CF832155

Overview
NameCF832155
Unique NameCF832155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832155 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.660e-34
Identity = 70/165 (42.42%), Postives = 89/165 (53.94%), Query Frame = -2
Query:  244 YAWGYCYIRQVSPASSDXXXXXXXXPLP--GQYYGRGPIQLTWNCNYLRCGEALGXXXXXXXXXXXXXXXLSFKSAIWFWMTAQPP-KPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 729
            + WGYC + +++P +SD          P    YYGRGP+QL WN NY  CG  LG               LSF++A+WFWM       PSCHEVI  EW PS  D+ AGR PG+G+ TNII  G EC   G    +NRI ++  +C    + PGDNL C NQ  +
Sbjct:  141 FTWGYCLVNELNP-NSDYCDPKTKSSYPCVADYYGRGPLQLRWNYNYGECGNYLGQNLLDEPEKVATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGGECTKDGKTRQQNRIDYYLRYCDMLQVDPGDNLYCDNQETF 304          
BLAST of CF832155 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 3.802e-33
Identity = 67/127 (52.76%), Postives = 80/127 (62.99%), Query Frame = -2
Query:  229 NCNYLRCGEALGXXXXXXXXXXXXXXXLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVG-NDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLM 606
            N NY  CG+ L                ++FK+A+WFWMT Q PKPSCH VI + W PSA D  AGR+PGYG+ TNIINGGIECG  G N+A  NRIGF+ T+C   G   G NLDC  QRP+G  L+
Sbjct:  171 NYNYGLCGDDLNLPLLQEPELVETDPFIAFKTALWFWMTPQSPKPSCHAVITESWTPSAADSEAGRVPGYGVITNIINGGIECGQGGPNNANENRIGFYKTYCDSLGTTYGSNLDCYQQRPFGYGLL 297          
BLAST of CF832155 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.597e-31
Identity = 70/173 (40.46%), Postives = 102/173 (58.96%), Query Frame = -2
Query:  220 YAWGYCYIRQVSPASSDXXXXXXXXPL-PGQ-YYGRGPIQLTWNCNYLRCGEALGXXXXXXXXXXXXXXXLSFKSAIWFWMTAQPP-KPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQS 729
            Y+WGYCY ++V  A+SD        P  PG+ Y+ RGP+Q+ +N NY   GEA+G               ++FK+A+W WMTA+ P +PS H V+  +W P+  D  AGR PGYGLTTNI+ GG++C   G +   +R+ F+  +C   G+  G NLDC  Q P+  ++M+ S
Sbjct:  168 YSWGYCY-KEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQC--AGGNGGADRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGDIMSAS 337          
BLAST of CF832155 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.086e-31
Identity = 70/173 (40.46%), Postives = 101/173 (58.38%), Query Frame = -2
Query:  220 YAWGYCYIRQVSPASSDXXXXXXXXPL-PGQ-YYGRGPIQLTWNCNYLRCGEALGXXXXXXXXXXXXXXXLSFKSAIWFWMTAQPP-KPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQS 729
            Y+WGYCY ++V  A+SD        P  PG+ Y+ RGP+Q+ +N NY   GEA+G               ++FK+A+W WMTA+ P +PS H V+  +W P+  D  AGR PGYGLTTNI+ GG++C   G +   +R+ F+  +C   G+  G NLDC  Q P+   +M+ S
Sbjct:  168 YSWGYCY-KEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQC--AGGNGGADRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGGIMSAS 337          
BLAST of CF832155 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.764e-30
Identity = 61/132 (46.21%), Postives = 81/132 (61.36%), Query Frame = -2
Query:  244 YYGRGPIQLTWNCNYLRCGEALGXXXXXXXXXXXXXXXLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 639
            Y+GRGPIQ+++N NY   G+A+G               + FK+A+WFWMT Q PKPS H+VI   W PS+ D  AGR+PGYG+ TNII+GG+ECG      V +RIG++            DNLDC NQ+P+
Sbjct:   79 YFGRGPIQISYNYNYGAAGKAIGVDLLRNPDLVTSDNTVEFKTALWFWMTPQSPKPSSHDVITGRWSPSSTDKAAGRVPGYGVLTNIIDGGVECGKGQESHVADRIGYYK-----------DNLDCYNQKPF 199          
BLAST of CF832155 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.832e-19
Identity = 47/127 (37.01%), Postives = 63/127 (49.61%), Query Frame = -2
Query:  262 QYYGRGPIQLTWNCNYLRCGEALGXXXXXXXXXXXXXXXLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 642
            +YYGRGP+QL+WN NY   G+A+G                SFK+A+WFWMT                     +V++    G+G TT  ING +EC     D   +RI F+  +C  FG+ PGDNL C
Sbjct:  183 KYYGRGPLQLSWNYNYALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMT---------------------NVHSVMNQGFGATTKAINGALECNGQNQDQANDRIQFYKKYCADFGVAPGDNLTC 288          
BLAST of CF832155 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.025e-18
Identity = 51/154 (33.12%), Postives = 73/154 (47.40%), Query Frame = -2
Query:  262 CYIRQVSPASSDXXXXXXXXP--LPGQ-YYGRGPIQLTWNCNYLRCGEALGXXXXXXXXXXXXXXXLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 714
            CYI +++ AS D            PG+ YYGRGP+Q++WN NY   G+ +G               +SFK+A+WFWM                     N+V+   L G+G T   ING +EC      AV  R+ ++  +C +FG+ PG NL C
Sbjct:  156 CYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNYGPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWM---------------------NNVHQVMLQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVDPGGNLYC 288          
BLAST of CF832155 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.924e-17
Identity = 49/154 (31.82%), Postives = 72/154 (46.75%), Query Frame = -2
Query:  262 CYIRQVSPASSDXXXXXXXXP--LPGQ-YYGRGPIQLTWNCNYLRCGEALGXXXXXXXXXXXXXXXLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 714
            CYI +++ A+ D            PG+ YYGRGP+Q++WN NY   G+ +G               +SFK+A+WFWM                     N+V+     G+G T   ING +EC      AV  R+ ++  +C +FG+ PG NL C
Sbjct:  153 CYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNYGPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWM---------------------NNVHQVMSQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVSPGGNLYC 285          
BLAST of CF832155 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 2.924e-17
Identity = 55/158 (34.81%), Postives = 80/158 (50.63%), Query Frame = -2
Query:  268 YAWGYCYIRQVSPASSDXXXXXXXXPLPGQYYG-RGPIQLTWNCNYLRCGEALGXXXXXXXXXXXXXXXLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGND--AVR-NRIGFFTTFCGKFGIQPGDNL 729
            +AWG C+I   +   +D           G+ Y  RGPIQLT N NY   G+A+G               +SFK+A+WFWM+    KPSCH++++     +AN   A R+P  G+  NII+        G+D  AVR + IGF+  +C   G+  G +L
Sbjct:  205 HAWGLCHINTTTVTENDFCTSSDWPCAAGKKYSPRGPIQLTHNFNYGLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMSQHDNKPSCHDIVL-----NANSA-ANRIPNKGVIGNIISRAF-----GHDDFAVRSSSIGFYKRYCDMLGVSYGHDL 351          
BLAST of CF832155 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 6.515e-17
Identity = 49/155 (31.61%), Postives = 76/155 (49.03%), Query Frame = -2
Query:  262 YCYIRQVSPASSDXXXXXXXXP--LPGQ-YYGRGPIQLTWNCNYLRCGEALGXXXXXXXXXXXXXXXLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 717
            +CYI +++ AS D            PG+ Y+GRGPIQL+WN NY  CG++L                ++F++ +WFWM +  P       ++++              G+G T   IN G+EC    + AV  RI ++  +CG+ G+ PG NL C
Sbjct:  136 FCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGACGQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVRP-------VLNQ--------------GFGATIRAIN-GMECNGGNSGAVNARIRYYRDYCGQLGVDPGPNLSC 268          
The following BLAST results are available for this feature:
BLAST of CF832155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI8_POPTR7.660e-3442.42Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHIB_POPTR3.802e-3352.76Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHI7_ORYSJ1.597e-3140.46Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI2.086e-3140.46Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHIT_AVESA8.764e-3046.21Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
CHIP_BETVU1.832e-1937.01Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHI5_ORYSJ2.025e-1833.12Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_ORYSJ2.924e-1731.82Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
AGI_URTDI2.924e-1734.81Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHI4_BRANA6.515e-1731.61Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01G11_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832155 ID=CF832155; Name=CF832155; organism=Citrus sinensis; type=EST; length=733bp
TTTTTTTTTTGCCTTAATTGTCATGTTAAAATAATCAAACGATGAAAGAT
GGACAAGACTCATTGATCCATGTTGGATCAGTCTTATTTAATTTACTTAC
AATAAGAGCGTAACAAACTAACAATTTAGTTGTCCACCTACAAGTGTGAC
ATCTAAAGTTTTTATTAAGTAGCTTTTATTAAGCTTATTTTACTAAAACG
TTGATCATGATGATCACATAGATTGTGCCATCAGATTAAGGCCATAAGGC
CGTTGGTTGGAGCAATCAAGATTGTCACCAGGCTGAATCCCAAACTTGCC
ACAGAAAGTGGTAAAGAACCCAATACGGTTACGTACAGCGTCATTCCCAA
CGTAGCCACATTCAATTCCACCGTTGATTATATTTGTGGTTAGACCGTAT
CCCGGAAGCCGGCCGGCGTTTACGTCATTTGCTGATGGTTTCCATTCGTC
GATAATGACTTCGTGGCACGATGGCTTTGGTGGCTGTGCAGTCATCCAGA
ACCAGATTGCTGACTTGAATGATAGTACTGGATCAGNGGCAAGTAGGTCT
GGATTGTTCAACAAGTCCACCCCCAAGGCTTCTCCGCACCTTAAGTAATT
GCAATTCCAAGTGAGTTGAATTGGACCTCGGCCATAGTATTGCCCTGGCA
AGGGACATGGACAGTAAGGATAACAGTAGTCGGACGACGCAGGGCTAACT
TGCCTAATATAGCAATATCCCCAAGCATATTCT
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