CF832025

Overview
NameCF832025
Unique NameCF832025
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length662
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832025 vs. ExPASy Swiss-Prot
Match: EFG2_BORPA (Elongation factor G 2 OS=Bordetella parapertussis GN=fusA2 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.836e-11
Identity = 48/131 (36.64%), Postives = 73/131 (55.73%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETV 409
            ++  + +V  G+  A VG+ + IT   TLT+   V    +  M F   PV+  AV+ +  +D  K+   L RLA+ DP   V T EESG+ I++G GELHLEI +  ++ +F  G E     P V++RET+
Sbjct:  366 ERREISEVYAGDIAAAVGIKE-ITTGDTLTDPAHVII--LERMTFP-EPVISQAVEPRTKADQEKMGIALNRLAQEDPSFRVRTDEESGQTIISGMGELHLEILVDRMKREF--GVEANVGKPQVAYRETI 490          
BLAST of CF832025 vs. ExPASy Swiss-Prot
Match: EFG2_BORBR (Elongation factor G 2 OS=Bordetella bronchiseptica GN=fusA2 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.836e-11
Identity = 48/131 (36.64%), Postives = 73/131 (55.73%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETV 409
            ++  + +V  G+  A VG+ + IT   TLT+   V    +  M F   PV+  AV+ +  +D  K+   L RLA+ DP   V T EESG+ I++G GELHLEI +  ++ +F  G E     P V++RET+
Sbjct:  368 ERREISEVYAGDIAAAVGIKE-ITTGDTLTDPAHVII--LERMTFP-EPVISQAVEPRTKADQEKMGIALNRLAQEDPSFRVRTDEESGQTIISGMGELHLEILVDRMKREF--GVEANVGKPQVAYRETI 492          
BLAST of CF832025 vs. ExPASy Swiss-Prot
Match: EFG1_RALME (Elongation factor G 1 OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=fusA1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.836e-11
Identity = 52/137 (37.96%), Postives = 76/137 (55.47%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPI--RAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKS 421
            ++E +++V  G+  A VGL     K+AT  +     A PI    M F   PV+  AV+ K  +D  K+   L RLA  DP   V T EESG+ I++G GELHLEI +  ++ +F  G E     P V++RET+ +K+
Sbjct:  370 QREEIKEVLAGDIAAAVGL-----KDATTGDTLCDPAAPIVLERMVFP-EPVISQAVEPKTKADQEKMGIALNRLAAEDPSFRVRTDEESGQTIISGMGELHLEILVDRMKREF--GVEANIGAPQVAYRETIRKKA 498          
BLAST of CF832025 vs. ExPASy Swiss-Prot
Match: EFG1_HAHCH (Elongation factor G 1 OS=Hahella chejuensis (strain KCTC 2396) GN=fusA1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.836e-11
Identity = 60/193 (31.09%), Postives = 99/193 (51.30%), Query Frame = 2
Query:   23 QETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLE------KSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDD--GRIGPRDDPKARSKILSEE 574
            +E +++V  G+  AM+GL   +T   TL +   +    +  M+F   PV+ VAV+ K  +D  K+   L +LA+ DP   V T EE+G+ I++G GELHL+I +  ++ +F   A I K  P V++RE +        K  R    +    H  +  E R   EGL E +++  G + P++   A  K + E+
Sbjct:  370 REEIKEVRAGDIAAMIGLKD-VTTGDTLCDPNNIIT--LERMEFP-DPVISVAVEPKSKADQEKMGIALGKLAQEDPSFRVKTDEETGQTIISGMGELHLDIIVDRMRREFKVEANIGK--PQVAYREAIRNTCEIEGKFVRQSGGRGQYGHVWIKFEPRAEGEGL-EFVNEIVGGVVPKEYVPAIQKGIEEQ 555          
The following BLAST results are available for this feature:
BLAST of CF832025 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 424
Match NameE-valueIdentityDescription
EFG2_BORPA9.836e-1136.64Elongation factor G 2 OS=Bordetella parapertussis ... [more]
EFG2_BORBR9.836e-1136.64Elongation factor G 2 OS=Bordetella bronchiseptica... [more]
EFG1_RALME9.836e-1137.96Elongation factor G 1 OS=Ralstonia metallidurans (... [more]
EFG1_HAHCH9.836e-1131.09Elongation factor G 1 OS=Hahella chejuensis (strai... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01D01_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832025 ID=CF832025; Name=CF832025; organism=Citrus sinensis; type=EST; length=662bp
ACGTATTTGGATGGGAAAGAAGCAGGAAACCGTTGAGGATGTGCCTTGTG
GTAACACTGTGGCTATGGTTGGTCTCGATCAATTCATCACTAAAAATGCT
ACCTTGACTAATGAGAAGGAAGTTGATGCCCATCCCATCCGTGCTATGAA
GTTCTCTGTCTCACCTGTTGTTCGTGTGGCTGTCCAGTGCAAAGTCGCTT
CTGATCTCCCTAAGCTTGTTGAAGGTCTTAAGCGTTTGGCCAAGTCAGAT
CCTATGGTTGTCTGTACAATTGAGGAGTCTGGCGAGCACATTGTTGCTGG
TGCGGGAGAACTTCACCTTGAGATCTGTTTGAAGGATCTGCAGGACGATT
TCATGGGAGGTGCTGAAATTATTAAATCTGATCCTGTTGTGTCCTTCCGT
GAAACTGTCCTTGAGAAGTCTTGCCGCACTGTGATGAGTAAGTCTCCCAA
CAAGCATAATCGTCTCTACATGGAAGCCCGACCTCTGGAAGAAGGTCTTG
CTGAGGCCATAGATGATGGCCGCATTGGTCCAAGGGATGATCCCAAGGCT
CGATCTAAGATCTTGTCTGAGGAGTTCGGCTGGGACAAGGATCTTGCGAA
GAAGATTTGGTGTTTTGGTCCTGAGACCACTGGCCCTAACATGGTCGTTG
ATATGTGTAAGG
back to top