CF832063

Overview
NameCF832063
Unique NameCF832063
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_BACC1 (50S ribosomal protein L2 OS=Bacillus cereus (strain ATCC 10987) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.059e-15
Identity = 51/131 (38.93%), Postives = 71/131 (54.20%), Query Frame = -2
Query:  402 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 782
            +  G +A + +GN LP+ +IP G VV N+E   G  G L R++G  A ++    +     V+L SG  +++ S CRA +GQV   G     L+K G A       R+ W    P VRG  MNPV+HPHGGG
Sbjct:  116 IMSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVL--GKEGKYVLVRLTSGEVRLVLSACRATVGQV---GNESHELIKIGKA------GRSRWLGKRPTVRGSVMNPVDHPHGGG 235          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_BACC0 (50S ribosomal protein L2 OS=Bacillus cereus (strain AH820) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.059e-15
Identity = 51/131 (38.93%), Postives = 71/131 (54.20%), Query Frame = -2
Query:  402 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 782
            +  G +A + +GN LP+ +IP G VV N+E   G  G L R++G  A ++    +     V+L SG  +++ S CRA +GQV   G     L+K G A       R+ W    P VRG  MNPV+HPHGGG
Sbjct:  116 IMSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVL--GKEGKYVLVRLTSGEVRLVLSACRATVGQV---GNESHELIKIGKA------GRSRWLGKRPTVRGSVMNPVDHPHGGG 235          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_BACAN (50S ribosomal protein L2 OS=Bacillus anthracis GN=rplB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.059e-15
Identity = 51/131 (38.93%), Postives = 71/131 (54.20%), Query Frame = -2
Query:  402 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 782
            +  G +A + +GN LP+ +IP G VV N+E   G  G L R++G  A ++    +     V+L SG  +++ S CRA +GQV   G     L+K G A       R+ W    P VRG  MNPV+HPHGGG
Sbjct:  116 IMSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVL--GKEGKYVLVRLTSGEVRLVLSACRATVGQV---GNESHELIKIGKA------GRSRWLGKRPTVRGSVMNPVDHPHGGG 235          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_BACAH (50S ribosomal protein L2 OS=Bacillus thuringiensis (strain Al Hakam) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.059e-15
Identity = 51/131 (38.93%), Postives = 71/131 (54.20%), Query Frame = -2
Query:  402 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 782
            +  G +A + +GN LP+ +IP G VV N+E   G  G L R++G  A ++    +     V+L SG  +++ S CRA +GQV   G     L+K G A       R+ W    P VRG  MNPV+HPHGGG
Sbjct:  116 IMSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVL--GKEGKYVLVRLTSGEVRLVLSACRATVGQV---GNESHELIKIGKA------GRSRWLGKRPTVRGSVMNPVDHPHGGG 235          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_BACAC (50S ribosomal protein L2 OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.059e-15
Identity = 51/131 (38.93%), Postives = 71/131 (54.20%), Query Frame = -2
Query:  402 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 782
            +  G +A + +GN LP+ +IP G VV N+E   G  G L R++G  A ++    +     V+L SG  +++ S CRA +GQV   G     L+K G A       R+ W    P VRG  MNPV+HPHGGG
Sbjct:  116 IMSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVL--GKEGKYVLVRLTSGEVRLVLSACRATVGQV---GNESHELIKIGKA------GRSRWLGKRPTVRGSVMNPVDHPHGGG 235          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_BACAA (50S ribosomal protein L2 OS=Bacillus anthracis (strain A0248) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.059e-15
Identity = 51/131 (38.93%), Postives = 71/131 (54.20%), Query Frame = -2
Query:  402 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 782
            +  G +A + +GN LP+ +IP G VV N+E   G  G L R++G  A ++    +     V+L SG  +++ S CRA +GQV   G     L+K G A       R+ W    P VRG  MNPV+HPHGGG
Sbjct:  116 IMSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVL--GKEGKYVLVRLTSGEVRLVLSACRATVGQV---GNESHELIKIGKA------GRSRWLGKRPTVRGSVMNPVDHPHGGG 235          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_ALKMQ (50S ribosomal protein L2 OS=Alkaliphilus metalliredigens (strain QYMF) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.059e-15
Identity = 52/141 (36.88%), Postives = 76/141 (53.90%), Query Frame = -2
Query:  369 QFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHASTV 788
            + ++ G ++ + VGN LP+ +IP G ++ N+E   G  G +AR++G+ A +++   +     V+LPSG  + I   CRA IGQV         + KAG      + K    P VRG AMNP +HPHGGG     IG  S V
Sbjct:  114 EMIFSGPESDIKVGNALPLINIPVGTIIHNIEMKPGKGGQIARSAGNSAQLMA--KEGRYALVRLPSGEVRQILIECRATIGQVGNLDHENVTIGKAGR-----KRKMGIRPTVRGSAMNPNDHPHGGGEGRSPIGRPSPV 247          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_ACIF5 (50S ribosomal protein L2 OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.059e-15
Identity = 51/133 (38.35%), Postives = 72/133 (54.14%), Query Frame = -2
Query:  384 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 782
            V   ++  +  GN +P+R IP G+VV NVE   G  G +AR++G    +++   + D  +++L SG  + I   CRA IG+V       + L KAG         R   P VRGVAMNPV+HPHGGG  +  G
Sbjct:  116 VLSAEQTPIKPGNCMPLRGIPVGSVVHNVEMRPGKGGQIARSAGASVQLMAR--EGDYAQLRLRSGEVRRIHVSCRATIGEVGNEEHGSRQLGKAGATRW-----RGVRPTVRGVAMNPVDHPHGGGEGRTSG 241          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_ACIF2 (50S ribosomal protein L2 OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.059e-15
Identity = 51/133 (38.35%), Postives = 72/133 (54.14%), Query Frame = -2
Query:  384 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 782
            V   ++  +  GN +P+R IP G+VV NVE   G  G +AR++G    +++   + D  +++L SG  + I   CRA IG+V       + L KAG         R   P VRGVAMNPV+HPHGGG  +  G
Sbjct:  116 VLSAEQTPIKPGNCMPLRGIPVGSVVHNVEMRPGKGGQIARSAGASVQLMAR--EGDYAQLRLRSGEVRRIHVSCRATIGEVGNEEHGSRQLGKAGATRW-----RGVRPTVRGVAMNPVDHPHGGGEGRTSG 241          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_ACIBY (50S ribosomal protein L2 OS=Acinetobacter baumannii (strain AYE) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.059e-15
Identity = 53/147 (36.05%), Postives = 80/147 (54.42%), Query Frame = -2
Query:  342 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQK 782
            V  G  A +  GN LP+R++P G+ + NVE  +G    LAR++G    ++    D     ++L SG  + +   CRA+IG+V+      + L KAG A       R   P VRG+AMNP++HPHGGG  ++ G    ++  +P GQK
Sbjct:  116 VQSGNDAPIRPGNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGASVQLLGR--DGSYAIIRLRSGEMRKVHVECRAVIGEVSNQENNLRSLGKAGAARW-----RGVRPTVRGMAMNPIDHPHGGGEGRNKG----IQPVSPWGQK 251          
The following BLAST results are available for this feature:
BLAST of CF832063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_BACC11.059e-1538.9350S ribosomal protein L2 OS=Bacillus cereus (strai... [more]
RL2_BACC01.059e-1538.9350S ribosomal protein L2 OS=Bacillus cereus (strai... [more]
RL2_BACAN1.059e-1538.9350S ribosomal protein L2 OS=Bacillus anthracis GN=... [more]
RL2_BACAH1.059e-1538.9350S ribosomal protein L2 OS=Bacillus thuringiensis... [more]
RL2_BACAC1.059e-1538.9350S ribosomal protein L2 OS=Bacillus anthracis (st... [more]
RL2_BACAA1.059e-1538.9350S ribosomal protein L2 OS=Bacillus anthracis (st... [more]
RL2_ALKMQ1.059e-1536.8850S ribosomal protein L2 OS=Alkaliphilus metallire... [more]
RL2_ACIF51.059e-1538.3550S ribosomal protein L2 OS=Acidithiobacillus ferr... [more]
RL2_ACIF21.059e-1538.3550S ribosomal protein L2 OS=Acidithiobacillus ferr... [more]
RL2_ACIBY1.059e-1536.0550S ribosomal protein L2 OS=Acinetobacter baumanni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01E03_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832063 ID=CF832063; Name=CF832063; organism=Citrus sinensis; type=EST; length=789bp
TTTTTTTTTTTTTTTTTCGAAAAAACAACATTTCCATTTACTCAATTCGA
TGAAGGCATCCATTAATATATCCAAAAATATCAAACTCAACTAAAGTTTT
GGATAAGAGCAAATTAAGCTAAACTTTAAGCCAACATAATTTAACATCAG
GATCATCCCAGAGATCCAAATCTGAACAAATTTTTCCAAGGTAATGATGC
AGCAGGAAAAGTAAAATGACAGATCGCGATAGAGAGACGATTTGTGGTAA
CACAAAGGATTTAAGCCTTGTCGGCCTTGGCTGCAGTGGCAGCAGCTTGT
CCTCTGAGCCGACCAGTCCTCCTGGCTGCAATAAGACCAACCTTCTGGCC
AGGGGGAGCATCACGCCTAACAGTGCTAGCATGACCAATGTGCTGGTGGT
TACCTCCTCCATGAGGATGCTCCACTGGGTTCATGGCCACACCACGCACC
TTAGGCCAGCAGTTTCGCTTCACTCTGAATTTGTGGTATGCATTACCAGC
TTTGAGAAGGGGCTTCTCAGTCCTCCCTCCGCCGGCAACCTGCCCAATCA
TAGCTCTGCAGCCACTTGGAATAATCTTTTTGGCACCAGATGGAAGCTTG
ACCCTGGTGGTGTCATTATCGGGGTTATGACTGATGATAACGGCATAATC
ACCAGAAGCTCTAGCGAGAACACCGCGATCACCAACATGATGCTCAACGT
TGCAAACGACAGCTCCTTCAGGGATAGATCTAACGGGCAACACATTACCA
ACCATCAGAGTGGCTTTCTTGCCGCAGTACACGAACTGA
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