CF832058

Overview
NameCF832058
Unique NameCF832058
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12693 contig Csv1_Contig12693:146..801. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832058 vs. ExPASy Swiss-Prot
Match: RL32_THEGJ (50S ribosomal protein L32e OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl32e PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.129e-13
Identity = 39/90 (43.33%), Postives = 55/90 (61.11%), Query Frame = 1
Query:  127 WRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTN 396
            WRRPKGIDS++R K KG    P+IG+ S +  R   P+G+++ +VHNV ELE +        A IA  V  +KR+ I+ RA +L + V N
Sbjct:   38 WRRPKGIDSKMRLKKKGKPRSPSIGWSSPRAVRGLHPSGYEEVLVHNVKELEAI--DPTRQAARIARTVGARKREAIIARAKELGIKVLN 125          
BLAST of CF832058 vs. ExPASy Swiss-Prot
Match: RL32_THEON (50S ribosomal protein L32e OS=Thermococcus onnurineus (strain NA1) GN=rpl32e PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.005e-13
Identity = 40/90 (44.44%), Postives = 55/90 (61.11%), Query Frame = 1
Query:  127 WRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTN 396
            WRRPKGIDS++R K KG    P+IG+ S +  R   P+G+++ +VHNV ELE +        A IA  V  +KR+ I+ RA +L V V N
Sbjct:   38 WRRPKGIDSKMRLKKKGKARSPSIGWSSPRLVRGLHPSGYEEVLVHNVKELEAI--DPARQAARIARTVGARKREMILARAKELGVKVLN 125          
BLAST of CF832058 vs. ExPASy Swiss-Prot
Match: RL32_PYRKO (50S ribosomal protein L32e OS=Pyrococcus kodakaraensis GN=rpl32e PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.005e-13
Identity = 41/90 (45.56%), Postives = 55/90 (61.11%), Query Frame = 1
Query:  127 WRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTN 396
            WRRPKGIDS++R K KG    P+IG+ S K  R   P+G+++ +VHNV ELE +        A IA  V  +KR+ I+ RA +L V V N
Sbjct:   38 WRRPKGIDSKMRLKKKGKPRSPSIGWSSPKAVRGLHPSGYEEVLVHNVKELEAI--DPTRQAARIAGTVGARKREMILARAKELGVKVLN 125          
BLAST of CF832058 vs. ExPASy Swiss-Prot
Match: RL32_MAIZE (60S ribosomal protein L32 (Fragment) OS=Zea mays GN=RPL32 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.783e-12
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 1
Query:  304 TYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 429
            TYCAEIAHNVSTKKRKEIVERAAQLD+VV  KLAR  SQE+E
Sbjct:    1 TYCAEIAHNVSTKKRKEIVERAAQLDIVVPTKLARAPSQEDE 42          
BLAST of CF832058 vs. ExPASy Swiss-Prot
Match: RL32_SULSO (50S ribosomal protein L32e OS=Sulfolobus solfataricus GN=rpl32e PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.329e-12
Identity = 35/98 (35.71%), Postives = 58/98 (59.18%), Query Frame = 1
Query:  106 KISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNK 399
            ++  +E WRRP G D++ R K +G   + ++GY   KK R + P+G ++ +VHNVNEL  +          I+ +V  KKR EI+ +A +L + V+N+
Sbjct:   37 RLGRQEKWRRPYGRDNKTRLKVRGFPAIVSVGYRLPKKVRGFHPSGLRQVIVHNVNELVKVQNQKDNVIVTISSSVGFKKRLEILNKARELGLKVSNE 134          
BLAST of CF832058 vs. ExPASy Swiss-Prot
Match: RL32_SULIY (50S ribosomal protein L32e OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl32e PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.189e-12
Identity = 34/98 (34.69%), Postives = 59/98 (60.20%), Query Frame = 1
Query:  106 KISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNK 399
            ++  +E WRRP G D++ R K +G   + ++GY   K+ R + P+G ++ +VHNVN+L  +     +    IA +V  KKR EI+ +A +L + V+N+
Sbjct:   37 RLGRQEKWRRPYGRDNKTRLKVRGFPAIVSVGYRLPKEVRGFHPSGLRQVIVHNVNDLVKVQNQKDSVIVTIASSVGFKKRLEILNKARELGLKVSNE 134          
BLAST of CF832058 vs. ExPASy Swiss-Prot
Match: RL32_SULIN (50S ribosomal protein L32e OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl32e PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.189e-12
Identity = 34/98 (34.69%), Postives = 59/98 (60.20%), Query Frame = 1
Query:  106 KISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNK 399
            ++  +E WRRP G D++ R K +G   + ++GY   K+ R + P+G ++ +VHNVN+L  +     +    IA +V  KKR EI+ +A +L + V+N+
Sbjct:   37 RLGRQEKWRRPYGRDNKTRLKVRGFPAIVSVGYRLPKEVRGFHPSGLRQVIVHNVNDLVKVQNQKDSVIVTIASSVGFKKRLEILNKARELGLKVSNE 134          
BLAST of CF832058 vs. ExPASy Swiss-Prot
Match: RL32_SULIM (50S ribosomal protein L32e OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl32e PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.189e-12
Identity = 34/98 (34.69%), Postives = 59/98 (60.20%), Query Frame = 1
Query:  106 KISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNK 399
            ++  +E WRRP G D++ R K +G   + ++GY   K+ R + P+G ++ +VHNVN+L  +     +    IA +V  KKR EI+ +A +L + V+N+
Sbjct:   37 RLGRQEKWRRPYGRDNKTRLKVRGFPAIVSVGYRLPKEVRGFHPSGLRQVIVHNVNDLVKVQNQKDSVIVTIASSVGFKKRLEILNKARELGLKVSNE 134          
BLAST of CF832058 vs. ExPASy Swiss-Prot
Match: RL32_SULIL (50S ribosomal protein L32e OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl32e PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.189e-12
Identity = 34/98 (34.69%), Postives = 59/98 (60.20%), Query Frame = 1
Query:  106 KISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNK 399
            ++  +E WRRP G D++ R K +G   + ++GY   K+ R + P+G ++ +VHNVN+L  +     +    IA +V  KKR EI+ +A +L + V+N+
Sbjct:   37 RLGRQEKWRRPYGRDNKTRLKVRGFPAIVSVGYRLPKEVRGFHPSGLRQVIVHNVNDLVKVQNQKDSVIVTIASSVGFKKRLEILNKARELGLKVSNE 134          
BLAST of CF832058 vs. ExPASy Swiss-Prot
Match: RL32_SULIK (50S ribosomal protein L32e OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl32e PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.189e-12
Identity = 34/98 (34.69%), Postives = 59/98 (60.20%), Query Frame = 1
Query:  106 KISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNK 399
            ++  +E WRRP G D++ R K +G   + ++GY   K+ R + P+G ++ +VHNVN+L  +     +    IA +V  KKR EI+ +A +L + V+N+
Sbjct:   37 RLGRQEKWRRPYGRDNKTRLKVRGFPAIVSVGYRLPKEVRGFHPSGLRQVIVHNVNDLVKVQNQKDSVIVTIASSVGFKKRLEILNKARELGLKVSNE 134          
The following BLAST results are available for this feature:
BLAST of CF832058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RL32_THEGJ6.129e-1343.3350S ribosomal protein L32e OS=Thermococcus gammato... [more]
RL32_THEON8.005e-1344.4450S ribosomal protein L32e OS=Thermococcus onnurin... [more]
RL32_PYRKO8.005e-1345.5650S ribosomal protein L32e OS=Pyrococcus kodakarae... [more]
RL32_MAIZE1.783e-1285.7160S ribosomal protein L32 (Fragment) OS=Zea mays G... [more]
RL32_SULSO2.329e-1235.7150S ribosomal protein L32e OS=Sulfolobus solfatari... [more]
RL32_SULIY5.189e-1234.6950S ribosomal protein L32e OS=Sulfolobus islandicu... [more]
RL32_SULIN5.189e-1234.6950S ribosomal protein L32e OS=Sulfolobus islandicu... [more]
RL32_SULIM5.189e-1234.6950S ribosomal protein L32e OS=Sulfolobus islandicu... [more]
RL32_SULIL5.189e-1234.6950S ribosomal protein L32e OS=Sulfolobus islandicu... [more]
RL32_SULIK5.189e-1234.6950S ribosomal protein L32e OS=Sulfolobus islandicu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01D23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01D23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832058 ID=CF832058; Name=CF832058; organism=Citrus sinensis; type=EST; length=655bp
GCAGAAGCCGCCGCTCATCGTTTCAGAAAAATGGCTGTTCCTTTGCTGAC
CACGAAGATAGTGAAGAAGCGTTTCAAGAAGTTCAAGAGGCCCCAGAGTG
ACAGGAAGATATCAGTGAAGGAAAATTGGCGAAGGCCGAAGGGTATTGAT
TCACGTGTCAGGAGAAAGTTCAAAGGATGTGTTCTGATGCCCAATATTGG
CTACGGCTCGGACAAGAAAACACGCCACTATCTGCCCAATGGATTCAAGA
AGTTTGTTGTGCACAATGTCAATGAACTGGAACTCTTGATGATGCACAAC
AGGACTTATTGTGCTGAGATAGCCCACAACGTATCAACCAAGAAGAGAAA
GGAGATTGTCGAGCGTGCTGCACAATTGGATGTTGTGGTCACCAACAAAT
TGGCCAGGTTGCGCAGCCAGGAGGAGGAGTAAAAATTGGTTTCTATATTG
TGTTAGTGTTTGCTTTTTGGCCAAATGTTTCCTAGGTTGTCTTTGGAATG
GATGAACATTTCCAGGGTTGAATTATGATGTATTTTCTATTTTTGTCACC
TGAATGATATTTTGAATTTGTTGTTTTTTGCGGAGCATGATTAATGTTAT
GTCAACTTAGGAGTTAAGGTTTATGGCCAAGCCTTTTATTAAAAAAAAAA
AAAAA
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