CF832188

Overview
NameCF832188
Unique NameCF832188
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ACTB2_DANRE (Actin, cytoplasmic 2 OS=Danio rerio GN=actbb PE=2 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 1.973e-57
Identity = 104/121 (85.95%), Postives = 113/121 (93.39%), Query Frame = -2 
Query:  440 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 802
            FRCPE LFQPS +GME+ GIHETT+NSIMKCDVDIRKDLY N VLSGG+TM+PGIA RM KEIT+LAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  255 FRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITSLAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ACTB1_DANRE (Actin, cytoplasmic 1 OS=Danio rerio GN=actba PE=2 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 1.973e-57
Identity = 104/121 (85.95%), Postives = 113/121 (93.39%), Query Frame = -2 
Query:  440 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 802
            FRCPE LFQPS +GME+ GIHETT+NSIMKCDVDIRKDLY N VLSGG+TM+PGIA RM KEIT+LAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  255 FRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITSLAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ACT_BRUMA (Actin OS=Brugia malayi PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.577e-57
Identity = 105/121 (86.78%), Postives = 111/121 (91.74%), Query Frame = -2 
Query:  440 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 802
            FRCPE LFQPS +GME+ GIHETTYNSIMKCDVDIRKDLY N VLSGG+TM PGIA RM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGP IVHRKCF
Sbjct:  256 FRCPEALFQPSFLGMESTGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMVPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 376
[Close]
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ACTS_CYPCA (Actin, alpha skeletal muscle OS=Cyprinus carpio GN=acta1 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.577e-57
Identity = 104/121 (85.95%), Postives = 113/121 (93.39%), Query Frame = -2 
Query:  440 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 802
            FRCPE LFQPS IGME+AGIHET YNSIMKCD+DIRKDLY N VLSGG+TM+PGIA RM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDE+GPSIVHRKCF
Sbjct:  257 FRCPETLFQPSFIGMESAGIHETAYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ACTS_CARAU (Actin, alpha skeletal muscle OS=Carassius auratus GN=acta1 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.577e-57
Identity = 104/121 (85.95%), Postives = 113/121 (93.39%), Query Frame = -2 
Query:  440 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 802
            FRCPE LFQPS IGME+AGIHET YNSIMKCD+DIRKDLY N VLSGG+TM+PGIA RM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDE+GPSIVHRKCF
Sbjct:  257 FRCPETLFQPSFIGMESAGIHETAYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ACTB_SIGHI (Actin, cytoplasmic 1 OS=Sigmodon hispidus GN=ACTB PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.577e-57
Identity = 104/121 (85.95%), Postives = 113/121 (93.39%), Query Frame = -2 
Query:  440 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 802
            FRCPE LFQPS +GME+ GIHETT+NSIMKCDVDIRKDLY N VLSGG+T++PGIA RM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  255 FRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTIYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ACT2_XENLA (Actin, alpha sarcomeric/cardiac OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.577e-57
Identity = 104/121 (85.95%), Postives = 113/121 (93.39%), Query Frame = -2 
Query:  440 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 802
            FRCPE LFQPS IGME+AGIHET YNSIMKCD+DIRKDLY N VLSGG+TM+PGIA RM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDE+GPSIVHRKCF
Sbjct:  257 FRCPETLFQPSFIGMESAGIHETAYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ACTM_MOLOC (Actin, larval muscle-type OS=Molgula oculata PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.366e-57
Identity = 103/121 (85.12%), Postives = 113/121 (93.39%), Query Frame = -2 
Query:  440 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 802
            FRCPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIA RM KEITALAPS+MKIK++APPERKYSVWIGGSIL+SLSTF QMWI+K EYDE+GPSIVHRKCF
Sbjct:  258 FRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILSSLSTFNQMWITKAEYDEAGPSIVHRKCF 378
[Close]
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ACTB_XENBO (Actin, cytoplasmic 1 OS=Xenopus borealis GN=actb PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 4.396e-57
Identity = 104/121 (85.95%), Postives = 112/121 (92.56%), Query Frame = -2 
Query:  440 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 802
            FRCPE LFQPS +GME+ GIHETT+NSIMKCDVDIRKDLY N VLSGG+TM+PGIA RM KEITALAPS+MKIK++APPERKYSVWIGGSILA LSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  256 FRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILALLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ACTB2_TAKRU (Actin, cytoplasmic 2 OS=Takifugu rubripes GN=actbb PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 4.396e-57
Identity = 103/121 (85.12%), Postives = 113/121 (93.39%), Query Frame = -2 
Query:  440 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 802
            FRCPE LFQPS +GME+ GIHETT+NSIMKCDVDIRKDLY N VLSGG+TM+PGIA RM KEIT+LAP++MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  255 FRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITSLAPTTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
The following BLAST results are available for this feature:
BLAST of CF832188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 473
Match NameE-valueIdentityDescription
ACTB2_DANRE1.973e-5785.95Actin, cytoplasmic 2 OS=Danio rerio GN=actbb PE=2 ... [more]
ACTB1_DANRE1.973e-5785.95Actin, cytoplasmic 1 OS=Danio rerio GN=actba PE=2 ... [more]
ACT_BRUMA2.577e-5786.78Actin OS=Brugia malayi PE=1 SV=1[more]
ACTS_CYPCA2.577e-5785.95Actin, alpha skeletal muscle OS=Cyprinus carpio GN... [more]
ACTS_CARAU2.577e-5785.95Actin, alpha skeletal muscle OS=Carassius auratus ... [more]
ACTB_SIGHI2.577e-5785.95Actin, cytoplasmic 1 OS=Sigmodon hispidus GN=ACTB ... [more]
ACT2_XENLA2.577e-5785.95Actin, alpha sarcomeric/cardiac OS=Xenopus laevis ... [more]
ACTM_MOLOC3.366e-5785.12Actin, larval muscle-type OS=Molgula oculata PE=3 ... [more]
ACTB_XENBO4.396e-5785.95Actin, cytoplasmic 1 OS=Xenopus borealis GN=actb P... [more]
ACTB2_TAKRU4.396e-5785.12Actin, cytoplasmic 2 OS=Takifugu rubripes GN=actbb... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01H10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832188 ID=CF832188; Name=CF832188; organism=Citrus sinensis; type=EST; length=803bp
TTTTTTTTTTTTTTTGCAGCTGACACTAATTAAAGTTTTCTCGTACAATA
GCTATTAACATTAATGTTCCTTTTGAGAGGGGGAAAAAAAAAACCTTCAA
ATATGAAAATTTAGAAAATGAAATAGAAAAGCATCACAACCACTCTTCAT
CTCCAGCTACAAACATCCTACTTTAAAAAAAAAAAAGGAAAAAAAAGAAA
AAAGACTTGGTTGAACACCAGATGAATGCAAGGCAAGGAAGACGGTTGAG
TACAGAAATAAGCCCCCCTCAAACGCTGTAAGAAGCTTGTATAATAACAT
CAATATCGAGATATGCCTCCTTCAATGGCCCCAACCTTAGCACTTCTCCA
TGTCAACCAACTTGAGTTCGCGAAACGAGACACAAAAAACCAACTAAATG
GAAAAAAAGAACTCACCCATCGAGCACTTAAAGAACTTAGAAGCATTTCC
TGTGGACAATGGATGGACCAGACTCATCATACTCGCCCTTTGAGATCCAC
ATCTGCTGGAAGGTGCTGAGGGATGCAAGGATTGATCCTCCAATCCAAAC
ACTGTATTTTCTCTCTGGTGGAGCCACGACCTTGATCTTCATGCTGCTTG
GAGCAAGTGCTGTGATTTCCTTGCTCATACGGGCGGCAATACCGGGGAAC
ATAGTTGAACCCCCACTGAGAACAATGTTACCATACAGATCCTTTCTAAT
ATCCACATCACACTTCATGATGGAGTTGTAGGTAGTCTCATGAATACCAG
CAGCTTCCATTCCGATGAGAGATGGCTGGAACAGAACTTCTGGGCAACGG
AAT
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