CF832058

Overview
NameCF832058
Unique NameCF832058
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832058 vs. ExPASy Swiss-Prot
Match: RL32_DROMD (60S ribosomal protein L32 OS=Drosophila madeirensis GN=RpL32 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.503e-40
Identity = 81/130 (62.31%), Postives = 94/130 (72.31%), Query Frame = 1
Query:   40 PLLTTKIVXXXXXXXXXPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 429
            P    KI+          QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVERA QL + +TN   RLRSQE E
Sbjct:    5 PAYRPKIIKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRIYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134          
BLAST of CF832058 vs. ExPASy Swiss-Prot
Match: RL32_DROGU (60S ribosomal protein L32 OS=Drosophila guanche GN=RpL32 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.503e-40
Identity = 81/130 (62.31%), Postives = 94/130 (72.31%), Query Frame = 1
Query:   40 PLLTTKIVXXXXXXXXXPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 429
            P    KI+          QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVERA QL + +TN   RLRSQE E
Sbjct:    5 PAYRPKIIKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRIYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134          
BLAST of CF832058 vs. ExPASy Swiss-Prot
Match: RL32_DROBF (60S ribosomal protein L32 OS=Drosophila bifasciata GN=RpL32 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.503e-40
Identity = 81/130 (62.31%), Postives = 94/130 (72.31%), Query Frame = 1
Query:   40 PLLTTKIVXXXXXXXXXPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 429
            P    KI+          QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVERA QL + +TN   RLRSQE E
Sbjct:    5 PAYRPKIIKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRIYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134          
BLAST of CF832058 vs. ExPASy Swiss-Prot
Match: RL32_APIME (60S ribosomal protein L32 OS=Apis mellifera GN=RpL32 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.919e-39
Identity = 82/130 (63.08%), Postives = 94/130 (72.31%), Query Frame = 1
Query:   40 PLLTTKIVXXXXXXXXXPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 429
            P+    IV          QSDR   +K NWR+PKGID+RVRR+FKG  LMPNIGYGS+KKTRH LP GF+K +VHNV ELE+LMM NR +CAEIAH  S+KKRK IVERA QL + VT   ARLRSQE E
Sbjct:    5 PVYRPTIVKKRTKKFIRHQSDRYSKLKRNWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPTGFRKVLVHNVKELEVLMMQNRKFCAEIAHGGSSKKRKSIVERAQQLSIRVTYASARLRSQENE 134          
BLAST of CF832058 vs. ExPASy Swiss-Prot
Match: RL32P_MOUSE (Putative 60S ribosomal protein L32' OS=Mus musculus GN=Rpl32-ps PE=5 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.226e-37
Identity = 77/130 (59.23%), Postives = 98/130 (75.38%), Query Frame = 1
Query:   40 PLLTTKIVXXXXXXXXXPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 429
            PL+  KIV          QSDR + +K NWR+P+GID+RVRR+FKG +LMPNIGY S+KKT+H L +GF+KF+VHN+ E E+L+M N++Y AEIAHNVS+K RK IVERAAQL + VTN   RL S+E E
Sbjct:    6 PLVKPKIVKKRTKKFIRHQSDRYVKIKWNWRKPRGIDNRVRRRFKGQILMPNIGYRSNKKTKHTLSSGFRKFLVHNIKEPEVLLMCNKSYRAEIAHNVSSKNRKAIVERAAQLAIRVTNPNTRLHSEENE 135          
BLAST of CF832058 vs. ExPASy Swiss-Prot
Match: RL32_NEUCR (60S ribosomal protein L32 OS=Neurospora crassa GN=rpl-32 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.393e-33
Identity = 66/109 (60.55%), Postives = 88/109 (80.73%), Query Frame = 1
Query:   94 QSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQ 420
            QSDR + V   WR+PKGID+RVRR+F+G + MP+IGYGS+KKTRH +P+G K F+V NV ++ELL+MHN+TY AEIAHNVS++KR EI+ RA QL V VTN  A++ ++
Sbjct:   22 QSDRFMRVDSAWRKPKGIDNRVRRRFRGTLAMPSIGYGSNKKTRHMMPSGHKAFLVSNVKDVELLLMHNKTYAAEIAHNVSSRKRIEIIARAKQLSVKVTNAKAKVTTE 130          
BLAST of CF832058 vs. ExPASy Swiss-Prot
Match: RL32A_SCHPO (60S ribosomal protein L32-A OS=Schizosaccharomyces pombe GN=rpl32a PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 9.095e-33
Identity = 68/110 (61.82%), Postives = 88/110 (80.00%), Query Frame = 1
Query:   94 QSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQE 423
            QSDR   V E+WR+P+GIDS VRR+F+G + MP IGYG++KKTR+ +PNG K F+V NV+++ELL+MHN+TY AEIA NVS +KR EIVE+A  L V VTN  A++RSQE
Sbjct:   18 QSDRFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMPNGLKAFLVRNVSDVELLLMHNKTYAAEIAGNVSARKRVEIVEKARALGVKVTNAGAKVRSQE 127          
BLAST of CF832058 vs. ExPASy Swiss-Prot
Match: RL32B_SCHPO (60S ribosomal protein L32-B OS=Schizosaccharomyces pombe GN=rpl32b PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.514e-32
Identity = 67/110 (60.91%), Postives = 87/110 (79.09%), Query Frame = 1
Query:   94 QSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQE 423
            QSD    V E+WR+P+GIDS VRR+F+G + MP IGYG++KKTR+ +PNG K F+V NV+++ELL+MHN+TY AEIA NVS +KR EIVE+A  L V VTN  A++RSQE
Sbjct:   18 QSDLFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMPNGLKAFLVRNVSDVELLLMHNKTYAAEIASNVSARKRVEIVEKARALGVKVTNAGAKVRSQE 127          
BLAST of CF832058 vs. ExPASy Swiss-Prot
Match: RL32_DICDI (60S ribosomal protein L32 OS=Dictyostelium discoideum GN=rpl32 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.112e-30
Identity = 70/133 (52.63%), Postives = 88/133 (66.17%), Query Frame = 1
Query:   31 MAVPLLTTKIVXXXXXXXXXPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 429
            M  P+  TKIV          QSD    V  +WR+P+GID+RVRR+F G   MP+IG+GS K T+   P+GFK+FV+ NV ELE+L+M NR Y A I H VS K RK IVERAA+L++ VT   ARLRS+E E
Sbjct:    1 MPSPINRTKIVKKKTTKFNRFQSDLFKRVGASWRKPRGIDNRVRRRFSGSRAMPSIGFGSAKATKDVCPDGFKRFVIRNVQELEVLLMQNRRYAAVIFHGVSAKSRKAIVERAAELNIKVTTPNARLRSEERE 133          
BLAST of CF832058 vs. ExPASy Swiss-Prot
Match: RL32_ASHGO (60S ribosomal protein L32 OS=Ashbya gossypii GN=RPL32 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.348e-27
Identity = 65/127 (51.18%), Postives = 80/127 (62.99%), Query Frame = 1
Query:   31 MAVPLLTTKIVXXXXXXXXXPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARL 411
            MA  L   KIV           SDR   V ENWR+ KGIDS VRR+F+G +  P IGYGS+KKTR   P+G K ++V N+ +LE+LMMH +TY AEIA NVS+K R  I+ RA  L + VTN   RL
Sbjct:    1 MAASLPHPKIVKKHTKKFKRHHSDRYHRVAENWRKQKGIDSVVRRRFRGQISEPTIGYGSNKKTRFMTPSGHKTYLVSNIKDLEVLMMHTKTYAAEIASNVSSKNRVSILARAKALGIKVTNPKGRL 127          
The following BLAST results are available for this feature:
BLAST of CF832058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RL32_DROMD4.503e-4062.3160S ribosomal protein L32 OS=Drosophila madeirensi... [more]
RL32_DROGU4.503e-4062.3160S ribosomal protein L32 OS=Drosophila guanche GN... [more]
RL32_DROBF4.503e-4062.3160S ribosomal protein L32 OS=Drosophila bifasciata... [more]
RL32_APIME2.919e-3963.0860S ribosomal protein L32 OS=Apis mellifera GN=RpL... [more]
RL32P_MOUSE1.226e-3759.23Putative 60S ribosomal protein L32' OS=Mus musculu... [more]
RL32_NEUCR2.393e-3360.5560S ribosomal protein L32 OS=Neurospora crassa GN=... [more]
RL32A_SCHPO9.095e-3361.8260S ribosomal protein L32-A OS=Schizosaccharomyces... [more]
RL32B_SCHPO4.514e-3260.9160S ribosomal protein L32-B OS=Schizosaccharomyces... [more]
RL32_DICDI1.112e-3052.6360S ribosomal protein L32 OS=Dictyostelium discoid... [more]
RL32_ASHGO3.348e-2751.1860S ribosomal protein L32 OS=Ashbya gossypii GN=RP... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01D23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01D23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832058 ID=CF832058; Name=CF832058; organism=Citrus sinensis; type=EST; length=655bp
GCAGAAGCCGCCGCTCATCGTTTCAGAAAAATGGCTGTTCCTTTGCTGAC
CACGAAGATAGTGAAGAAGCGTTTCAAGAAGTTCAAGAGGCCCCAGAGTG
ACAGGAAGATATCAGTGAAGGAAAATTGGCGAAGGCCGAAGGGTATTGAT
TCACGTGTCAGGAGAAAGTTCAAAGGATGTGTTCTGATGCCCAATATTGG
CTACGGCTCGGACAAGAAAACACGCCACTATCTGCCCAATGGATTCAAGA
AGTTTGTTGTGCACAATGTCAATGAACTGGAACTCTTGATGATGCACAAC
AGGACTTATTGTGCTGAGATAGCCCACAACGTATCAACCAAGAAGAGAAA
GGAGATTGTCGAGCGTGCTGCACAATTGGATGTTGTGGTCACCAACAAAT
TGGCCAGGTTGCGCAGCCAGGAGGAGGAGTAAAAATTGGTTTCTATATTG
TGTTAGTGTTTGCTTTTTGGCCAAATGTTTCCTAGGTTGTCTTTGGAATG
GATGAACATTTCCAGGGTTGAATTATGATGTATTTTCTATTTTTGTCACC
TGAATGATATTTTGAATTTGTTGTTTTTTGCGGAGCATGATTAATGTTAT
GTCAACTTAGGAGTTAAGGTTTATGGCCAAGCCTTTTATTAAAAAAAAAA
AAAAA
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