CF832147

Overview
NameCF832147
Unique NameCF832147
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length836
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10427 contig Csv1_Contig10427:1090..1922. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832147 vs. ExPASy Swiss-Prot
Match: PEPB_CANFA (Pepsin B OS=Canis familiaris GN=PGB PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.711e-11
Identity = 35/86 (40.70%), Postives = 47/86 (54.65%), Query Frame = 3 
Query:  366 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRG-PLWILGDVFMGPYHTVFDYSNMRVGFA 620
            G   V+C+ + S+P ++F I G    L P  Y+L     +   C  G     +  P G PLWILGDVF+  Y+TVFD +  RVGFA
Sbjct:  306 GNFVVNCNSIQSMPTITFVISGSPLPLPPSTYVLN----NNGYCTLGIEVTYLPSPNGQPLWILGDVFLREYYTVFDMAANRVGFA 387
The following BLAST results are available for this feature:
BLAST of CF832147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
PEPB_CANFA8.711e-1140.70Pepsin B OS=Canis familiaris GN=PGB PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01G07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832147 ID=CF832147; Name=CF832147; organism=Citrus sinensis; type=EST; length=836bp
CGACCATCATAACTCTAGTCAACCATGCCATTGGAGCCACTGGAATTGTC
AGTCAAGAATGCAAGGCTGTAGTTTCACAATATGGAGAGGAGATCATCAA
TATGCTTTTAGCTAAGGATGAACCTCAAAAAATTTGCTCACAGATTGGTT
TGTGCACATTTGATGGGTCTCGAGGTGTGAGTATGGGCATTGAGAGTGTC
GTTCCTGAGAATAATCATAGAGCATCTGGTGGTTTCCATGATGCAATGTG
CTCTACTTGTGAGATGGCAGTTGTGTGGATGCAGAACCAGCTCAAGCAGA
ACCAAACACAAGAGCGCATTCTTAACTATGTCAATGAGCTCTGTGATCGG
TTGCCTAGTCCTATGGGAGAATCGGCTGTTGACTGTAGCAGATTGTCTTC
CTTGCCTATTGTTTCCTTTACGATTGGTGGAAAGATATTTGACCTTACTC
CTGATCAGTACATCCTCAAAGTGGGCGAGGGAGATGCAGCTCAATGTATA
AGTGGATTCTCAGCTCTAGATGTTGCCCCACCACGTGGACCTCTCTGGAT
CTTGGGGGATGTTTTTATGGGTCCCTACCACACAGTCTTTGACTACAGCA
ACATGAGAGTGGGATTTGCTGAAGCCGCGTAAATAAGTTTGTTTTAAATT
ATGCTCAGTGAACCGTACCTCGTGGAATTTCAGTTGTTTCTTTAAGATGT
TGAAACTAAACCTTAAATAACTGTTCTATGTAAATGCTCTGATGTATGAC
AGCTGTTGAGAAGCCCAAGACGTTGGACTTTGTTTATAAATCCGTGCCTG
GACTCTTATTGGGGTTGTGCAAAAAAAAAAAAAAAA
back to top