CF832148

Overview
NameCF832148
Unique NameCF832148
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF832148_ssr598 microsatellite CF832148_ssr598:598..611. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5157 contig Csv1_Contig5157:51..691. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832148 vs. ExPASy Swiss-Prot
Match: RS19E_ARCFU (30S ribosomal protein S19e OS=Archaeoglobus fulgidus GN=rps19e PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.745e-21
Identity = 53/130 (40.77%), Postives = 76/130 (58.46%), Query Frame = -3
Query:  190 VKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVA 579
            V DV     +K  A  LK    +  P W   VKTG  KE +P   DW+Y+R AS+ R++Y+ G +G+   R  YGG KR GS+PP F K SG++ R+ LHQL+    ++  ++ GR +T  G+  LD+VA
Sbjct:    4 VYDVPADLLIKRVAERLK--DMVAPPEWAKYVKTGVHKERSPEQDDWWYLRLASIFRRVYIDGPVGIERLRTFYGGRKRRGSKPPKFRKGSGAIVRNALHQLEQLGFVK-KTREGRVVTPMGRSFLDKVA 130          
BLAST of CF832148 vs. ExPASy Swiss-Prot
Match: RS19E_METJA (30S ribosomal protein S19e OS=Methanocaldococcus jannaschii GN=rps19e PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.324e-20
Identity = 53/133 (39.85%), Postives = 73/133 (54.89%), Query Frame = -3
Query:  181 VKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRI 579
            V DV   + ++  A  LK    I +P W D VKTG  +E  P   DW+YIR AS+ RKIY+ G +GV   R  YGG K  G  P HF K SG++ R  L +L+   ++E  +  GR +T  G+  LD +A  +
Sbjct:    4 VYDVPADKLIQKTAEKLKEMN-IGVPEWVDFVKTGVSRERRPDQDDWWYIRCASILRKIYIYGPVGVSRLRTAYGGRKNRGHEPEHFYKGSGNIIRKALQELEKLGLVE-KTPEGRVVTPKGRSFLDNIAKEV 134          
BLAST of CF832148 vs. ExPASy Swiss-Prot
Match: RS19E_PYRHO (30S ribosomal protein S19e OS=Pyrococcus horikoshii GN=rps19e PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.382e-19
Identity = 51/130 (39.23%), Postives = 68/130 (52.31%), Query Frame = -3
Query:  190 VKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVA 579
            V DV     V+  A  LK   +I+ P W   VKTG  KE  P   DW+Y R AS+ R++Y+ G +G+   R  YGG K  G  P  F K+ GS+ R  L QL+    IE     GR +T  G+  LD++A
Sbjct:    4 VYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILRRVYIDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFIEKVPGKGRVVTPKGRSFLDKIA 133          
BLAST of CF832148 vs. ExPASy Swiss-Prot
Match: RS19E_AERPE (30S ribosomal protein S19e OS=Aeropyrum pernix GN=rps19e PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.475e-19
Identity = 53/136 (38.97%), Postives = 75/136 (55.15%), Query Frame = -3
Query:  181 NVKDVSPHEFVKAYAAHLKRS-GKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGG-LGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRI 582
            N  +V     ++  A  LK    +++ P W    KTG  KE  P D DW+Y+RAAS+ RK+Y     +G+ +FR IYGG +  GS P HF K+ GSV R IL QL++  ++      GR I+ +G+  LD  A  I
Sbjct:    3 NALEVPADLLIRRVARKLKEKYPQVKPPAWAYFAKTGPHKERPPTDRDWWYVRAASILRKLYKSPEPIGIETFRTIYGGRQNRGSAPEHFRKAGGSVPRKILQQLEEAGLVVKVPGRGRTISPAGRSLLDTTAREI 138          
BLAST of CF832148 vs. ExPASy Swiss-Prot
Match: RS19E_HALMA (30S ribosomal protein S19e OS=Haloarcula marismortui GN=rps19e PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 4.845e-18
Identity = 50/133 (37.59%), Postives = 70/133 (52.63%), Query Frame = -3
Query:  187 DVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGS----RPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAG 573
            DV P E ++A    L     IE P W +  KTG  +EL P   D++  RAAS+ RK+ + G +GV + R  YG  K+  +    RP   +K SG++ R  L QL+D   +E     GRR+T  G+  LD  AG
Sbjct:    6 DVPPEELIEALTETLADEDDIEAPDWAEFTKTGVDRELPPEQEDFWTRRAASLLRKVAVDGPVGVNALRSEYGTSKQGTTRYRVRPHQKTKGSGNIIRTALQQLEDAGYVETSENDGRRVTGDGRSLLDDTAG 138          
BLAST of CF832148 vs. ExPASy Swiss-Prot
Match: RS19E_THEVO (30S ribosomal protein S19e OS=Thermoplasma volcanium GN=rps19e PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.264e-18
Identity = 48/134 (35.82%), Postives = 68/134 (50.75%), Query Frame = -3
Query:  181 NVKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRI 582
            +VK V     +   +  LK   KI+ P W   VKTG  KE  P   DW Y+RAASM RK+Y+ G LG+      YGG    GS+  H +  S S+ R + H+L+   +++   K GR ++  G   LD  +  I
Sbjct:    3 SVKYVPSDMLINYVSGKLKEEKKIKEPNWVKFVKTGVSKEKPPLQDDWIYVRAASMLRKLYINGYLGISRMSSEYGGKVDRGSKRYHAASGSRSITRFLFHELESAGLVQKTQK-GRSLSPQGMSLLDNASKEI 135          
BLAST of CF832148 vs. ExPASy Swiss-Prot
Match: RS19E_THEAC (30S ribosomal protein S19e OS=Thermoplasma acidophilum GN=rps19e PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.036e-16
Identity = 45/131 (34.35%), Postives = 70/131 (53.44%), Query Frame = -3
Query:  190 NVKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVA 582
            +VK V     +   +  LK   KI  P W+  VKTG  +E +P + DW Y+RAA+M RK+Y+ G LG+      YGG    GS+  H ++ S S+ R++ H+L+    ++   K GR ++  G   LD  +
Sbjct:    3 SVKYVPSDLLINYVSEKLKSEKKIAEPDWSKYVKTGISREKSPVNRDWIYVRAAAMLRKLYINGYLGISRMSSEYGGKVDRGSKRYHAAQGSRSIIRYLFHELEKAGYVQKTPK-GRSLSPQGMSLLDNAS 132          
The following BLAST results are available for this feature:
BLAST of CF832148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RS19E_ARCFU2.745e-2140.7730S ribosomal protein S19e OS=Archaeoglobus fulgid... [more]
RS19E_METJA2.324e-2039.8530S ribosomal protein S19e OS=Methanocaldococcus j... [more]
RS19E_PYRHO4.382e-1939.2330S ribosomal protein S19e OS=Pyrococcus horikoshi... [more]
RS19E_AERPE7.475e-1938.9730S ribosomal protein S19e OS=Aeropyrum pernix GN=... [more]
RS19E_HALMA4.845e-1837.5930S ribosomal protein S19e OS=Haloarcula marismort... [more]
RS19E_THEVO8.264e-1835.8230S ribosomal protein S19e OS=Thermoplasma volcani... [more]
RS19E_THEAC2.036e-1634.3530S ribosomal protein S19e OS=Thermoplasma acidoph... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01G08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832148 ID=CF832148; Name=CF832148; organism=Citrus sinensis; type=EST; length=656bp
TTTTTTTTTTTTTTTTTAATATGAAAAAGAATATTCATTATCAATCCTTC
TTAGGTTACTAACAGAGAACTGAAAATCAACTAACGATGCTTTCTATCTA
CTACTCCCATTCAAACAACTAACTCAATAACATCAATCCTTTTGAAAGCT
TGAGCTAATCCCTCAAGGGGCAACAACTGCAATCCGTCCAGCAACTTGAT
CAAGATCCCGCTGCCCACTGGATGTGATTCTCCTTCCACCCTTGGAGTCA
AGCTCGATGATGTTCGTGTCCTGCAATTGGTGAAGTATGTGACGAGCAAC
AGAGCCACTGCTCTTGCTGAAATGAGGTGGGCGGCTACCGTTCCTCTTCC
CCCCTCCATAGATTCTACGGAAGGAACCAACACCAAGACCACCCCTCAAG
TAGATCTTCCTCGCCATTGAAGCAGCCCTGATATAGTACCAATCGGGGTC
ATAAGGGGCTAGCTCCTTCAACGTTCCAGTCTTGACGATGTCGTTCCAAG
TAGGAAGCTCAATCTTGCCGGAGCGCTTGAGATGGGCGGCGTAGGCCTTG
ACGAACTCGTGGGGAGAGACGTCCTTCACGTTTTTTGCAGTCTCCATTCT
CTCTCTCTCTCAGTCTGTGCTTCAGCGGCGGAGCAGCTGCGGTATGTGCT
ATGTGA
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