CF832063

Overview
NameCF832063
Unique NameCF832063
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_CAUCN (50S ribosomal protein L2 OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.210e-16
Identity = 51/147 (34.69%), Postives = 75/147 (51.02%), Query Frame = -2
Query:  342 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQK 782
            V   +K  +  GN  P+R++P G ++ N+E      G +AR++G YA ++    D    +++L SG  +++   C A +G V+      + L KAG + H  R      P VRGVAMNPV+HPHGGG     G  S  R    P  K
Sbjct:  116 VVTAEKVDVKPGNASPLRTLPIGTIIHNIELKPAKGGQIARSAGAYAQLVGR--DAGYAQIRLNSGELRMVLDTCMATVGAVSNPDHMNQNLGKAGRSRHMGRR-----PHVRGVAMNPVDHPHGGGE----GRTSGGRHPVTPAGK 251          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_AZOPC (50S ribosomal protein L2 OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=rplB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.210e-16
Identity = 52/135 (38.52%), Postives = 78/135 (57.78%), Query Frame = -2
Query:  384 QFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 788
            Q +  GK+A   VGN LP+  IP G ++ N+E   G    + R++G +A ++S   + +   V++PSG  + + + CRA IG V+    +E  L K+G A  + R   +C P VRGVAMNPV+HP GGG  +  G
Sbjct:  114 QLIVSGKEAPPEVGNSLPLADIPLGTIIHNIELRPGQGAKMVRSAGVFAQVVSR--EGNYVIVRMPSGETRKVLALCRASIGSVS---NSEHALEKSGKA-GRIRWLGHC-PHVRGVAMNPVDHPMGGGEGRASG 241          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_ANAVT (50S ribosomal protein L2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.210e-16
Identity = 53/131 (40.46%), Postives = 72/131 (54.96%), Query Frame = -2
Query:  402 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 782
            +  G ++ +  GN LP+ +IP G  V NVE   G  G + R++G  A +++   + +   +KLPSG  ++I   C A IGQV   G T+   L AG A       RN W    PKVRG  MNPV+HPHGGG
Sbjct:  116 IIAGPESPIEDGNALPLANIPLGTSVHNVELKAGKGGQIVRSAGATAQVVAK--EGNYVTLKLPSGEVRLIRRECYATIGQV---GNTDARNLSAGKA------GRNRWKGRRPKVRGSVMNPVDHPHGGG 235          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_ANASP (50S ribosomal protein L2 OS=Anabaena sp. (strain PCC 7120) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.210e-16
Identity = 53/131 (40.46%), Postives = 72/131 (54.96%), Query Frame = -2
Query:  402 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 782
            +  G ++ +  GN LP+ +IP G  V NVE   G  G + R++G  A +++   + +   +KLPSG  ++I   C A IGQV   G T+   L AG A       RN W    PKVRG  MNPV+HPHGGG
Sbjct:  116 IIAGPESPIEDGNALPLANIPLGTSVHNVELKAGKGGQIVRSAGATAQVVAK--EGNYVTLKLPSGEVRLIRRECYATIGQV---GNTDARNLSAGKA------GRNRWKGRRPKVRGSVMNPVDHPHGGG 235          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_AERS4 (50S ribosomal protein L2 OS=Aeromonas salmonicida (strain A449) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.210e-16
Identity = 56/145 (38.62%), Postives = 81/145 (55.86%), Query Frame = -2
Query:  342 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQK 773
            G  A + VGN LP+R+IP G+ V  VE   G    LAR++G +  I++   +  T R++  SG  + + + CRA IG+V       + L KAG N +   R      P VRG+AMNPV+HPHGGG  ++ G    ++  +P GQK
Sbjct:  119 GADAAIKVGNTLPMRNIPVGSTVHAVEMKPGKGAQLARSAGTFIQILAREGNYVTLRLR--SGEVRKVLAECRATIGEVGNSEHMLRQLGKAGANRWRGIR------PTVRGMAMNPVDHPHGGGEGRNKG----MQPVSPWGQK 251          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_AERHH (50S ribosomal protein L2 OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.210e-16
Identity = 56/145 (38.62%), Postives = 81/145 (55.86%), Query Frame = -2
Query:  342 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQK 773
            G  A + VGN LP+R+IP G+ V  VE   G    LAR++G +  I++   +  T R++  SG  + + + CRA IG+V       + L KAG N +   R      P VRG+AMNPV+HPHGGG  ++ G    ++  +P GQK
Sbjct:  119 GADAAIKVGNTLPMRNIPVGSTVHAVEMKPGKGAQLARSAGTFIQILAREGNYVTLRLR--SGEVRKVLAECRATIGEVGNSEHMLRQLGKAGANRWRGIR------PTVRGMAMNPVDHPHGGGEGRNKG----MQPVSPWGQK 251          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RK2_PIPCE (50S ribosomal protein L2, chloroplastic OS=Piper cenocladum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.210e-16
Identity = 49/131 (37.40%), Postives = 70/131 (53.44%), Query Frame = -2
Query:  402 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 782
            +  G +  + +GN LP+  +P G  + N+E  +   G LARA+G  + +I+    + T R  LPSG  ++I   C A +GQV      +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:  114 IVSGTEVPISMGNALPLTDMPLGTAIHNIEITLEKGGQLARAAGAVSKLIAKEGKSATLR--LPSGEVRLISKNCSATVGQVGNVEVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_SYNP2 (50S ribosomal protein L2 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.111e-16
Identity = 46/127 (36.22%), Postives = 69/127 (54.33%), Query Frame = -2
Query:  402 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 782
            +  G++A   +GN LP+  IP G  + N+E + G  G + R++G +A +++   + D   +KLPS   +++   C A IG+V         L KAG   H  R      P+VRG  MNPV+HPHGGG
Sbjct:  116 IIAGEEAPYEIGNALPLYKIPLGTEIHNIELYAGRGGQMVRSAGAFAQLVA--KEGDYVTIKLPSKEVRMVRKECYATIGKVGNAEARNLKLGKAGRTRHLGR-----RPQVRGSVMNPVDHPHGGG 235          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_RHOPB (50S ribosomal protein L2 OS=Rhodopseudomonas palustris (strain BisB18) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.111e-16
Identity = 49/133 (36.84%), Postives = 72/133 (54.14%), Query Frame = -2
Query:  384 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 782
            V  G    +  GNV+P+ ++P G +V NVE  +G  G +AR++G YA ++    D+D   V+L SG ++++   C A IG V+        + KAG +    R   N     RGV MNPV+HPHGGG  +  G
Sbjct:  116 VLAGAYVDVKPGNVMPLGNMPIGTIVHNVELKIGKGGQIARSAGTYAQLVGR--DHDYVIVRLNSGEQRLVHGRCTATIGAVSNPDHMNISIGKAGRSRWLGRKPHN-----RGVTMNPVDHPHGGGEGRTSG 241          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_RHOP5 (50S ribosomal protein L2 OS=Rhodopseudomonas palustris (strain BisA53) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.111e-16
Identity = 50/134 (37.31%), Postives = 73/134 (54.48%), Query Frame = -2
Query:  384 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW-PKVRGVAMNPVEHPHGGGNHQHIG 782
            V  G    +  GNV+P+ ++P G +V NVE  +G  G +AR++G YA ++    D+D   V+L SG +++I   C A IG V+        + KAG      R +   W P  RGV MNP++HPHGGG  +  G
Sbjct:  116 VIAGAYVDVKPGNVMPLGNMPIGTIVHNVEMKIGKGGQIARSAGTYAQLVGR--DHDYVIVRLNSGEQRLIHGRCTATIGAVSNPDHMNISIGKAG------RTRWLGWRPHNRGVVMNPIDHPHGGGEGRTSG 241          
The following BLAST results are available for this feature:
BLAST of CF832063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_CAUCN6.210e-1634.6950S ribosomal protein L2 OS=Caulobacter crescentus... [more]
RL2_AZOPC6.210e-1638.5250S ribosomal protein L2 OS=Azobacteroides pseudot... [more]
RL2_ANAVT6.210e-1640.4650S ribosomal protein L2 OS=Anabaena variabilis (s... [more]
RL2_ANASP6.210e-1640.4650S ribosomal protein L2 OS=Anabaena sp. (strain P... [more]
RL2_AERS46.210e-1638.6250S ribosomal protein L2 OS=Aeromonas salmonicida ... [more]
RL2_AERHH6.210e-1638.6250S ribosomal protein L2 OS=Aeromonas hydrophila s... [more]
RK2_PIPCE6.210e-1637.4050S ribosomal protein L2, chloroplastic OS=Piper c... [more]
RL2_SYNP28.111e-1636.2250S ribosomal protein L2 OS=Synechococcus sp. (str... [more]
RL2_RHOPB8.111e-1636.8450S ribosomal protein L2 OS=Rhodopseudomonas palus... [more]
RL2_RHOP58.111e-1637.3150S ribosomal protein L2 OS=Rhodopseudomonas palus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01E03_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832063 ID=CF832063; Name=CF832063; organism=Citrus sinensis; type=EST; length=789bp
TTTTTTTTTTTTTTTTTCGAAAAAACAACATTTCCATTTACTCAATTCGA
TGAAGGCATCCATTAATATATCCAAAAATATCAAACTCAACTAAAGTTTT
GGATAAGAGCAAATTAAGCTAAACTTTAAGCCAACATAATTTAACATCAG
GATCATCCCAGAGATCCAAATCTGAACAAATTTTTCCAAGGTAATGATGC
AGCAGGAAAAGTAAAATGACAGATCGCGATAGAGAGACGATTTGTGGTAA
CACAAAGGATTTAAGCCTTGTCGGCCTTGGCTGCAGTGGCAGCAGCTTGT
CCTCTGAGCCGACCAGTCCTCCTGGCTGCAATAAGACCAACCTTCTGGCC
AGGGGGAGCATCACGCCTAACAGTGCTAGCATGACCAATGTGCTGGTGGT
TACCTCCTCCATGAGGATGCTCCACTGGGTTCATGGCCACACCACGCACC
TTAGGCCAGCAGTTTCGCTTCACTCTGAATTTGTGGTATGCATTACCAGC
TTTGAGAAGGGGCTTCTCAGTCCTCCCTCCGCCGGCAACCTGCCCAATCA
TAGCTCTGCAGCCACTTGGAATAATCTTTTTGGCACCAGATGGAAGCTTG
ACCCTGGTGGTGTCATTATCGGGGTTATGACTGATGATAACGGCATAATC
ACCAGAAGCTCTAGCGAGAACACCGCGATCACCAACATGATGCTCAACGT
TGCAAACGACAGCTCCTTCAGGGATAGATCTAACGGGCAACACATTACCA
ACCATCAGAGTGGCTTTCTTGCCGCAGTACACGAACTGA
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