CF832025

Overview
NameCF832025
Unique NameCF832025
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length662
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832025 vs. ExPASy Swiss-Prot
Match: EF2_METVS (Elongation factor 2 OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=fusA PE=3 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.670e-26
Identity = 75/225 (33.33%), Postives = 127/225 (56.44%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPK-----ARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCK 661
            I+MG ++  V  +  GN  A+ GL +  T   T+ +  ++      ++  +  PV+ VA++ K   DLPKL+E L+++ + D  V   I EE+GEH+++G GELH+E+ + + +    GG E+   +P++ +RET+   S   +  KSPNKHN+LYM A P+EE +  A  +G+I   D  K     A ++++  E G +++ AKK+          NM+V+M K
Sbjct:  340 IFMGAERVQVPSISAGNICALTGLRE-ATAGETVCSPSKILEPGFESLTHTSEPVITVAIEAKNTKDLPKLIEILRQIGREDNTVRIEINEETGEHLISGMGELHIEV-ITNTKIGRDGGIEVDVGEPIIVYRETITGTSPE-IEGKSPNKHNKLYMIAEPMEESVYAAYVEGKIHDEDFKKKTNVDAETRLI--EAGLEREQAKKVM----SIYNGNMIVNMTK 555          
BLAST of CF832025 vs. ExPASy Swiss-Prot
Match: EF2_HALSA (Elongation factor 2 OS=Halobacterium salinarium GN=fusA PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 5.372e-25
Identity = 69/220 (31.36%), Postives = 123/220 (55.91%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCK 661
            I+MG ++E V++VP GN  A+ GL   I   +T++NE+     P  ++     PV+  +++ +   DLPKL+E L++++K DP +   I E++GEH+++G GELHLE+  + ++ +   G  +   +P+V +RET    S + V   SPN+HN+ Y+    L + + E I  G +   D P+   + + +E G DK+ ++ +        G N+ +D  K
Sbjct:  341 IYMGGEREEVDEVPAGNIAAVTGLKDAIA-GSTVSNEEMT---PFESIDHISEPVITKSIEAQNMDDLPKLIETLRQVSKEDPTISIEINEDTGEHLISGQGELHLEVQTQRIERN--QGIPVTTGEPIVVYRETPTSDS-QEVEGVSPNRHNKFYITVEQLSDDVLEEIRLGEVS-MDMPEQERREVLQEAGMDKETSQDV----ENIIGRNIFIDDTK 548          
BLAST of CF832025 vs. ExPASy Swiss-Prot
Match: EF2_HALS3 (Elongation factor 2 OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=fusA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.372e-25
Identity = 69/220 (31.36%), Postives = 123/220 (55.91%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCK 661
            I+MG ++E V++VP GN  A+ GL   I   +T++NE+     P  ++     PV+  +++ +   DLPKL+E L++++K DP +   I E++GEH+++G GELHLE+  + ++ +   G  +   +P+V +RET    S + V   SPN+HN+ Y+    L + + E I  G +   D P+   + + +E G DK+ ++ +        G N+ +D  K
Sbjct:  341 IYMGGEREEVDEVPAGNIAAVTGLKDAIA-GSTVSNEEMT---PFESIDHISEPVITKSIEAQNMDDLPKLIETLRQVSKEDPTISIEINEDTGEHLISGQGELHLEVQTQRIERN--QGIPVTTGEPIVVYRETPTSDS-QEVEGVSPNRHNKFYITVEQLSDDVLEEIRLGEVS-MDMPEQERREVLQEAGMDKETSQDV----ENIIGRNIFIDDTK 548          
BLAST of CF832025 vs. ExPASy Swiss-Prot
Match: ETUD1_MOUSE (Elongation factor Tu GTP-binding domain-containing protein 1 OS=Mus musculus GN=Eftud1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.164e-25
Identity = 82/274 (29.93%), Postives = 128/274 (46.72%), Query Frame = 2
Query:   11 MGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLE------------------------------------KSCRTVMSKSPNKHNRLYMEARPLEEG-----------------LAEAIDDGRIGPRDDPKARSKILSEEFGWDKDL--------AKKIWCFGPETTGPNMVV 649
            MG++ E +E+VP GN + + GL  F+ K+ATL +       P   + F  +P+VRVAV+ K  S++P+LV+G+K L ++DP V   I+E+GEH++  AGE+HL+ CL DL++ F     I  S+P++ FRET+ +                                     S   +   +PNK   L + A PL E                  L  ++++GR       K + KI   +   +K L          +IW FGP   GPN++V
Sbjct:  567 MGRELEDLEEVPPGNVLGIGGLQDFVLKSATLCSLPSCP--PFIPLNFEATPIVRVAVEPKHPSEMPQLVKGMKLLNQADPCVQVLIQETGEHVLVTAGEVHLQRCLDDLRERF-AKIHISVSEPIIPFRETITKPPKVDMVNEEIGRQQKVAVIHQTKEEQSKIPEGIHVDSDGLITIPTPNKLATLSVRAIPLPEEVTRILEENSDLIRSMELLTSSLNEGRNTQAIHQKTQEKIWEFKGKLEKHLTGRKWRNTVDQIWSFGPRKCGPNILV 837          
BLAST of CF832025 vs. ExPASy Swiss-Prot
Match: ETUD1_HUMAN (Elongation factor Tu GTP-binding domain-containing protein 1 OS=Homo sapiens GN=EFTUD1 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.197e-24
Identity = 78/275 (28.36%), Postives = 131/275 (47.64%), Query Frame = 2
Query:   11 MGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLE------------------------------------KSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKI-----------LSEEFGWD--------------KDLAKKIWCFGPETTGPNMVVD 652
            MG++ E +E+VP GN + + GL  F+ K+ATL +       P   + F  +P+VRVAV+ K  S++P+LV+G+K L ++DP V   I+E+GEH++  AGE+HL+ CL DL++ F     I  S+P++ FRET+ +                                     S   +   +PNK   L + A PL E + + +++     R   +  S +            ++E  W+              +++  +IW FGP   GPN++V+
Sbjct:  567 MGRELEYLEEVPPGNVLGIGGLQDFVLKSATLCSLPSCP--PFIPLNFEATPIVRVAVEPKHPSEMPQLVKGMKLLNQADPCVQILIQETGEHVLVTAGEVHLQRCLDDLKERF-AKIHISVSEPIIPFRETITKPPKVDMVNEEIGKQQKVAVIHQMKEDQSKIPEGIQVDSDGLITITTPNKLATLSVRAMPLPEEVTQILEENSDLIRSMEQLTSSLNEGENTHMIHQKTQEKIWEFKGKLEQHLTGRRWRNIVDQIWSFGPRKCGPNILVN 838          
BLAST of CF832025 vs. ExPASy Swiss-Prot
Match: EF2_META3 (Elongation factor 2 OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=fusA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.028e-23
Identity = 70/205 (34.15%), Postives = 112/205 (54.63%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSE---EFGWDKDLAKKI 607
            ++MG ++  V  V  GN  A+ GL +  +   T+ +   +      ++     PV+ VA++ K   DLPKL++ L+++AK D  V   I EE+GEH+++G GELH+E+ + + +     G E+   +P+V +RE V   S   V  KSPNKHNRLY  A PL+E +  A  +G I   D  K   K +     E G +++ AK++
Sbjct:  340 VFMGAERVQVPSVSAGNICALTGLKE-ASAGETVCSPNTILDPSFESITHVSEPVITVAIEAKNTKDLPKLIDVLRQIAKEDNTVRVEINEETGEHLISGMGELHIEV-ITNTKIGRDAGVEVDVGEPIVVYREAVNGVSPE-VEGKSPNKHNRLYFVAEPLDECVYNAHVEGLIKDEDFKKKTPKEVETKLVEIGMNREEAKRV 541          
BLAST of CF832025 vs. ExPASy Swiss-Prot
Match: RIA1_YEAST (Ribosome assembly protein 1 OS=Saccharomyces cerevisiae GN=RIA1 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.239e-21
Identity = 60/139 (43.17%), Postives = 84/139 (60.43%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKS 421
            ++MGK+   ++  P GN V + GL   + K+ TL  EK V    +  + F  +P+VRVAV+     ++ KLV GLK L ++DP V   +E +GEHI+  AGELHLE CLKDL + F  G EI  S+P + +RET L  S
Sbjct:  625 LFMGKELVPLDVCPSGNIVGIRGLAGKVLKSGTLI-EKGVQGVNLAGVNFHFTPIVRVAVEPANPVEMSKLVRGLKLLDQADPCVHTYVENTGEHILCTAGELHLERCLKDLTERF-AGIEITHSEPAIPYRETFLSAS 761          
BLAST of CF832025 vs. ExPASy Swiss-Prot
Match: RIA1_SCHPO (Ribosome assembly protein 1 OS=Schizosaccharomyces pombe GN=ria1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.583e-19
Identity = 79/267 (29.59%), Postives = 121/267 (45.32%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETV-------------------------------------------LEKSCRTVMSKSPN--KHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEE---FGWDKDLAKKIWCFGPETTGPNMVVDMCK 661
            + MG++   +E VP GN  A+ GL   + + ATL +    +   +  +   + P+VRVA++     ++ KLV GL  L ++DP V   +EE+GEH++  AGE+HLE CLKDL++ F    EI  S P+V +RET                                            L K  +T+ + S N  K NR  + +  L + + E +      P    +  SK+L EE    G  K+    I  FGP+  GPN++ D  K
Sbjct:  511 LMMGQELVYLETVPAGNVFAIGGLAGTVLRTATLCSSP--NGPNLVGVTQQMEPIVRVALEPVRPFEMNKLVTGLDMLNQADPCVQIAVEENGEHVIMCAGEIHLERCLKDLRERF-AKIEIQASQPLVPYRETTIATPDLLAKNKELSIGFVTATLPVGGVTIGITVTPLSGSVVDFLLKHSKTIENVSSNFSKKNRNVVVSESLTKSMEEVLT-----PEKFYERLSKLLEEENSDLGELKNHLDSIIAFGPKRVGPNILFDKTK 769          
BLAST of CF832025 vs. ExPASy Swiss-Prot
Match: EF2_NANEQ (Elongation factor 2 OS=Nanoarchaeum equitans GN=fusA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.417e-17
Identity = 56/169 (33.14%), Postives = 94/169 (55.62%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKE---VDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGL 499
            ++ G ++  +E+   GN +A+ G+    +    +  E +    +  P  A+K    PVV  A++ K   DLPKL+E LK + K DP +   I +ESG+ +++G G+LHLEI    +++DF    +II S+P+V +RE+V +     V  KSPNK N+ Y+    + + L
Sbjct:  346 VFKGIQKIQIEEAKAGNIIAISGVRDLQSGETIVEPEPDGSKPNIPPFEAIKHIFDPVVTKAIEPKDPRDLPKLIEVLKLIQKEDPTLKVEIDQESGQILISGLGDLHLEIVEYRIKNDFK--VDIITSNPIVVYRESV-KGQAGPVEGKSPNKLNKFYITVEKMPDEL 511          
BLAST of CF832025 vs. ExPASy Swiss-Prot
Match: SN114_YEAST (114 kDa U5 small nuclear ribonucleoprotein component OS=Saccharomyces cerevisiae GN=SNU114 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.185e-17
Identity = 60/223 (26.91%), Postives = 111/223 (49.78%), Query Frame = 2
Query:   14 GKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEK-EVDAHPIRAMK---FSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTV-MSKSPNKHNR-------LYMEARPLEEGLAEAIDDGRIGP----------RDDPKARSKILSEEFGWDKDLAKKIWCF 616
            G+    V +   G  V + G+     K+ATL + K + D   ++  K   +    V ++ +Q  +  +LPKL++ L +++K  P V+  +EESGEH++ G GEL+++  L DL+  +    EI  SDP+  F E+   +S  ++ +S S ++          + + A P++  + + +    +G            D+P+  SKIL  E+GWD   ++ +W F
Sbjct:  547 GRYVYPVHEAHKGQIVLIKGISSAYIKSATLYSVKSKEDMKQLKFFKPLDYITEAVFKIVLQPLLPRELPKLLDALNKISKYYPGVIIKVEESGEHVILGNGELYMDCLLYDLRASY-AKIEIKISDPLTVFSESCSNESFASIPVSNSISRLGEENLPGLSISVAAEPMDSKMIQDLSRNTLGKGQNCLDIDGIMDNPRKLSKILRTEYGWDSLASRNVWSF 768          
The following BLAST results are available for this feature:
BLAST of CF832025 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 424
Match NameE-valueIdentityDescription
EF2_METVS1.670e-2633.33Elongation factor 2 OS=Methanococcus vannielii (st... [more]
EF2_HALSA5.372e-2531.36Elongation factor 2 OS=Halobacterium salinarium GN... [more]
EF2_HALS35.372e-2531.36Elongation factor 2 OS=Halobacterium salinarum (st... [more]
ETUD1_MOUSE9.164e-2529.93Elongation factor Tu GTP-binding domain-containing... [more]
ETUD1_HUMAN1.197e-2428.36Elongation factor Tu GTP-binding domain-containing... [more]
EF2_META35.028e-2334.15Elongation factor 2 OS=Methanococcus aeolicus (str... [more]
RIA1_YEAST1.239e-2143.17Ribosome assembly protein 1 OS=Saccharomyces cerev... [more]
RIA1_SCHPO2.583e-1929.59Ribosome assembly protein 1 OS=Schizosaccharomyces... [more]
EF2_NANEQ2.417e-1733.14Elongation factor 2 OS=Nanoarchaeum equitans GN=fu... [more]
SN114_YEAST9.185e-1726.91114 kDa U5 small nuclear ribonucleoprotein compone... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01D01_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832025 ID=CF832025; Name=CF832025; organism=Citrus sinensis; type=EST; length=662bp
ACGTATTTGGATGGGAAAGAAGCAGGAAACCGTTGAGGATGTGCCTTGTG
GTAACACTGTGGCTATGGTTGGTCTCGATCAATTCATCACTAAAAATGCT
ACCTTGACTAATGAGAAGGAAGTTGATGCCCATCCCATCCGTGCTATGAA
GTTCTCTGTCTCACCTGTTGTTCGTGTGGCTGTCCAGTGCAAAGTCGCTT
CTGATCTCCCTAAGCTTGTTGAAGGTCTTAAGCGTTTGGCCAAGTCAGAT
CCTATGGTTGTCTGTACAATTGAGGAGTCTGGCGAGCACATTGTTGCTGG
TGCGGGAGAACTTCACCTTGAGATCTGTTTGAAGGATCTGCAGGACGATT
TCATGGGAGGTGCTGAAATTATTAAATCTGATCCTGTTGTGTCCTTCCGT
GAAACTGTCCTTGAGAAGTCTTGCCGCACTGTGATGAGTAAGTCTCCCAA
CAAGCATAATCGTCTCTACATGGAAGCCCGACCTCTGGAAGAAGGTCTTG
CTGAGGCCATAGATGATGGCCGCATTGGTCCAAGGGATGATCCCAAGGCT
CGATCTAAGATCTTGTCTGAGGAGTTCGGCTGGGACAAGGATCTTGCGAA
GAAGATTTGGTGTTTTGGTCCTGAGACCACTGGCCCTAACATGGTCGTTG
ATATGTGTAAGG
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