CF832072

Overview
NameCF832072
Unique NameCF832072
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10238 contig Csv1_Contig10238:1066..1682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832072 vs. ExPASy Swiss-Prot
Match: GSK3_DICDI (Glycogen synthase kinase-3 OS=Dictyostelium discoideum GN=gskA PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 2.590e-13
Identity = 33/63 (52.38%), Postives = 48/63 (76.19%), Query Frame = 3
Query:    9 MPSEAIDLASRLMQHSPSLQ*TALEACAHPFFDELREPNARLPNGRPLPPLFNF--KQELSVG 191
            +P+E+IDL S+++ + PS +   +E CAHPFFDELR+P   LP+G+PLPPLFNF   ++ S+G
Sbjct:  308 VPAESIDLISKILLYDPSSRLKPVEICAHPFFDELRDPKTCLPDGKPLPPLFNFTIAEQTSIG 370          

HSP 2 Score: 20.7866 bits (42), Expect = 2.590e-13
Identity = 8/18 (44.44%), Postives = 10/18 (55.56%), Query Frame = 1
Query:  196 PELVNKLIPDHGKRQLGL 249
            P+L   LIP H   Q+ L
Sbjct:  371 PKLAKTLIPSHAMNQIEL 388          
BLAST of CF832072 vs. ExPASy Swiss-Prot
Match: GSK3A_RAT (Glycogen synthase kinase-3 alpha OS=Rattus norvegicus GN=Gsk3a PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.023e-13
Identity = 37/62 (59.68%), Postives = 45/62 (72.58%), Query Frame = 3
Query:    6 RMPSEAIDLASRLMQHSPSLQ*TALEACAHPFFDELREPNARLPNGRPLPPLFNFKQ-ELSV 188
            R P EAI L S L++++PS + + LEACAH FFDELR    +LPN RPLPPLFNF   ELS+
Sbjct:  371 RTPPEAIALCSSLLEYTPSSRLSPLEACAHSFFDELRSLGTQLPNNRPLPPLFNFSPGELSI 432          
BLAST of CF832072 vs. ExPASy Swiss-Prot
Match: GSK3A_MOUSE (Glycogen synthase kinase-3 alpha OS=Mus musculus GN=Gsk3a PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 7.023e-13
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 3
Query:    6 RMPSEAIDLASRLMQHSPSLQ*TALEACAHPFFDELREPNARLPNGRPLPPLFNFKQ-ELSV 188
            + P EAI L S L++++PS + + LEACAH FFDELR   A+LPN RPLPPLFNF   ELS+
Sbjct:  372 KTPPEAIALCSSLLEYTPSSRLSPLEACAHSFFDELRRLGAQLPNDRPLPPLFNFSPGELSI 433          
BLAST of CF832072 vs. ExPASy Swiss-Prot
Match: GSK3H_DROME (Putative glycogen synthase kinase-3 homolog OS=Drosophila melanogaster GN=gskt PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.172e-13
Identity = 34/56 (60.71%), Postives = 45/56 (80.36%), Query Frame = 3
Query:    6 RMPSEAIDLASRLMQHSPSLQ*TALEACAHPFFDELR-EPNARLPNGRPLPPLFNF 170
            R P+EAIDL S+++ +SP+ + + L  CAHPFFDELR +P+ +LPNGR LPPLFNF
Sbjct:  285 RTPAEAIDLVSKMLIYSPNARVSPLMGCAHPFFDELRQDPHQQLPNGRSLPPLFNF 340          
BLAST of CF832072 vs. ExPASy Swiss-Prot
Match: GSK3A_HUMAN (Glycogen synthase kinase-3 alpha OS=Homo sapiens GN=GSK3A PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.043e-12
Identity = 37/62 (59.68%), Postives = 45/62 (72.58%), Query Frame = 3
Query:    6 RMPSEAIDLASRLMQHSPSLQ*TALEACAHPFFDELREPNARLPNGRPLPPLFNFKQ-ELSV 188
            R P EAI L S L++++PS + + LEACAH FFDELR    +LPN RPLPPLFNF   ELS+
Sbjct:  371 RTPPEAIALCSSLLEYTPSSRLSPLEACAHSFFDELRCLGTQLPNNRPLPPLFNFSAGELSI 432          
The following BLAST results are available for this feature:
BLAST of CF832072 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
GSK3_DICDI2.590e-1352.38Glycogen synthase kinase-3 OS=Dictyostelium discoi... [more]
GSK3A_RAT7.023e-1359.68Glycogen synthase kinase-3 alpha OS=Rattus norvegi... [more]
GSK3A_MOUSE7.023e-1359.68Glycogen synthase kinase-3 alpha OS=Mus musculus G... [more]
GSK3H_DROME9.172e-1360.71Putative glycogen synthase kinase-3 homolog OS=Dro... [more]
GSK3A_HUMAN2.043e-1259.68Glycogen synthase kinase-3 alpha OS=Homo sapiens G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01E07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832072 ID=CF832072; Name=CF832072; organism=Citrus sinensis; type=EST; length=618bp
CACAACGGATGCCTTCTGAGGCTATTGATCTTGCTTCACGCCTGATGCAG
CATTCACCAAGTCTCCAATGAACAGCGCTAGAAGCATGTGCACATCCTTT
CTTTGATGAACTGCGTGAGCCAAATGCTCGCCTACCAAATGGCCGCCCAC
TGCCACCTCTCTTCAACTTTAAACAGGAATTATCGGTGGGCTTCACCAGA
GCTTGTTAATAAGTTGATACCAGACCATGGGAAACGGCAATTAGGTCTGA
ATTTCTTGCATCCAGCCGGGACATAGGTCTAGACAAGTAATATAGAAGTG
AAATCTACTTGGTGATGTGTAGCACAAAGGGAATTATATCCTTGTTCGTA
ACTGCCATGCATTGAGGCTTAATCAACATCAGATGTTGCTCGATCAGCAA
GCCTACATTCTCAGGCAGCTATGCTTTTCTTGGTGCCTTCTTTTTCTGCT
TTTCCATCCTCCTGTGTCTCCTCCCCACTTCGTCCCACCCCCCCTCCTCT
GTTAAAGTTCCCATTTGTTTATGTACATGTTTGATAGTAAAGATAGGTTA
AGTTGATAAGGTGGACTGATCAGACTGCTGTTAGTAGAGGAAAAACTGAG
GAAAAATGTATTTGTACC
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