CF832063

Overview
NameCF832063
Unique NameCF832063
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_SHESA (50S ribosomal protein L2 OS=Shewanella sp. (strain ANA-3) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.788e-16
Identity = 50/133 (37.59%), Postives = 72/133 (54.14%), Query Frame = -2
Query:  384 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 782
            +  G +A +  GN +P+R+IP G+VV  VE   G    +AR++G Y  +++   D     ++L SG  + +P  CRA  G+V       + L KAG      +  R   P VRGVAMNPV+HPHGGG  +  G
Sbjct:  116 IQSGVEAEIKTGNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVAR--DGAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAG-----AKRWRGVRPTVRGVAMNPVDHPHGGGEGRTSG 241          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_SHEPC (50S ribosomal protein L2 OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.788e-16
Identity = 50/133 (37.59%), Postives = 72/133 (54.14%), Query Frame = -2
Query:  384 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 782
            +  G +A +  GN +P+R+IP G+VV  VE   G    +AR++G Y  +++   D     ++L SG  + +P  CRA  G+V       + L KAG      +  R   P VRGVAMNPV+HPHGGG  +  G
Sbjct:  116 IQSGVEAEIKTGNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVAR--DGAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAG-----AKRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG 241          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_SHEON (50S ribosomal protein L2 OS=Shewanella oneidensis GN=rplB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.788e-16
Identity = 50/133 (37.59%), Postives = 72/133 (54.14%), Query Frame = -2
Query:  384 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 782
            +  G +A +  GN +P+R+IP G+VV  VE   G    +AR++G Y  +++   D     ++L SG  + +P  CRA  G+V       + L KAG      +  R   P VRGVAMNPV+HPHGGG  +  G
Sbjct:  116 IQSGVEAEIKTGNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVAR--DGAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAG-----AKRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG 241          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_NITWN (50S ribosomal protein L2 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.788e-16
Identity = 49/133 (36.84%), Postives = 70/133 (52.63%), Query Frame = -2
Query:  384 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 782
            V  G    +  GNV+P+ ++P G +V NVE  +G  G LAR++G YA I+    D D   ++L SG ++++   CR  IG V+        + KAG      R   N     RGV MNP++HPHGGG  +  G
Sbjct:  116 VVAGNYVDVKPGNVMPLGNMPVGTIVHNVEMKIGKGGQLARSAGTYAQIVGR--DQDYVILRLNSGEQRLVHGRCRGAIGAVSNPDHMNTSVGKAGRTRWMGRRPHN-----RGVVMNPIDHPHGGGEGRTSG 241          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_METPB (50S ribosomal protein L2 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.788e-16
Identity = 52/142 (36.62%), Postives = 74/142 (52.11%), Query Frame = -2
Query:  369 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIGHASTV 782
            V  G+   +  GN  P+ S+P G +V NVE  +G  G +AR++G+YA I+    D     ++L SG ++++   C A +G V+        L KAG         RN W    P  RGVAMNPV+HPHGGG  +  G  + V
Sbjct:  117 VVAGESVDVKPGNAGPIGSMPVGTIVHNVELKIGKGGAIARSAGNYAQIVGR--DQGYVTLRLNSGEQRLVHGQCFASVGAVSNPDHMNISLGKAG---------RNRWLGKRPHNRGVAMNPVDHPHGGGEGRTSGGRNPV 247          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_EHRCR (50S ribosomal protein L2 OS=Ehrlichia chaffeensis (strain Arkansas) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.788e-16
Identity = 57/142 (40.14%), Postives = 77/142 (54.23%), Query Frame = -2
Query:  369 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIGHASTV 782
            V  G  A ++ GN L ++SIP G  V NVE   G+ GV+AR++G YA ++S   D     ++L SG  + + S CRA IG V+        L KAG         R+ W    P VRGVAMNP++HPHGGG  +  G  + V
Sbjct:  116 VISGDGADILPGNCLLLKSIPVGTFVHNVELRPGNGGVIARSAGTYAQLMS--KDGMYVLLRLSSGEIRKVLSDCRATIGIVSNLDNQNVKLGKAG---------RSRWLGIRPTVRGVAMNPIDHPHGGGEGKTSGGRNPV 246          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_CLOB6 (50S ribosomal protein L2 OS=Clostridium botulinum (strain 657 / Type Ba4) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.788e-16
Identity = 53/137 (38.69%), Postives = 74/137 (54.01%), Query Frame = -2
Query:  375 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHAS 782
            V  G ++ + VGN LP+R+IP G V+ N+E   G    L R++G+ A +++   + D ++V+LPSG  + I   CRA IG V+        + KAG   H         P VRG  MNP +HPHGGG     IGH S
Sbjct:  116 VVSGPESDIKVGNCLPIRNIPVGTVIHNIELAAGKGAQLVRSAGNSAQLMA--KEGDYSQVRLPSGEVRYIRVECRATIGVVSNQTNEIVNIGKAGRKRH-----MGVRPTVRGSVMNPNDHPHGGGEGRSPIGHPS 245          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_ANATD (50S ribosomal protein L2 OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.788e-16
Identity = 54/139 (38.85%), Postives = 73/139 (52.52%), Query Frame = -2
Query:  381 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQ-HIGH 782
            V  G  A + VGN LP+++IP G ++ N+E   G  G L R++G  A +++   +     +KLPSG  + +   CRA IGQV         + KAG         R  W    P VRG AMNPV+HPHGGG  +  IGH
Sbjct:  117 VMSGPDADIKVGNALPLKNIPVGTMIHNIELMPGKGGQLCRSAGSVAQLMA--KEGKYALIKLPSGELRYVSQECRATIGQVGNLDHENVRIGKAG---------RKRWMGIRPTVRGSAMNPVDHPHGGGEGKAPIGH 244          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_ACIC5 (50S ribosomal protein L2 OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.788e-16
Identity = 52/139 (37.41%), Postives = 72/139 (51.80%), Query Frame = -2
Query:  384 QFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIG 788
            Q +  G +A ++VGN LP+++IP G  V NVE   G    + R++G  A +++   + D   +KLPSG  + +   C A IGQV         + KAG         RN W    P  RGV MNPV+HPHGGG  +  G
Sbjct:  114 QTIMSGPEADILVGNALPLKNIPAGTTVHNVELRPGKGAQMVRSAGASAQLVA--KEGDYALLKLPSGETRRVLINCMATIGQVGNTDHENVSIGKAG---------RNRWKGIRPTNRGVTMNPVDHPHGGGEGKTSG 241          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_ACAM1 (50S ribosomal protein L2 OS=Acaryochloris marina (strain MBIC 11017) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.788e-16
Identity = 52/127 (40.94%), Postives = 70/127 (55.12%), Query Frame = -2
Query:  402 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 782
            +  G  A + VGN LP+  IP G  V NVE   G  G LARA+G  A +++   +     +KLPSG  ++    C A IGQV         + KAG   ++++ +R   PKVRG  MNPV+HPHGGG
Sbjct:  116 IVAGPDAPIEVGNALPLERIPLGTEVHNVELIPGKGGQLARAAGALAQVVA--KEGKMVTLKLPSGEVRLFQKECYATIGQVGNVESNNITIGKAGR--NRWKARR---PKVRGSVMNPVDHPHGGG 235          
The following BLAST results are available for this feature:
BLAST of CF832063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_SHESA2.788e-1637.5950S ribosomal protein L2 OS=Shewanella sp. (strain... [more]
RL2_SHEPC2.788e-1637.5950S ribosomal protein L2 OS=Shewanella putrefacien... [more]
RL2_SHEON2.788e-1637.5950S ribosomal protein L2 OS=Shewanella oneidensis ... [more]
RL2_NITWN2.788e-1636.8450S ribosomal protein L2 OS=Nitrobacter winogradsk... [more]
RL2_METPB2.788e-1636.6250S ribosomal protein L2 OS=Methylobacterium popul... [more]
RL2_EHRCR2.788e-1640.1450S ribosomal protein L2 OS=Ehrlichia chaffeensis ... [more]
RL2_CLOB62.788e-1638.6950S ribosomal protein L2 OS=Clostridium botulinum ... [more]
RL2_ANATD2.788e-1638.8550S ribosomal protein L2 OS=Anaerocellum thermophi... [more]
RL2_ACIC52.788e-1637.4150S ribosomal protein L2 OS=Acidobacterium capsula... [more]
RL2_ACAM12.788e-1640.9450S ribosomal protein L2 OS=Acaryochloris marina (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01E03_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832063 ID=CF832063; Name=CF832063; organism=Citrus sinensis; type=EST; length=789bp
TTTTTTTTTTTTTTTTTCGAAAAAACAACATTTCCATTTACTCAATTCGA
TGAAGGCATCCATTAATATATCCAAAAATATCAAACTCAACTAAAGTTTT
GGATAAGAGCAAATTAAGCTAAACTTTAAGCCAACATAATTTAACATCAG
GATCATCCCAGAGATCCAAATCTGAACAAATTTTTCCAAGGTAATGATGC
AGCAGGAAAAGTAAAATGACAGATCGCGATAGAGAGACGATTTGTGGTAA
CACAAAGGATTTAAGCCTTGTCGGCCTTGGCTGCAGTGGCAGCAGCTTGT
CCTCTGAGCCGACCAGTCCTCCTGGCTGCAATAAGACCAACCTTCTGGCC
AGGGGGAGCATCACGCCTAACAGTGCTAGCATGACCAATGTGCTGGTGGT
TACCTCCTCCATGAGGATGCTCCACTGGGTTCATGGCCACACCACGCACC
TTAGGCCAGCAGTTTCGCTTCACTCTGAATTTGTGGTATGCATTACCAGC
TTTGAGAAGGGGCTTCTCAGTCCTCCCTCCGCCGGCAACCTGCCCAATCA
TAGCTCTGCAGCCACTTGGAATAATCTTTTTGGCACCAGATGGAAGCTTG
ACCCTGGTGGTGTCATTATCGGGGTTATGACTGATGATAACGGCATAATC
ACCAGAAGCTCTAGCGAGAACACCGCGATCACCAACATGATGCTCAACGT
TGCAAACGACAGCTCCTTCAGGGATAGATCTAACGGGCAACACATTACCA
ACCATCAGAGTGGCTTTCTTGCCGCAGTACACGAACTGA
back to top