CF832063
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_ACIBT (50S ribosomal protein L2 OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=rplB PE=3 SV=2) HSP 1 Score: 83.9593 bits (206), Expect = 1.059e-15 Identity = 53/147 (36.05%), Postives = 80/147 (54.42%), Query Frame = -2 Query: 342 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQK 782 V G A + GN LP+R++P G+ + NVE +G LAR++G ++ D ++L SG + + CRA+IG+V+ + L KAG A R P VRG+AMNP++HPHGGG ++ G ++ +P GQK Sbjct: 116 VQSGNDAPIRPGNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGASVQLLGR--DGSYAIIRLRSGEMRKVHVECRAVIGEVSNQENNLRSLGKAGAARW-----RGVRPTVRGMAMNPIDHPHGGGEGRNKG----IQPVSPWGQK 251
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_ACIBS (50S ribosomal protein L2 OS=Acinetobacter baumannii (strain SDF) GN=rplB PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.059e-15 Identity = 53/147 (36.05%), Postives = 80/147 (54.42%), Query Frame = -2 Query: 342 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQK 782 V G A + GN LP+R++P G+ + NVE +G LAR++G ++ D ++L SG + + CRA+IG+V+ + L KAG A R P VRG+AMNP++HPHGGG ++ G ++ +P GQK Sbjct: 116 VQSGNDAPIRPGNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGASVQLLGR--DGSYAIIRLRSGEMRKVHVECRAVIGEVSNQENNLRSLGKAGAARW-----RGVRPTVRGMAMNPIDHPHGGGEGRNKG----IQPVSPWGQK 251
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_ACIB5 (50S ribosomal protein L2 OS=Acinetobacter baumannii (strain AB0057) GN=rplB PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.059e-15 Identity = 53/147 (36.05%), Postives = 80/147 (54.42%), Query Frame = -2 Query: 342 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQK 782 V G A + GN LP+R++P G+ + NVE +G LAR++G ++ D ++L SG + + CRA+IG+V+ + L KAG A R P VRG+AMNP++HPHGGG ++ G ++ +P GQK Sbjct: 116 VQSGNDAPIRPGNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGASVQLLGR--DGSYAIIRLRSGEMRKVHVECRAVIGEVSNQENNLRSLGKAGAARW-----RGVRPTVRGMAMNPIDHPHGGGEGRNKG----IQPVSPWGQK 251
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_ACIB3 (50S ribosomal protein L2 OS=Acinetobacter baumannii (strain AB307-0294) GN=rplB PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.059e-15 Identity = 53/147 (36.05%), Postives = 80/147 (54.42%), Query Frame = -2 Query: 342 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQK 782 V G A + GN LP+R++P G+ + NVE +G LAR++G ++ D ++L SG + + CRA+IG+V+ + L KAG A R P VRG+AMNP++HPHGGG ++ G ++ +P GQK Sbjct: 116 VQSGNDAPIRPGNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGASVQLLGR--DGSYAIIRLRSGEMRKVHVECRAVIGEVSNQENNLRSLGKAGAARW-----RGVRPTVRGMAMNPIDHPHGGGEGRNKG----IQPVSPWGQK 251
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RK2_PSEAK (50S ribosomal protein L2, chloroplastic OS=Pseudendoclonium akinetum GN=rpl2 PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.059e-15 Identity = 50/127 (39.37%), Postives = 73/127 (57.48%), Query Frame = -2 Query: 402 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 782 V +A +++GN LP+++IP G V NVE + G G L+RA+G A I++ + ++LPSG +++ C A IGQV G + ++ G A + R PKVRGV MNP +HPHGGG Sbjct: 116 VVTSPEAPILIGNCLPLKAIPLGTEVHNVELYSGMGGQLSRAAGSSAQIVA--KEGRFVTLRLPSGEVRLVSQNCWATIGQV---GNVDANNIRIGKAGRMRWLGRR--PKVRGVVMNPNDHPHGGG 235
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_THISH (50S ribosomal protein L2 OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=rplB PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.384e-15 Identity = 50/134 (37.31%), Postives = 73/134 (54.48%), Query Frame = -2 Query: 384 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIG 773 G A + GN LP+R+IP G VV +E G +AR++G +++ + T R++ SG + +P+ CRA IG+V+ + + KAG KR W P VRG AMNPV+HPHGGG ++ G Sbjct: 119 GTNAPIRAGNTLPLRNIPVGTVVHCIEMKPGKGAQMARSAGAAVQLVAREGQHATLRLR--SGEMRKVPADCRATIGEVSNSEHSLRKFGKAG-------AKR--WLGIRPTVRGTAMNPVDHPHGGGEGRNFG 241
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_THEM4 (50S ribosomal protein L2 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rplB PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.384e-15 Identity = 50/131 (38.17%), Postives = 70/131 (53.44%), Query Frame = -2 Query: 381 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGH 773 G A + GN LP+ +IP G V+ NVE+ G G +AR++G +++ + +++PSG + +P C A IG V + KAG K R P VRGVAMNPV+HPHGGG + GH Sbjct: 119 GPDAEIKPGNALPLENIPVGTVIHNVEYIPGKGGQIARSAGTSCQLMAK--EGKYALLRMPSGELRKVPVKCYATIGVVGNEDHKNEVDGKAGRVRWKGRK-----PHVRGVAMNPVDHPHGGGEGRGKGH 242
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_STAAW (50S ribosomal protein L2 OS=Staphylococcus aureus (strain MW2) GN=rplB PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.384e-15 Identity = 53/133 (39.85%), Postives = 73/133 (54.89%), Query Frame = -2 Query: 402 QFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 788 Q V G +A + VGN LP+++IP G VV N+E G G +AR++G A ++ + ++L SG ++I S CRA IGQV G + L+ G A R+ W P VRG MNP +HPHGGG Sbjct: 114 QIVESGAEADIKVGNALPLQNIPVGTVVHNIELKPGKGGQIARSAGASAQVL--GKEGKYVLIRLRSGEVRMILSTCRATIGQV---GNLQHELVNVGKA------GRSRWKGIRPTVRGSVMNPNDHPHGGG 235
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_STAAS (50S ribosomal protein L2 OS=Staphylococcus aureus (strain MSSA476) GN=rplB PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.384e-15 Identity = 53/133 (39.85%), Postives = 73/133 (54.89%), Query Frame = -2 Query: 402 QFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 788 Q V G +A + VGN LP+++IP G VV N+E G G +AR++G A ++ + ++L SG ++I S CRA IGQV G + L+ G A R+ W P VRG MNP +HPHGGG Sbjct: 114 QIVESGAEADIKVGNALPLQNIPVGTVVHNIELKPGKGGQIARSAGASAQVL--GKEGKYVLIRLRSGEVRMILSTCRATIGQV---GNLQHELVNVGKA------GRSRWKGIRPTVRGSVMNPNDHPHGGG 235
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_STAAR (50S ribosomal protein L2 OS=Staphylococcus aureus (strain MRSA252) GN=rplB PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.384e-15 Identity = 53/133 (39.85%), Postives = 73/133 (54.89%), Query Frame = -2 Query: 402 QFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 788 Q V G +A + VGN LP+++IP G VV N+E G G +AR++G A ++ + ++L SG ++I S CRA IGQV G + L+ G A R+ W P VRG MNP +HPHGGG Sbjct: 114 QIVESGAEADIKVGNALPLQNIPVGTVVHNIELKPGKGGQIARSAGASAQVL--GKEGKYVLIRLRSGEVRMILSTCRATIGQV---GNLQHELVNVGKA------GRSRWKGIRPTVRGSVMNPNDHPHGGG 235 The following BLAST results are available for this feature:
BLAST of CF832063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832063 ID=CF832063; Name=CF832063; organism=Citrus sinensis; type=EST; length=789bpback to top |