CF832063

Overview
NameCF832063
Unique NameCF832063
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RK2_CUSGR (50S ribosomal protein L2, plastid OS=Cuscuta gronovii GN=rpl2 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.788e-16
Identity = 51/127 (40.16%), Postives = 73/127 (57.48%), Query Frame = -2
Query:  402 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 782
            +  G + ++ +GN LP+  IP G  + N+E   G  G LARA+G  A +I+   +  +  +KLPSG  + I   C A +GQV   G  +K L KAG    ++  KR   P VRG+ MNP++HPHGGG
Sbjct:  111 IISGPEVSIKIGNSLPLNEIPLGTSLHNLEITRGKGGQLARAAGAAAKLIA--KEGQSATLKLPSGELRFISKQCSATVGQVGNIGVNQKSLGKAG--VKRWLGKR---PIVRGLVMNPIDHPHGGG 230          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RK2_CHLAT (50S ribosomal protein L2, chloroplastic OS=Chlorokybus atmophyticus GN=rpl2 PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.788e-16
Identity = 51/131 (38.93%), Postives = 68/131 (51.91%), Query Frame = -2
Query:  402 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 782
            +  G  A L +GN LP+  IP G  + N+E   G  G L RA+G  A +++   +     V+LPSG  +++   C A IGQV     +   + KAG         R  W    PKVRGV MNPV+HPHGGG
Sbjct:  116 IIAGPDAPLQLGNALPLSKIPLGTGIHNIEVSPGQGGKLVRAAGGVAQLVAK--EGSYVTVRLPSGEVRLVLKECSATIGQVGNVDASNVTIGKAG---------RKRWLGQRPKVRGVVMNPVDHPHGGG 235          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_SYMTH (50S ribosomal protein L2 OS=Symbiobacterium thermophilum GN=rplB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.641e-16
Identity = 52/128 (40.62%), Postives = 71/128 (55.47%), Query Frame = -2
Query:  402 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYH-KFRVKRNCWPKVRGVAMNPVEHPHGGG 782
            V  G  A + VGN LP+ +IP G +V N+E + G  G L R++G  A I++   +     ++LPSG ++ +   CRA +GQV         + KAG   H  FR      P VRGV MNPV+HPHGGG
Sbjct:  117 VVSGPDADIKVGNALPLENIPVGTIVHNIELYPGRGGQLVRSAGASAQIMA--KEGRYALLRLPSGEQRKVLLACRATVGQVGNLEHENIVIGKAGRKRHLGFR------PAVRGVVMNPVDHPHGGG 236          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_NOSP7 (50S ribosomal protein L2 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.641e-16
Identity = 55/131 (41.98%), Postives = 70/131 (53.44%), Query Frame = -2
Query:  402 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 782
            +  G ++    GN LP+  IP G  V NVE   G  G + RA+G  A +++   + D   +KLPSG  ++I   C A IGQV   G T+   L AG A       RN W    PKVRG  MNPV+HPHGGG
Sbjct:  116 IISGPESPFEDGNALPLSRIPLGTSVHNVEMTPGKGGQIVRAAGASAQVVAK--EGDYVTLKLPSGEVRLIRRDCYATIGQV---GNTDARNLSAGKA------GRNRWKGRRPKVRGSVMNPVDHPHGGG 235          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_MYCH7 (50S ribosomal protein L2 OS=Mycoplasma hyopneumoniae (strain 7448) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.641e-16
Identity = 58/150 (38.67%), Postives = 76/150 (50.67%), Query Frame = -2
Query:  342 QFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHASTVRRDAPPGQK 788
            Q +  G K+ ++VGN LP+  IPEG  V N+E   G    L R++G +A I   + D     +KL SG  + I + CRA IG V     +   + KAG   HK        P VRG  MNP +HPHGGG   Q IG  S +    P G+K
Sbjct:  115 QKISSGPKSDILVGNALPLAKIPEGTFVHNIELKPGAGAKLIRSAGTWAQIQGRDEDGKYVILKLKSGEYRRILATCRATIGVVGNEENSLVNIGKAGRNRHK-----GIRPTVRGSVMNPNDHPHGGGEGKQPIGRKSPL---TPWGKK 256          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_MYCH2 (50S ribosomal protein L2 OS=Mycoplasma hyopneumoniae (strain 232) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.641e-16
Identity = 58/150 (38.67%), Postives = 76/150 (50.67%), Query Frame = -2
Query:  342 QFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHASTVRRDAPPGQK 788
            Q +  G K+ ++VGN LP+  IPEG  V N+E   G    L R++G +A I   + D     +KL SG  + I + CRA IG V     +   + KAG   HK        P VRG  MNP +HPHGGG   Q IG  S +    P G+K
Sbjct:  115 QKISSGPKSDILVGNALPLAKIPEGTFVHNIELKPGAGAKLIRSAGTWAQIQGRDEDGKYVILKLKSGEYRRILATCRATIGVVGNEENSLVNIGKAGRNRHK-----GIRPTVRGSVMNPNDHPHGGGEGKQPIGRKSPL---TPWGKK 256          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_METS4 (50S ribosomal protein L2 OS=Methylobacterium sp. (strain 4-46) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.641e-16
Identity = 49/137 (35.77%), Postives = 73/137 (53.28%), Query Frame = -2
Query:  384 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIG 782
            V  G++  +  GN +P+ ++P G +V NVE  +G  G LAR++G+YA I+    D     ++L SG ++++   C A +G V+        L KAG         R  W    P  RGVAMNP++HPHGGG  +  G
Sbjct:  117 VVSGEQVDIKPGNAMPIGNMPVGTIVHNVELKIGKGGALARSAGNYAQIVGR--DQGYVTLRLNSGEQRLVHGQCYATVGAVSNPDHMNISLGKAG---------RKRWLGRRPHNRGVAMNPIDHPHGGGEGRTSG 242          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_METI4 (50S ribosomal protein L2 OS=Methylacidiphilum infernorum (isolate V4) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.641e-16
Identity = 56/147 (38.10%), Postives = 80/147 (54.42%), Query Frame = -2
Query:  345 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW-PKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQ 782
            V  G  A   VGN LP+++IP G  + N+E   G  G L R++G  A ++    D +   VKLPSG  + + + C A +GQV+      K L KAG      R +   W P+VRGVAMNPV+HP+GGG  +  G     + ++P G+
Sbjct:  116 VVSGPDAPPEVGNSLPLKNIPSGLPIYNIELVPGKGGQLVRSAGSSARMMGL--DKEYAIVKLPSGEIRKVCAECYATVGQVSNPDHFNKSLGKAG------RTRWLGWRPRVRGVAMNPVDHPNGGGQGKSKGGGGWQQLESPWGK 254          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_FRATO (50S ribosomal protein L2 OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.641e-16
Identity = 51/133 (38.35%), Postives = 73/133 (54.89%), Query Frame = -2
Query:  384 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 782
            V  G+K  + VGN +P+R+IP G V+ N+E        + R++G +A ++    DN    ++L SG  + +   CRA+IG V+      K L KAG      +  R   P VRGVAMNPV+HPHGGG  +  G
Sbjct:  117 VISGEKVDIAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLVGK--DNAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAGA-----KRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG 242          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_FRATH (50S ribosomal protein L2 OS=Francisella tularensis subsp. holarctica (strain LVS) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.641e-16
Identity = 51/133 (38.35%), Postives = 73/133 (54.89%), Query Frame = -2
Query:  384 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 782
            V  G+K  + VGN +P+R+IP G V+ N+E        + R++G +A ++    DN    ++L SG  + +   CRA+IG V+      K L KAG      +  R   P VRGVAMNPV+HPHGGG  +  G
Sbjct:  117 VISGEKVDIAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLVGK--DNAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAGA-----KRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG 242          
The following BLAST results are available for this feature:
BLAST of CF832063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2_CUSGR2.788e-1640.1650S ribosomal protein L2, plastid OS=Cuscuta grono... [more]
RK2_CHLAT2.788e-1638.9350S ribosomal protein L2, chloroplastic OS=Chlorok... [more]
RL2_SYMTH3.641e-1640.6350S ribosomal protein L2 OS=Symbiobacterium thermo... [more]
RL2_NOSP73.641e-1641.9850S ribosomal protein L2 OS=Nostoc punctiforme (st... [more]
RL2_MYCH73.641e-1638.6750S ribosomal protein L2 OS=Mycoplasma hyopneumoni... [more]
RL2_MYCH23.641e-1638.6750S ribosomal protein L2 OS=Mycoplasma hyopneumoni... [more]
RL2_METS43.641e-1635.7750S ribosomal protein L2 OS=Methylobacterium sp. (... [more]
RL2_METI43.641e-1638.1050S ribosomal protein L2 OS=Methylacidiphilum infe... [more]
RL2_FRATO3.641e-1638.3550S ribosomal protein L2 OS=Francisella tularensis... [more]
RL2_FRATH3.641e-1638.3550S ribosomal protein L2 OS=Francisella tularensis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01E03_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832063 ID=CF832063; Name=CF832063; organism=Citrus sinensis; type=EST; length=789bp
TTTTTTTTTTTTTTTTTCGAAAAAACAACATTTCCATTTACTCAATTCGA
TGAAGGCATCCATTAATATATCCAAAAATATCAAACTCAACTAAAGTTTT
GGATAAGAGCAAATTAAGCTAAACTTTAAGCCAACATAATTTAACATCAG
GATCATCCCAGAGATCCAAATCTGAACAAATTTTTCCAAGGTAATGATGC
AGCAGGAAAAGTAAAATGACAGATCGCGATAGAGAGACGATTTGTGGTAA
CACAAAGGATTTAAGCCTTGTCGGCCTTGGCTGCAGTGGCAGCAGCTTGT
CCTCTGAGCCGACCAGTCCTCCTGGCTGCAATAAGACCAACCTTCTGGCC
AGGGGGAGCATCACGCCTAACAGTGCTAGCATGACCAATGTGCTGGTGGT
TACCTCCTCCATGAGGATGCTCCACTGGGTTCATGGCCACACCACGCACC
TTAGGCCAGCAGTTTCGCTTCACTCTGAATTTGTGGTATGCATTACCAGC
TTTGAGAAGGGGCTTCTCAGTCCTCCCTCCGCCGGCAACCTGCCCAATCA
TAGCTCTGCAGCCACTTGGAATAATCTTTTTGGCACCAGATGGAAGCTTG
ACCCTGGTGGTGTCATTATCGGGGTTATGACTGATGATAACGGCATAATC
ACCAGAAGCTCTAGCGAGAACACCGCGATCACCAACATGATGCTCAACGT
TGCAAACGACAGCTCCTTCAGGGATAGATCTAACGGGCAACACATTACCA
ACCATCAGAGTGGCTTTCTTGCCGCAGTACACGAACTGA
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