CF832071

Overview
NameCF832071
Unique NameCF832071
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length788
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10238 contig Csv1_Contig10238:1112..1899. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832071 vs. ExPASy Swiss-Prot
Match: GSK3_DICDI (Glycogen synthase kinase-3 OS=Dictyostelium discoideum GN=gskA PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.691e-13
Identity = 36/67 (53.73%), Postives = 43/67 (64.18%), Query Frame = -2 
Query:  587 YSPSLRCTALEACAHPFFDELREPNARLPNGRPLPPLFNFK-QELSGASPELVNKLIPDHVKRQLGL 784
            Y PS R   +E CAHPFFDELR+P   LP+G+PLPPLFNF   E +   P+L   LIP H   Q+ L
Sbjct:  322 YDPSSRLKPVEICAHPFFDELRDPKTCLPDGKPLPPLFNFTIAEQTSIGPKLAKTLIPSHAMNQIEL 388
[Close]
BLAST of CF832071 vs. ExPASy Swiss-Prot
Match: GSK3A_MOUSE (Glycogen synthase kinase-3 alpha OS=Mus musculus GN=Gsk3a PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.096e-12
Identity = 36/66 (54.55%), Postives = 42/66 (63.64%), Query Frame = -2 
Query:  590 QYSPSLRCTALEACAHPFFDELREPNARLPNGRPLPPLFNFKQELSGASPELVNKLIPDHVKRQLG 787
            +Y+PS R + LEACAH FFDELR   A+LPN RPLPPLFNF        P L   LIP H++   G
Sbjct:  386 EYTPSSRLSPLEACAHSFFDELRRLGAQLPNDRPLPPLFNFSPGELSIQPSLNAILIPPHLRSPAG 451
[Close]
BLAST of CF832071 vs. ExPASy Swiss-Prot
Match: GSK3A_HUMAN (Glycogen synthase kinase-3 alpha OS=Homo sapiens GN=GSK3A PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.096e-12
Identity = 37/73 (50.68%), Postives = 44/73 (60.27%), Query Frame = -2 
Query:  569 QYSPSLRCTALEACAHPFFDELREPNARLPNGRPLPPLFNFKQELSGASPELVNKLIPDHVKRQLGLNFLHPA 787
            +Y+PS R + LEACAH FFDELR    +LPN RPLPPLFNF        P L   LIP H++   G   L P+
Sbjct:  385 EYTPSSRLSPLEACAHSFFDELRCLGTQLPNNRPLPPLFNFSAGELSIQPSLNAILIPPHLRSPAGTTTLTPS 457
[Close]
BLAST of CF832071 vs. ExPASy Swiss-Prot
Match: GSK3A_RAT (Glycogen synthase kinase-3 alpha OS=Rattus norvegicus GN=Gsk3a PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.189e-12
Identity = 35/66 (53.03%), Postives = 41/66 (62.12%), Query Frame = -2 
Query:  590 QYSPSLRCTALEACAHPFFDELREPNARLPNGRPLPPLFNFKQELSGASPELVNKLIPDHVKRQLG 787
            +Y+PS R + LEACAH FFDELR    +LPN RPLPPLFNF        P L   LIP H++   G
Sbjct:  385 EYTPSSRLSPLEACAHSFFDELRSLGTQLPNNRPLPPLFNFSPGELSIQPSLNAILIPPHLRSPSG 450
The following BLAST results are available for this feature:
BLAST of CF832071 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
GSK3_DICDI1.691e-1353.73Glycogen synthase kinase-3 OS=Dictyostelium discoi... [more]
GSK3A_MOUSE1.096e-1254.55Glycogen synthase kinase-3 alpha OS=Mus musculus G... [more]
GSK3A_HUMAN1.096e-1250.68Glycogen synthase kinase-3 alpha OS=Homo sapiens G... [more]
GSK3A_RAT3.189e-1253.03Glycogen synthase kinase-3 alpha OS=Rattus norvegi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01E07_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832071 ID=CF832071; Name=CF832071; organism=Citrus sinensis; type=EST; length=788bp
TTTTTTTTTTTTTTTTTCCAGAGGAGAATTGCAATAACATTACCTTTTAC
AAACAGCAAGTGACAACAATTGTCTGCAATTTGAAGTCAGTCACCACAGA
CCATCAAAATAGAGAAATTGAAAGACTTGCAAAGAGGGAAAAGAAAAACA
GGACCAAACCTGACAACATCATGCCCACCCCATCTTCTGGGCCATTCTCT
TTGGGGCTTTCTTCCTAGGTACAAATACATTTTTCCTCAGTTTTTCCTCT
ACTAACAGCAGTCTGATCAGTCCACCTTATCAACTTAACCTATCTTTACT
ATCAAACATGTACATAAACAAATGGGAACTTTAACAGAGGAGGGGGGGTG
GGACGAAGTGGGGAGGAGACACAGGAGGATGGAAAAGCAGAAAAAGAAGG
CACCAAGAAAAGCATAGCTGCCTGAGAATGTAGGCTTGCTGATCGAGCAA
CAACTGATGCTGATTAAGCCTCAATGCATGGCAGTTACGAACAAGGATAT
AATTCCCTTTGTGCTACACATCACCAAGTAGATTTCACTTCTATATTACT
TGTCTAGACCTATGTCCCGGCTGGATGCAAGAAATTCAGACCTAATTGCC
GTTTCACATGGTCTGGTATCAACTTATTAACAAGCTCTGGTGAAGCCCCC
GATAATTCCTGTTTAAAGTTGAAAAGAGGTGGCAGTGGGCGGCCATTTGG
TAGGCGAGCATTTGGCTCACGCAGTTCATCAAAGAAAGGATGTGCACATG
CTTCTAGCGCTGTACATCGGAGACTTGGTGAATACTGC
back to top