CF832063

Overview
NameCF832063
Unique NameCF832063
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_BARBK (50S ribosomal protein L2 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rplB1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.755e-16
Identity = 51/133 (38.35%), Postives = 75/133 (56.39%), Query Frame = -2
Query:  384 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 782
            V  G    +  GN +P+ ++P GA+V NVE   G  G +AR++G YA ++    D     ++L SG ++++ S C A +G V+          KAG +  ++R KR   P VRGVAMNPV+HPHGGG  +  G
Sbjct:  116 VVAGLSVDVKPGNAMPLGNMPVGAIVHNVEMKPGKGGQIARSAGAYAQLVGR--DQGMAILRLNSGEQRLVSSNCFATVGAVSNPDHGNINDGKAGRS--RWRGKR---PHVRGVAMNPVDHPHGGGEGRTSG 241          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_ALCBS (50S ribosomal protein L2 OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.755e-16
Identity = 48/133 (36.09%), Postives = 75/133 (56.39%), Query Frame = -2
Query:  384 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 782
            +  G+ A + +GN LP+R+IP G+ + NVE   G  G +AR++G    +++   D     ++L SG  + + + C+A IG+V+    + + L KAG      +  R   P VRG AMNPV+HPHGGG  +  G
Sbjct:  116 IQSGEDAPIKLGNALPLRNIPLGSTIHNVEMKPGKGGQIARSAGTSVQLLA--KDGQYVTLRLRSGEMRKVHADCKATIGEVSNSEHSLRSLGKAG-----AKRWRGVRPTVRGAAMNPVDHPHGGGEGRSSG 241          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_ACIBL (50S ribosomal protein L2 OS=Acidobacteria bacterium (strain Ellin345) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.755e-16
Identity = 54/139 (38.85%), Postives = 73/139 (52.52%), Query Frame = -2
Query:  384 QFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIG 788
            Q V  G  A ++VGN LP+R+IP G VV N+E   G    +AR++G  A +++   ++D   +KLPSG  + +   C A IGQV         + KAG         R  W    P  RGV MNPV+HPHGGG  +  G
Sbjct:  114 QKVVSGPDADILVGNALPLRNIPAGTVVHNIELKPGKGAQMARSAGAQAQLVA--KESDYALLKLPSGETRRVLVDCMATIGQVGNLDYENVAIGKAG---------RTRWMGVRPTNRGVVMNPVDHPHGGGEGKTSG 241          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_XANP2 (50S ribosomal protein L2 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.210e-16
Identity = 53/142 (37.32%), Postives = 73/142 (51.41%), Query Frame = -2
Query:  369 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIGHASTV 782
            V  G++  +  GN  P+ S+P G +V NVE  VG  G +AR++G YA I+    D     V+L SG ++++   C A +G V+        L KAG         RN W    P  RGV MNPV+HPHGGG  +  G  + V
Sbjct:  116 VIAGEQVDVKPGNAGPLSSLPVGTIVHNVELKVGKGGQIARSAGTYAQIVGR--DQGYVIVRLNSGEQRLVLGACYATVGAVSNPDHMNISLGKAG---------RNRWLGRKPHNRGVTMNPVDHPHGGGEGRTSGGRNPV 246          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_THENN (50S ribosomal protein L2 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.210e-16
Identity = 52/134 (38.81%), Postives = 72/134 (53.73%), Query Frame = -2
Query:  372 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHAST 773
            G  A +  GN LP+  IP G +V NVE   G  G +ARA+G Y  I++   + D   +++PSG  + +   C A +G V       +   KAG    ++  +R   P VRGVAMNPV+HPHGGG  +  GH  T
Sbjct:  120 GSDAEIKPGNALPLEKIPVGTLVHNVEFTPGKGGQIARAAGTYCQIMAK--EGDYALLRMPSGELRKVHIKCYATVGVVGNEDHKNEVHGKAGRV--RWLGRR---PHVRGVAMNPVDHPHGGGEGRGKGHHPT 246          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_POLNA (50S ribosomal protein L2 OS=Polaromonas naphthalenivorans (strain CJ2) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.210e-16
Identity = 50/129 (38.76%), Postives = 74/129 (57.36%), Query Frame = -2
Query:  402 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKR--NCWPKVRGVAMNPVEHPHGGG 782
            +  G +A + VGN LP+R+IP G+ +  +E  +G    +AR++G  A +++   +    +V++ SG  + I   CRA IG+VA    + + L KAG       VKR     P VRGV MNPV+HPHGGG
Sbjct:  116 ILSGSEAPIRVGNTLPIRNIPVGSTIHCIEMQIGKGAQIARSAGTSATLLAR--EGTYAQVRMRSGEVRKIHIECRATIGEVANEEHSLRRLGKAG-------VKRWMGIRPTVRGVVMNPVDHPHGGG 235          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_DESAA (50S ribosomal protein L2 OS=Desulfatibacillum alkenivorans (strain AK-01) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.210e-16
Identity = 52/133 (39.10%), Postives = 73/133 (54.89%), Query Frame = -2
Query:  384 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 782
            V  G +A +  GN LP+ +IP G  + N+E  VG  G + R +G +A +++   +    +V+LPSG  +++   C A IGQV   G  E   L  G A  K  + R   P VRGVAMNPV+HP GGG  +  G
Sbjct:  116 VESGPEADIKPGNALPLNNIPLGTQIHNIELKVGKGGQVVRGAGTFAQLVA--KEGKYAQVRLPSGEVRLVLLKCMATIGQV---GNVEHENLALGKAGRKRWLGRR--PSVRGVAMNPVDHPMGGGEGRSSG 241          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_CHLTE (50S ribosomal protein L2 OS=Chlorobium tepidum GN=rplB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.210e-16
Identity = 51/147 (34.69%), Postives = 78/147 (53.06%), Query Frame = -2
Query:  345 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQ 773
            G+K  + VGN +P+++IP G+ V N+E  +G  G +AR++G YAV+ +   + +   +K+PSG  + +   CRA IG +         L KAG         R+ W    P+ RG+AMNPV+HP GGG  +           +P GQ
Sbjct:  119 GEKVDIKVGNTMPLKNIPIGSDVHNIELKIGKGGQIARSAGAYAVLAAR--EGNYATLKMPSGEIRKVRIECRATIGVIGNAEHENISLGKAG---------RSRWLGIRPQTRGMAMNPVDHPMGGGEGKSKSGGGRKHPKSPWGQ 254          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_CHLP8 (50S ribosomal protein L2 OS=Chlorobaculum parvum (strain NCIB 8327) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.210e-16
Identity = 53/147 (36.05%), Postives = 76/147 (51.70%), Query Frame = -2
Query:  345 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQ 773
            G+K  + VGN +P+++IP G  V N+E   G  G +AR++G YAV+ +    + T  +KLPSG  + +   CRA IG +         L KAG         R+ W    P+ RG+AMNPV+HP GGG  +           +P GQ
Sbjct:  119 GEKVDIRVGNTMPLKNIPLGTDVHNIEMKAGKGGQMARSAGSYAVLAAREGVHAT--LKLPSGEIRKVRVECRATIGVIGNSEHENISLGKAG---------RSRWLGIRPQTRGMAMNPVDHPMGGGEGKSKSGGGRKHPKSPWGQ 254          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_CAUCR (50S ribosomal protein L2 OS=Caulobacter crescentus GN=rplB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.210e-16
Identity = 51/147 (34.69%), Postives = 75/147 (51.02%), Query Frame = -2
Query:  342 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQK 782
            V   +K  +  GN  P+R++P G ++ N+E      G +AR++G YA ++    D    +++L SG  +++   C A +G V+      + L KAG + H  R      P VRGVAMNPV+HPHGGG     G  S  R    P  K
Sbjct:  116 VVTAEKVDVKPGNASPLRTLPIGTIIHNIELKPAKGGQIARSAGAYAQLVGR--DAGYAQIRLNSGELRMVLDTCMATVGAVSNPDHMNQNLGKAGRSRHMGRR-----PHVRGVAMNPVDHPHGGGE----GRTSGGRHPVTPAGK 251          
The following BLAST results are available for this feature:
BLAST of CF832063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_BARBK4.755e-1638.3550S ribosomal protein L2 OS=Bartonella bacilliform... [more]
RL2_ALCBS4.755e-1636.0950S ribosomal protein L2 OS=Alcanivorax borkumensi... [more]
RL2_ACIBL4.755e-1638.8550S ribosomal protein L2 OS=Acidobacteria bacteriu... [more]
RL2_XANP26.210e-1637.3250S ribosomal protein L2 OS=Xanthobacter autotroph... [more]
RL2_THENN6.210e-1638.8150S ribosomal protein L2 OS=Thermotoga neapolitana... [more]
RL2_POLNA6.210e-1638.7650S ribosomal protein L2 OS=Polaromonas naphthalen... [more]
RL2_DESAA6.210e-1639.1050S ribosomal protein L2 OS=Desulfatibacillum alke... [more]
RL2_CHLTE6.210e-1634.6950S ribosomal protein L2 OS=Chlorobium tepidum GN=... [more]
RL2_CHLP86.210e-1636.0550S ribosomal protein L2 OS=Chlorobaculum parvum (... [more]
RL2_CAUCR6.210e-1634.6950S ribosomal protein L2 OS=Caulobacter crescentus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01E03_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832063 ID=CF832063; Name=CF832063; organism=Citrus sinensis; type=EST; length=789bp
TTTTTTTTTTTTTTTTTCGAAAAAACAACATTTCCATTTACTCAATTCGA
TGAAGGCATCCATTAATATATCCAAAAATATCAAACTCAACTAAAGTTTT
GGATAAGAGCAAATTAAGCTAAACTTTAAGCCAACATAATTTAACATCAG
GATCATCCCAGAGATCCAAATCTGAACAAATTTTTCCAAGGTAATGATGC
AGCAGGAAAAGTAAAATGACAGATCGCGATAGAGAGACGATTTGTGGTAA
CACAAAGGATTTAAGCCTTGTCGGCCTTGGCTGCAGTGGCAGCAGCTTGT
CCTCTGAGCCGACCAGTCCTCCTGGCTGCAATAAGACCAACCTTCTGGCC
AGGGGGAGCATCACGCCTAACAGTGCTAGCATGACCAATGTGCTGGTGGT
TACCTCCTCCATGAGGATGCTCCACTGGGTTCATGGCCACACCACGCACC
TTAGGCCAGCAGTTTCGCTTCACTCTGAATTTGTGGTATGCATTACCAGC
TTTGAGAAGGGGCTTCTCAGTCCTCCCTCCGCCGGCAACCTGCCCAATCA
TAGCTCTGCAGCCACTTGGAATAATCTTTTTGGCACCAGATGGAAGCTTG
ACCCTGGTGGTGTCATTATCGGGGTTATGACTGATGATAACGGCATAATC
ACCAGAAGCTCTAGCGAGAACACCGCGATCACCAACATGATGCTCAACGT
TGCAAACGACAGCTCCTTCAGGGATAGATCTAACGGGCAACACATTACCA
ACCATCAGAGTGGCTTTCTTGCCGCAGTACACGAACTGA
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