAMSVEAAMGSRSPFDSRIHAARGQKGQIDSAAVFRHLLGDESEIS-------LDHVNCEKVQDPYSLRCQPQVLGACLTQIRHAAEVLGTEAN 309          
The following BLAST results are available for this feature:
BLAST of CF832012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251
Match NameE-valueIdentityDescription
HUTH_KLEP75.589e-3032.42Histidine ammonia-lyase OS=Klebsiella pneumoniae s... [more]
HUTH_VIBVY7.299e-3032.80Histidine ammonia-lyase OS=Vibrio vulnificus (stra... [more]
HUTH_VIBVU7.299e-3032.80Histidine ammonia-lyase OS=Vibrio vulnificus GN=hu... [more]
HUTH_THETN7.299e-3031.08Histidine ammonia-lyase OS=Thermoanaerobacter teng... [more]
HUTH_STRP39.533e-3033.60Histidine ammonia-lyase OS=Streptococcus pyogenes ... [more]
HUTH_VIBPA1.245e-2933.63Histidine ammonia-lyase OS=Vibrio parahaemolyticus... [more]
HUTH_PSYIN1.245e-2933.60Histidine ammonia-lyase OS=Psychromonas ingrahamii... [more]
HUTH_ENT381.626e-2933.20Histidine ammonia-lyase OS=Enterobacter sp. (strai... [more]
HUTH_PHOLL2.124e-2933.86Histidine ammonia-lyase OS=Photorhabdus luminescen... [more]
HUTH_SHEPW2.774e-2933.05Histidine ammonia-lyase OS=Shewanella piezotoleran... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C18_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832012 ID=CF832012; Name=CF832012; organism=Citrus sinensis; type=EST; length=774bp
GGAGAACCAAGACCGTCGGTGCTCTTCAGAAGGAGCTCATTAGATTTTTG
AACGCTGGAATCTTTGGAAACGGAACAGAGTCATCTCACACGCTACCTCA
CTCAACAACAAGGGCAGCCATGCTTGTGAGGGTTAACACTCTTCTCCAGG
GCTACTCTGGCATCCGATTTGAAATCCTGGAAGCGATCACAAAGCTGCTC
AATCACAACATCACTCCATGCCTCCCTCTTCGCGGCACAATCACTGCTTC
AGGGGATCTGGTTCCTCTTTCCTACATTGCCGGACTGCTCACCGGCCGGC
CCAATTCTAAGGCCACCGGGCCTAATGGAGAGATCATTGATGCCCAGGAA
GCCTCTAAACAAGCGGGTTTCGGGTTCTTTGAGTTGCAGCCTAAGGAGGG
TCTTGCTCTTGTCAATGGCACTGCTGTTGGTTCTGGCCTGGCTTCTATGG
TTCTGTTTGAGGCTAACAACCTTGCTCTGTTATCAGAAATTTTGTCAGCT
ATTTTTGCTGAAGTCATGCAAGGCAAACCTGAGTTCACTGATCACTTGAC
ACACAAATTGAAGCACCATCCTGGCCAAATTGAGGCTGCTGCTATAATGG
AACATATCCTCGATGGCAGCTCTTATGTTAACGCGGCTAAGAAGTTGCAT
GAGATTGATCCTCTGCAGAAGCCGAAACAGGATCGTTATGCCCTGAGAAC
TTCACCACAATGGCTCGGCCCTCAGATCGAAGTGATTCGGTTTGCAACCA
AGTCTATTGAACGGGAGATCAACT
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