CF832024
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: SN114_SCHPO (114 kDa U5 small nuclear ribonucleoprotein component homolog OS=Schizosaccharomyces pombe GN=cwf10 PE=1 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 9.057e-40 Identity = 82/179 (45.81%), Postives = 115/179 (64.25%), Query Frame = -1 Query: 345 LAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQ------------AAQLVADIRKRKGLKEQMTPLSEFEDKL 845 L +E +R + F + DVVL + I+RGGGQ+IPTARRV Y+S LTA PRL+EPVYMVE+ AP +L IY +L ++RGHV +++ RPG+PLY ++A +PVI+S GF LR T GQA Q VFDHW ++ DPL+ + A + R+RKGL E ++ F+ ++ Sbjct: 792 LCDETIRNVNFRLMDVVLAPEQIYRGGGQIIPTARRVCYSSFLTASPRLMEPVYMVEVHAPADSLPIIYDLLTRRRGHVLQDIPRPGSPLYLVRALIPVIDSCGFETDLRVHTQGQAMCQMVFDHWQVVPGDPLDKSIKPKPLEPARGSDLARDFLIKTRRRKGLVEDVSTTRYFDQEM 970
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: U5S1_CHICK (116 kDa U5 small nuclear ribonucleoprotein component OS=Gallus gallus GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 1.708e-38 Identity = 77/179 (43.02%), Postives = 112/179 (62.57%), Query Frame = -1 Query: 345 LAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGT------------QAAQLVADIRKRKGLKEQMTPLSEFEDKL 845 L +E +R + F++ D V+ + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP + +Y+VL ++RGHV ++ PG+PLY IKA++P I+SFGF LR T GQAF VF HW ++ DPL+ A + + R+RKGL E ++ F+D + Sbjct: 779 LCDELIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 957
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: U5S1_PONAB (116 kDa U5 small nuclear ribonucleoprotein component OS=Pongo abelii GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 2.231e-38 Identity = 77/179 (43.02%), Postives = 112/179 (62.57%), Query Frame = -1 Query: 345 LAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGT------------QAAQLVADIRKRKGLKEQMTPLSEFEDKL 845 L +E +R + F++ D V+ + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP + +Y+VL ++RGHV ++ PG+PLY IKA++P I+SFGF LR T GQAF VF HW ++ DPL+ A + + R+RKGL E ++ F+D + Sbjct: 779 LCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 957
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: U5S1_MOUSE (116 kDa U5 small nuclear ribonucleoprotein component OS=Mus musculus GN=Eftud2 PE=2 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 2.231e-38 Identity = 77/179 (43.02%), Postives = 112/179 (62.57%), Query Frame = -1 Query: 345 LAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGT------------QAAQLVADIRKRKGLKEQMTPLSEFEDKL 845 L +E +R + F++ D V+ + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP + +Y+VL ++RGHV ++ PG+PLY IKA++P I+SFGF LR T GQAF VF HW ++ DPL+ A + + R+RKGL E ++ F+D + Sbjct: 778 LCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 956
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: U5S1_HUMAN (116 kDa U5 small nuclear ribonucleoprotein component OS=Homo sapiens GN=EFTUD2 PE=1 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 2.231e-38 Identity = 77/179 (43.02%), Postives = 112/179 (62.57%), Query Frame = -1 Query: 345 LAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGT------------QAAQLVADIRKRKGLKEQMTPLSEFEDKL 845 L +E +R + F++ D V+ + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP + +Y+VL ++RGHV ++ PG+PLY IKA++P I+SFGF LR T GQAF VF HW ++ DPL+ A + + R+RKGL E ++ F+D + Sbjct: 779 LCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 957
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: U5S1_BOVIN (116 kDa U5 small nuclear ribonucleoprotein component OS=Bos taurus GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 2.231e-38 Identity = 77/179 (43.02%), Postives = 112/179 (62.57%), Query Frame = -1 Query: 345 LAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGT------------QAAQLVADIRKRKGLKEQMTPLSEFEDKL 845 L +E +R + F++ D V+ + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP + +Y+VL ++RGHV ++ PG+PLY IKA++P I+SFGF LR T GQAF VF HW ++ DPL+ A + + R+RKGL E ++ F+D + Sbjct: 779 LCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 957
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: EF2_THENV (Elongation factor 2 OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=fusA PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.188e-23 Identity = 60/163 (36.81%), Postives = 96/163 (58.90%), Query Frame = -1 Query: 357 LAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 845 LA+E MRG+ + D V+H D HRG Q++P + I+A+ L+A+P +LEP+ ++I+ +G + SVLN+ RG + + Q+ + ++A LPV+ESF S LRAA +G+ F F W M P + A +V +RK+KGLKE++ ++F Sbjct: 582 LAQEPMRGLKVVLTDAVVHEDPAHRGPAQIMPATKNAIFAAVLSARPTILEPLMKLDIKVAPDYIGAVTSVLNKHRGKILDMTQQ--EYMAYLRAELPVLESFTISDELRAAAAGKIFWSMQFSRWAPM------PESILADMVKQLRKKKGLKEEIPKPTDF 736
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: EF2_STAMF (Elongation factor 2 OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=fusA PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.648e-23 Identity = 61/156 (39.10%), Postives = 90/156 (57.69%), Query Frame = -1 Query: 378 LAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQ 845 LA E +RG+ + D ++H D HRG GQ+ P R IYA LTAKP LLEP+ ++I+AP + LG I +++ +KRG + + +Q+ + I A +PV E+F + LR AT+G+A F W + P + LV IR+RKGLK + Sbjct: 579 LAMEPVRGVKVILHDAIIHEDPAHRGPGQIYPAVRNAIYAGMLTAKPTLLEPIQKLDIKAPMEYLGNITTIITKKRGKILQVLQQGA--VARIIAEIPVAETFDLAEQLRGATAGKAIWGQEFSRWAPV------PDSMLLDLVRKIRERKGLKPE 726
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: EF2_PYRIL (Elongation factor 2 OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=fusA PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.648e-23 Identity = 59/163 (36.20%), Postives = 95/163 (58.28%), Query Frame = -1 Query: 357 LAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 845 LA+E +RG+ + D V+H D HRG Q++P + I+A+ L+AKP +LEP+ ++I+ +G + SVLN+ RG + + Q+ + ++A LPV+ESF S LRAA +G+ F F W + P + LV +RK+KGLKE++ ++F Sbjct: 582 LAQEPIRGVKVVLVDAVVHEDPAHRGPAQIMPATKNAIFAAMLSAKPTVLEPLLRLDIKVAPDYIGAVTSVLNKHRGKILDMTQQ--EYMAYLRAELPVLESFTISDELRAAAAGKIFWSMQFSRWAPV------PESMLLDLVKQLRKKKGLKEEIPKPTDF 736
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: EF2_PYRAE (Elongation factor 2 OS=Pyrobaculum aerophilum GN=fusA PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 4.516e-23 Identity = 59/163 (36.20%), Postives = 92/163 (56.44%), Query Frame = -1 Query: 357 LAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 845 LA+E MRG+ + D V+H D HRG Q++P + I+A+ L+A+P LLEP+ ++I+ +G + SVLN+ RG + + Q+ ++A LPV+ESF S LRAA +G+ F F W P + V +RK+KGLKE++ ++F Sbjct: 582 LAQEPMRGVKVVLVDAVVHEDPAHRGPAQIMPATKNAIFAAVLSARPTLLEPLMRLDIKVAPDYIGAVTSVLNKHRGKILDMTQQEYMAF--LRAELPVLESFNISDELRAAAAGKIFWSMQFARWAPF------PESMLGDFVKQLRKKKGLKEEIPKPTDF 736 The following BLAST results are available for this feature:
BLAST of CF832024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 100
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832024 ID=CF832024; Name=CF832024; organism=Citrus sinensis; type=EST; length=848bpback to top |