CF832063

Overview
NameCF832063
Unique NameCF832063
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11638 contig Csv1_Contig11638:326..1114. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_ACIBT (50S ribosomal protein L2 OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=rplB PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.059e-15
Identity = 53/147 (36.05%), Postives = 80/147 (54.42%), Query Frame = -2
Query:  342 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQK 782
            V  G  A +  GN LP+R++P G+ + NVE  +G    LAR++G    ++    D     ++L SG  + +   CRA+IG+V+      + L KAG A       R   P VRG+AMNP++HPHGGG  ++ G    ++  +P GQK
Sbjct:  116 VQSGNDAPIRPGNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGASVQLLGR--DGSYAIIRLRSGEMRKVHVECRAVIGEVSNQENNLRSLGKAGAARW-----RGVRPTVRGMAMNPIDHPHGGGEGRNKG----IQPVSPWGQK 251          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_ACIBS (50S ribosomal protein L2 OS=Acinetobacter baumannii (strain SDF) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.059e-15
Identity = 53/147 (36.05%), Postives = 80/147 (54.42%), Query Frame = -2
Query:  342 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQK 782
            V  G  A +  GN LP+R++P G+ + NVE  +G    LAR++G    ++    D     ++L SG  + +   CRA+IG+V+      + L KAG A       R   P VRG+AMNP++HPHGGG  ++ G    ++  +P GQK
Sbjct:  116 VQSGNDAPIRPGNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGASVQLLGR--DGSYAIIRLRSGEMRKVHVECRAVIGEVSNQENNLRSLGKAGAARW-----RGVRPTVRGMAMNPIDHPHGGGEGRNKG----IQPVSPWGQK 251          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_ACIB5 (50S ribosomal protein L2 OS=Acinetobacter baumannii (strain AB0057) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.059e-15
Identity = 53/147 (36.05%), Postives = 80/147 (54.42%), Query Frame = -2
Query:  342 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQK 782
            V  G  A +  GN LP+R++P G+ + NVE  +G    LAR++G    ++    D     ++L SG  + +   CRA+IG+V+      + L KAG A       R   P VRG+AMNP++HPHGGG  ++ G    ++  +P GQK
Sbjct:  116 VQSGNDAPIRPGNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGASVQLLGR--DGSYAIIRLRSGEMRKVHVECRAVIGEVSNQENNLRSLGKAGAARW-----RGVRPTVRGMAMNPIDHPHGGGEGRNKG----IQPVSPWGQK 251          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_ACIB3 (50S ribosomal protein L2 OS=Acinetobacter baumannii (strain AB307-0294) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.059e-15
Identity = 53/147 (36.05%), Postives = 80/147 (54.42%), Query Frame = -2
Query:  342 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQK 782
            V  G  A +  GN LP+R++P G+ + NVE  +G    LAR++G    ++    D     ++L SG  + +   CRA+IG+V+      + L KAG A       R   P VRG+AMNP++HPHGGG  ++ G    ++  +P GQK
Sbjct:  116 VQSGNDAPIRPGNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGASVQLLGR--DGSYAIIRLRSGEMRKVHVECRAVIGEVSNQENNLRSLGKAGAARW-----RGVRPTVRGMAMNPIDHPHGGGEGRNKG----IQPVSPWGQK 251          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RK2_PSEAK (50S ribosomal protein L2, chloroplastic OS=Pseudendoclonium akinetum GN=rpl2 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.059e-15
Identity = 50/127 (39.37%), Postives = 73/127 (57.48%), Query Frame = -2
Query:  402 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 782
            V    +A +++GN LP+++IP G  V NVE + G  G L+RA+G  A I++   +     ++LPSG  +++   C A IGQV   G  +   ++ G A     + R   PKVRGV MNP +HPHGGG
Sbjct:  116 VVTSPEAPILIGNCLPLKAIPLGTEVHNVELYSGMGGQLSRAAGSSAQIVA--KEGRFVTLRLPSGEVRLVSQNCWATIGQV---GNVDANNIRIGKAGRMRWLGRR--PKVRGVVMNPNDHPHGGG 235          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_THISH (50S ribosomal protein L2 OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.384e-15
Identity = 50/134 (37.31%), Postives = 73/134 (54.48%), Query Frame = -2
Query:  384 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIG 773
            G  A +  GN LP+R+IP G VV  +E   G    +AR++G    +++    + T R++  SG  + +P+ CRA IG+V+    + +   KAG        KR  W    P VRG AMNPV+HPHGGG  ++ G
Sbjct:  119 GTNAPIRAGNTLPLRNIPVGTVVHCIEMKPGKGAQMARSAGAAVQLVAREGQHATLRLR--SGEMRKVPADCRATIGEVSNSEHSLRKFGKAG-------AKR--WLGIRPTVRGTAMNPVDHPHGGGEGRNFG 241          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_THEM4 (50S ribosomal protein L2 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.384e-15
Identity = 50/131 (38.17%), Postives = 70/131 (53.44%), Query Frame = -2
Query:  381 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGH 773
            G  A +  GN LP+ +IP G V+ NVE+  G  G +AR++G    +++   +     +++PSG  + +P  C A IG V       +   KAG    K R      P VRGVAMNPV+HPHGGG  +  GH
Sbjct:  119 GPDAEIKPGNALPLENIPVGTVIHNVEYIPGKGGQIARSAGTSCQLMAK--EGKYALLRMPSGELRKVPVKCYATIGVVGNEDHKNEVDGKAGRVRWKGRK-----PHVRGVAMNPVDHPHGGGEGRGKGH 242          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_STAAW (50S ribosomal protein L2 OS=Staphylococcus aureus (strain MW2) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.384e-15
Identity = 53/133 (39.85%), Postives = 73/133 (54.89%), Query Frame = -2
Query:  402 QFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 788
            Q V  G +A + VGN LP+++IP G VV N+E   G  G +AR++G  A ++    +     ++L SG  ++I S CRA IGQV   G  +  L+  G A       R+ W    P VRG  MNP +HPHGGG
Sbjct:  114 QIVESGAEADIKVGNALPLQNIPVGTVVHNIELKPGKGGQIARSAGASAQVL--GKEGKYVLIRLRSGEVRMILSTCRATIGQV---GNLQHELVNVGKA------GRSRWKGIRPTVRGSVMNPNDHPHGGG 235          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_STAAS (50S ribosomal protein L2 OS=Staphylococcus aureus (strain MSSA476) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.384e-15
Identity = 53/133 (39.85%), Postives = 73/133 (54.89%), Query Frame = -2
Query:  402 QFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 788
            Q V  G +A + VGN LP+++IP G VV N+E   G  G +AR++G  A ++    +     ++L SG  ++I S CRA IGQV   G  +  L+  G A       R+ W    P VRG  MNP +HPHGGG
Sbjct:  114 QIVESGAEADIKVGNALPLQNIPVGTVVHNIELKPGKGGQIARSAGASAQVL--GKEGKYVLIRLRSGEVRMILSTCRATIGQV---GNLQHELVNVGKA------GRSRWKGIRPTVRGSVMNPNDHPHGGG 235          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_STAAR (50S ribosomal protein L2 OS=Staphylococcus aureus (strain MRSA252) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.384e-15
Identity = 53/133 (39.85%), Postives = 73/133 (54.89%), Query Frame = -2
Query:  402 QFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 788
            Q V  G +A + VGN LP+++IP G VV N+E   G  G +AR++G  A ++    +     ++L SG  ++I S CRA IGQV   G  +  L+  G A       R+ W    P VRG  MNP +HPHGGG
Sbjct:  114 QIVESGAEADIKVGNALPLQNIPVGTVVHNIELKPGKGGQIARSAGASAQVL--GKEGKYVLIRLRSGEVRMILSTCRATIGQV---GNLQHELVNVGKA------GRSRWKGIRPTVRGSVMNPNDHPHGGG 235          
The following BLAST results are available for this feature:
BLAST of CF832063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_ACIBT1.059e-1536.0550S ribosomal protein L2 OS=Acinetobacter baumanni... [more]
RL2_ACIBS1.059e-1536.0550S ribosomal protein L2 OS=Acinetobacter baumanni... [more]
RL2_ACIB51.059e-1536.0550S ribosomal protein L2 OS=Acinetobacter baumanni... [more]
RL2_ACIB31.059e-1536.0550S ribosomal protein L2 OS=Acinetobacter baumanni... [more]
RK2_PSEAK1.059e-1539.3750S ribosomal protein L2, chloroplastic OS=Pseuden... [more]
RL2_THISH1.384e-1537.3150S ribosomal protein L2 OS=Thioalkalivibrio sp. (... [more]
RL2_THEM41.384e-1538.1750S ribosomal protein L2 OS=Thermosipho melanesien... [more]
RL2_STAAW1.384e-1539.8550S ribosomal protein L2 OS=Staphylococcus aureus ... [more]
RL2_STAAS1.384e-1539.8550S ribosomal protein L2 OS=Staphylococcus aureus ... [more]
RL2_STAAR1.384e-1539.8550S ribosomal protein L2 OS=Staphylococcus aureus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01E03_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832063 ID=CF832063; Name=CF832063; organism=Citrus sinensis; type=EST; length=789bp
TTTTTTTTTTTTTTTTTCGAAAAAACAACATTTCCATTTACTCAATTCGA
TGAAGGCATCCATTAATATATCCAAAAATATCAAACTCAACTAAAGTTTT
GGATAAGAGCAAATTAAGCTAAACTTTAAGCCAACATAATTTAACATCAG
GATCATCCCAGAGATCCAAATCTGAACAAATTTTTCCAAGGTAATGATGC
AGCAGGAAAAGTAAAATGACAGATCGCGATAGAGAGACGATTTGTGGTAA
CACAAAGGATTTAAGCCTTGTCGGCCTTGGCTGCAGTGGCAGCAGCTTGT
CCTCTGAGCCGACCAGTCCTCCTGGCTGCAATAAGACCAACCTTCTGGCC
AGGGGGAGCATCACGCCTAACAGTGCTAGCATGACCAATGTGCTGGTGGT
TACCTCCTCCATGAGGATGCTCCACTGGGTTCATGGCCACACCACGCACC
TTAGGCCAGCAGTTTCGCTTCACTCTGAATTTGTGGTATGCATTACCAGC
TTTGAGAAGGGGCTTCTCAGTCCTCCCTCCGCCGGCAACCTGCCCAATCA
TAGCTCTGCAGCCACTTGGAATAATCTTTTTGGCACCAGATGGAAGCTTG
ACCCTGGTGGTGTCATTATCGGGGTTATGACTGATGATAACGGCATAATC
ACCAGAAGCTCTAGCGAGAACACCGCGATCACCAACATGATGCTCAACGT
TGCAAACGACAGCTCCTTCAGGGATAGATCTAACGGGCAACACATTACCA
ACCATCAGAGTGGCTTTCTTGCCGCAGTACACGAACTGA
back to top