CF832063

Overview
NameCF832063
Unique NameCF832063
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_POLSJ (50S ribosomal protein L2 OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.111e-16
Identity = 50/126 (39.68%), Postives = 73/126 (57.94%), Query Frame = -2
Query:  402 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKR--NCWPKVRGVAMNPVEHPHGGG 773
            G +A + VGN LP+R+IP G+ +  +E  +G    +AR++G  A +++   +    +V++ SG  + I   CRA IG+VA    + + L KAG       VKR     P VRGV MNPV+HPHGGG
Sbjct:  119 GSEAPIRVGNTLPIRNIPVGSTIHCIEMQIGKGAQIARSAGTSATLLAR--EGTYAQVRMRSGEVRKIHIECRATIGEVANEEHSLRRLGKAG-------VKRWMGIRPTVRGVVMNPVDHPHGGG 235          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_MYCPU (50S ribosomal protein L2 OS=Mycoplasma pulmonis GN=rplB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.111e-16
Identity = 53/150 (35.33%), Postives = 77/150 (51.33%), Query Frame = -2
Query:  342 QFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHASTVRRDAPPGQK 788
            Q +  G+   ++VGN L + +IPEG  + N+E      G+LAR++G YA I+          ++L SG  + + + CRA IG V     +   + KAG   HK        P VRG  MNP++HPHGGG   Q IG  + +    P G+K
Sbjct:  115 QRIVSGENVDIIVGNSLELANIPEGTNIHNIELQPKGGGILARSAGSYAQILGKEESGKYVLIRLKSGEVRKVFAKCRATIGIVGNEEHSLVNIGKAGRNRHK-----GIRPTVRGSVMNPIDHPHGGGEGKQPIGRKAPL---TPWGKK 256          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_BART1 (50S ribosomal protein L2 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.111e-16
Identity = 49/133 (36.84%), Postives = 75/133 (56.39%), Query Frame = -2
Query:  384 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 782
            V  G    +  GN +P+ ++P G ++ NVE   G  G +AR++G YA ++    D+    ++L SG ++++ S C A +G V+          KAG +  ++R KR   P VRGVAMNPV+HPHGGG  +  G
Sbjct:  116 VVAGSNVDVKPGNAMPLGNMPVGTIIHNVEMKPGKGGQIARSAGAYAQLVGR--DHGMAILRLNSGEQRLVSSSCFATVGAVSNPDHGNINDGKAGRS--RWRGKR---PHVRGVAMNPVDHPHGGGEGRTSG 241          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_BACWK (50S ribosomal protein L2 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.111e-16
Identity = 52/131 (39.69%), Postives = 72/131 (54.96%), Query Frame = -2
Query:  402 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 782
            V  G ++ + +GN LP+ +IP G VV N+E   G  G L R++G  A ++    +     V+L SG  +++ S CRA IGQV   G  +  L+K G A       R+ W    P VRG  MNPV+HPHGGG
Sbjct:  116 VMSGPESDIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVL--GKEGKYVLVRLTSGEVRLVLSACRASIGQV---GNEQHELIKIGKA------GRSRWLGKRPTVRGSVMNPVDHPHGGG 235          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_AZOC5 (50S ribosomal protein L2 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.111e-16
Identity = 50/137 (36.50%), Postives = 71/137 (51.82%), Query Frame = -2
Query:  384 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIG 782
            V  G++  +  GN  P+ ++P G +V NVE  +G  G +AR++G YA I+    D     V+L SG +++I   C A +G V+        L KAG         R+ W    P  RGV MNPV+HPHGGG  +  G
Sbjct:  116 VIAGEQVDVKPGNAAPLSNLPVGTIVHNVEMKIGKGGQIARSAGSYAQIVGR--DQGYVIVRLNSGEQRLIHGACYATVGAVSNPDHMNTSLGKAG---------RSRWLGVKPHNRGVTMNPVDHPHGGGEGRTSG 241          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_ACIAD (50S ribosomal protein L2 OS=Acinetobacter sp. (strain ADP1) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.111e-16
Identity = 55/147 (37.41%), Postives = 80/147 (54.42%), Query Frame = -2
Query:  342 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQK 782
            V  G  A +  GN LP+R++P G+ + NVE  +G    LAR++G    ++    D     V+L SG  + I   CRA+IG+V+      + L KAG +       R   P VRG+AMNPV+HPHGGG  ++ G    ++  +P GQK
Sbjct:  116 VQSGNDAPIRPGNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGTSVQLLGR--DGSYAIVRLRSGEMRKIHVECRAVIGEVSNQENNLRSLGKAGASRW-----RGVRPTVRGMAMNPVDHPHGGGEGRNKG----IQPVSPWGQK 251          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RK2_ANGEV (50S ribosomal protein L2, chloroplastic OS=Angiopteris evecta GN=rpl2 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.111e-16
Identity = 50/127 (39.37%), Postives = 70/127 (55.12%), Query Frame = -2
Query:  402 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 782
            +  G +A +  GN LP+  +P G  + NVE   G  G LARA+G  A +I+   +     ++ PSG  ++I   C A +GQ+       K   KAG+   ++  KR   PKVRGV MNPV+HPHGGG
Sbjct:  116 IVSGSEAPISRGNALPLSKMPLGTTIHNVEITPGKGGQLARAAGAVAKLIAK--EGRLATLRSPSGEVRLISQDCLATVGQIGNADINNKNFGKAGSK--RWLGKR---PKVRGVVMNPVDHPHGGG 235          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_SYNJB (50S ribosomal protein L2 OS=Synechococcus sp. GN=rplB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.059e-15
Identity = 50/127 (39.37%), Postives = 71/127 (55.91%), Query Frame = -2
Query:  402 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 782
            +  G +A   +GN +P+  IP G VV NVE + G  G + RA+G  A +++   +     +KLPSG  ++I   C A IGQ+         L KAG +  ++  +R   PKVRG  MNPV+HPHGGG
Sbjct:  122 IMAGPEAPFEIGNAMPLERIPLGTVVHNVELYPGRGGQMVRAAGAGAQVVAR--EGKYVSLKLPSGEVRMIRGECYATIGQLGNVDHNNISLGKAGRS--RWLGRR---PKVRGSVMNPVDHPHGGG 241          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_PSEA6 (50S ribosomal protein L2 OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.059e-15
Identity = 51/134 (38.06%), Postives = 72/134 (53.73%), Query Frame = -2
Query:  384 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 782
            +  G  A +  GN LP+R+IP G  V  +E   G    +AR++G YA I++      T R++  SG  + + + CRA IG++       + L KAG N +   R      P VRGVAMNPV+HPHGGG  +  G
Sbjct:  116 IQSGSDAAIKAGNSLPMRNIPVGTTVHAIEMKPGKGAQIARSAGQYAQILARAEGYVTLRLR--SGEVRRVLADCRATIGEIGNAEHMLRSLGKAGANRWRGIR------PTVRGVAMNPVDHPHGGGEGRTSG 241          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_NEIMF (50S ribosomal protein L2 OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.059e-15
Identity = 50/125 (40.00%), Postives = 72/125 (57.60%), Query Frame = -2
Query:  402 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 773
            G +A + VGN LP+R+IP G  +  +E   G    +AR++G  AV+++   +    +V+L SG  + I   CRA IG+V    ++ K + KAG N +   R      P VRGV MNPV+HPHGGG
Sbjct:  119 GAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLA--KEGAYAQVRLRSGEVRKINVNCRATIGEVGNEEQSLKKIGKAGANRWRGIR------PTVRGVVMNPVDHPHGGG 235          
The following BLAST results are available for this feature:
BLAST of CF832063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_POLSJ8.111e-1639.6850S ribosomal protein L2 OS=Polaromonas sp. (strai... [more]
RL2_MYCPU8.111e-1635.3350S ribosomal protein L2 OS=Mycoplasma pulmonis GN... [more]
RL2_BART18.111e-1636.8450S ribosomal protein L2 OS=Bartonella tribocorum ... [more]
RL2_BACWK8.111e-1639.6950S ribosomal protein L2 OS=Bacillus weihenstephan... [more]
RL2_AZOC58.111e-1636.5050S ribosomal protein L2 OS=Azorhizobium caulinoda... [more]
RL2_ACIAD8.111e-1637.4150S ribosomal protein L2 OS=Acinetobacter sp. (str... [more]
RK2_ANGEV8.111e-1639.3750S ribosomal protein L2, chloroplastic OS=Angiopt... [more]
RL2_SYNJB1.059e-1539.3750S ribosomal protein L2 OS=Synechococcus sp. GN=r... [more]
RL2_PSEA61.059e-1538.0650S ribosomal protein L2 OS=Pseudoalteromonas atla... [more]
RL2_NEIMF1.059e-1540.0050S ribosomal protein L2 OS=Neisseria meningitidis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01E03_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832063 ID=CF832063; Name=CF832063; organism=Citrus sinensis; type=EST; length=789bp
TTTTTTTTTTTTTTTTTCGAAAAAACAACATTTCCATTTACTCAATTCGA
TGAAGGCATCCATTAATATATCCAAAAATATCAAACTCAACTAAAGTTTT
GGATAAGAGCAAATTAAGCTAAACTTTAAGCCAACATAATTTAACATCAG
GATCATCCCAGAGATCCAAATCTGAACAAATTTTTCCAAGGTAATGATGC
AGCAGGAAAAGTAAAATGACAGATCGCGATAGAGAGACGATTTGTGGTAA
CACAAAGGATTTAAGCCTTGTCGGCCTTGGCTGCAGTGGCAGCAGCTTGT
CCTCTGAGCCGACCAGTCCTCCTGGCTGCAATAAGACCAACCTTCTGGCC
AGGGGGAGCATCACGCCTAACAGTGCTAGCATGACCAATGTGCTGGTGGT
TACCTCCTCCATGAGGATGCTCCACTGGGTTCATGGCCACACCACGCACC
TTAGGCCAGCAGTTTCGCTTCACTCTGAATTTGTGGTATGCATTACCAGC
TTTGAGAAGGGGCTTCTCAGTCCTCCCTCCGCCGGCAACCTGCCCAATCA
TAGCTCTGCAGCCACTTGGAATAATCTTTTTGGCACCAGATGGAAGCTTG
ACCCTGGTGGTGTCATTATCGGGGTTATGACTGATGATAACGGCATAATC
ACCAGAAGCTCTAGCGAGAACACCGCGATCACCAACATGATGCTCAACGT
TGCAAACGACAGCTCCTTCAGGGATAGATCTAACGGGCAACACATTACCA
ACCATCAGAGTGGCTTTCTTGCCGCAGTACACGAACTGA
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