CF832188

Overview
NameCF832188
Unique NameCF832188
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ARP4_YEAST (Actin-related protein 4 OS=Saccharomyces cerevisiae GN=ARP4 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.528e-17
Identity = 43/100 (43.00%), Postives = 65/100 (65.00%), Query Frame = -2
Query:  467 EAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPP---ERKYSVWIGGSILASLSTFQQMWISKGEYDESG 757
            E  G+ +  Y+SIM  DVD+R  L  N+VL+GG++  PG++ R+  E+  + P S+K +++      ER+Y  W+GGSIL SL TF Q+W+ K EY+E G
Sbjct:  381 ELIGLADLVYSSIMSSDVDLRATLAHNVVLTGGTSSIPGLSDRLMTELNKILP-SLKFRILTTGHTIERQYQSWLGGSILTSLGTFHQLWVGKKEYEEVG 479          
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ARP4_SCHPO (Actin-related protein 4 OS=Schizosaccharomyces pombe GN=arp4 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.528e-17
Identity = 44/108 (40.74%), Postives = 70/108 (64.81%), Query Frame = -2
Query:  443 GIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPP---ERKYSVWIGGSILASLSTFQQMWISKGEYDESGP---SIVHRKC 748
            GI +   N I +CDVDIR  L  N+++ GG+++  G + R+  E++ L P S ++K+ A     ER Y+ W+GGSIL+SL TF Q+WIS+ EY+E G    +++ ++C
Sbjct:  326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432          
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ARP4_NEUCR (Actin-related protein 4 OS=Neurospora crassa GN=arp-4 PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.528e-17
Identity = 43/92 (46.74%), Postives = 64/92 (69.57%), Query Frame = -2
Query:  443 DVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAP---PERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 709
            DVD+R ++ GN+V++G +++  G   R++ E+  + P  +KIK+ A     ER++  WIGGSILASL TF QMWIS+ EYDE+G  IV ++C
Sbjct:  378 DVDLRPNILGNVVVTGSTSLLNGFNDRLNHELAQMYPG-VKIKIHAAGLTTERRFGAWIGGSILASLGTFHQMWISRKEYDENGAGIVEKRC 468          
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ARP2_ARATH (Actin-related protein 2 OS=Arabidopsis thaliana GN=ARP2 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.528e-17
Identity = 47/130 (36.15%), Postives = 79/130 (60.77%), Query Frame = -2
Query:  449 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEI------TALAPS-----SMKIKVVAPPERKYSVWIGGSILAS-LSTFQQMWISKGEYDESGPSIVHR 802
            F+ PE LF P LI +E  G+ +  +  I + D+D R  LY +IVLSGGSTM+PG+ +R+ KEI      T L  +      +++++  PP RK+ V++GG++LA  +    + WI++ +Y E G + +++
Sbjct:  256 FQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRLEKEIQDRYLDTVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIMKDAPEFWINREDYMEEGINCLNK 385          
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ARP4_ASPFU (Actin-related protein 4 OS=Aspergillus fumigatus GN=arp4 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.996e-17
Identity = 45/108 (41.67%), Postives = 68/108 (62.96%), Query Frame = -2
Query:  443 EAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAP---PERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 757
            +A  + E    ++   DVD+R  L  N+V++G S++  G   R+++E+    P   ++++ A     ERK+  W+GGSILASL TF QMWISK EYDE GP+IV ++C
Sbjct:  359 QAQTVPELIKAALNGVDVDVRPHLLANVVVTGASSLLYGFTDRLNQELMQSYPGP-RVRISASGNTAERKFGSWVGGSILASLGTFHQMWISKKEYDEHGPNIVEKRC 465          
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ARP3_CAEBR (Actin-related protein 3 OS=Caenorhabditis briggsae GN=arx-1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.405e-17
Identity = 49/132 (37.12%), Postives = 72/132 (54.55%), Query Frame = -2
Query:  458 FRCPEVLFQPSLIGME-AAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALA----------------PSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSI 802
            F  PE+ F P     +    I +T    I +C +D+R+ LY NIVLSGGSTMF   A ++ +++  L+                P  + ++V++   ++Y+VW GGS+LAS S F Q+  SK EY E GPSI
Sbjct:  284 FLGPEIFFHPEFCNPDFTTPISDTIDTLIQQCPIDVRRGLYENIVLSGGSTMFKDFARKLQRDVKRLSDARLQMSETLSGGRLKPKPIDVQVISHKMQRYAVWFGGSMLASTSEFYQVSHSKAEYMEKGPSI 415          
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ARP7_ORYSJ (Actin-related protein 7 OS=Oryza sativa subsp. japonica GN=ARP7 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 4.447e-17
Identity = 47/123 (38.21%), Postives = 69/123 (56.10%), Query Frame = -2
Query:  440 EVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPE------RKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 790
            E LFQP ++G+E  GI      S+     +  + L  N +L GG+    G   R  +E   L+ S++   +V PPE       +YS W+GG+ILA +   Q   ++KG+YDE+GPSIVH+KCF
Sbjct:  239 EALFQPHILGLEDYGIVHQLVTSVSNVTPEYHRQLLENTMLCGGTASMTGFEDRFQREAN-LSASAICPSLVKPPEYMPENLARYSAWLGGAILAKVVFPQNQHVTKGDYDETGPSIVHKKCF 360          
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ARP7_ORYSI (Actin-related protein 7 OS=Oryza sativa subsp. indica GN=ARP7 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 4.447e-17
Identity = 47/123 (38.21%), Postives = 69/123 (56.10%), Query Frame = -2
Query:  440 EVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPE------RKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 790
            E LFQP ++G+E  GI      S+     +  + L  N +L GG+    G   R  +E   L+ S++   +V PPE       +YS W+GG+ILA +   Q   ++KG+YDE+GPSIVH+KCF
Sbjct:  239 EALFQPHILGLEDYGIVHQLVTSVSNVTPEYHRQLLENTMLCGGTASMTGFEDRFQREAN-LSASAICPSLVKPPEYMPENLARYSAWLGGAILAKVVFPQNQHVTKGDYDETGPSIVHKKCF 360          
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ARP4_CANGA (Actin-related protein 4 OS=Candida glabrata GN=ARP4 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.447e-17
Identity = 46/100 (46.00%), Postives = 65/100 (65.00%), Query Frame = -2
Query:  467 EAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPP---ERKYSVWIGGSILASLSTFQQMWISKGEYDESG 757
            E  GI +   +SI  CDVDIR  L  N+V++GGS+  PG++ R+  E+    P+ +K +V+A     ER+Y  W+GGSIL+SL TF Q+WI K EY+E G
Sbjct:  385 ELPGIVDLISSSISSCDVDIRASLAHNLVITGGSSTIPGLSDRILNELNMKFPA-LKFRVLATGQSIERQYQSWLGGSILSSLGTFHQLWIGKKEYEEVG 483          
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ARP3_CAEEL (Actin-related protein 3 OS=Caenorhabditis elegans GN=arx-1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.447e-17
Identity = 49/132 (37.12%), Postives = 72/132 (54.55%), Query Frame = -2
Query:  458 FRCPEVLFQPSLIGME-AAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALA----------------PSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSI 802
            F  PE+ F P     E    I +T    I +C +D+R+ LY NIVLSGGSTMF   A ++ +++  L+                P  + ++V++   ++Y+VW GGS+LAS S F Q+  +K EY E GPSI
Sbjct:  283 FLGPEIFFHPEFCNPEFTTPISDTIDTLIQQCPIDVRRGLYENIVLSGGSTMFKDFARKLQRDVKRLSDGRLQMSETLSGGRLKPKPIDVQVISHKMQRYAVWFGGSMLASTSEFYQVSHTKAEYMERGPSI 414          
The following BLAST results are available for this feature:
BLAST of CF832188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 473
Match NameE-valueIdentityDescription
ARP4_YEAST1.528e-1743.00Actin-related protein 4 OS=Saccharomyces cerevisia... [more]
ARP4_SCHPO1.528e-1740.74Actin-related protein 4 OS=Schizosaccharomyces pom... [more]
ARP4_NEUCR1.528e-1746.74Actin-related protein 4 OS=Neurospora crassa GN=ar... [more]
ARP2_ARATH1.528e-1736.15Actin-related protein 2 OS=Arabidopsis thaliana GN... [more]
ARP4_ASPFU1.996e-1741.67Actin-related protein 4 OS=Aspergillus fumigatus G... [more]
ARP3_CAEBR3.405e-1737.12Actin-related protein 3 OS=Caenorhabditis briggsae... [more]
ARP7_ORYSJ4.447e-1738.21Actin-related protein 7 OS=Oryza sativa subsp. jap... [more]
ARP7_ORYSI4.447e-1738.21Actin-related protein 7 OS=Oryza sativa subsp. ind... [more]
ARP4_CANGA4.447e-1746.00Actin-related protein 4 OS=Candida glabrata GN=ARP... [more]
ARP3_CAEEL4.447e-1737.12Actin-related protein 3 OS=Caenorhabditis elegans ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01H10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832188 ID=CF832188; Name=CF832188; organism=Citrus sinensis; type=EST; length=803bp
TTTTTTTTTTTTTTTGCAGCTGACACTAATTAAAGTTTTCTCGTACAATA
GCTATTAACATTAATGTTCCTTTTGAGAGGGGGAAAAAAAAAACCTTCAA
ATATGAAAATTTAGAAAATGAAATAGAAAAGCATCACAACCACTCTTCAT
CTCCAGCTACAAACATCCTACTTTAAAAAAAAAAAAGGAAAAAAAAGAAA
AAAGACTTGGTTGAACACCAGATGAATGCAAGGCAAGGAAGACGGTTGAG
TACAGAAATAAGCCCCCCTCAAACGCTGTAAGAAGCTTGTATAATAACAT
CAATATCGAGATATGCCTCCTTCAATGGCCCCAACCTTAGCACTTCTCCA
TGTCAACCAACTTGAGTTCGCGAAACGAGACACAAAAAACCAACTAAATG
GAAAAAAAGAACTCACCCATCGAGCACTTAAAGAACTTAGAAGCATTTCC
TGTGGACAATGGATGGACCAGACTCATCATACTCGCCCTTTGAGATCCAC
ATCTGCTGGAAGGTGCTGAGGGATGCAAGGATTGATCCTCCAATCCAAAC
ACTGTATTTTCTCTCTGGTGGAGCCACGACCTTGATCTTCATGCTGCTTG
GAGCAAGTGCTGTGATTTCCTTGCTCATACGGGCGGCAATACCGGGGAAC
ATAGTTGAACCCCCACTGAGAACAATGTTACCATACAGATCCTTTCTAAT
ATCCACATCACACTTCATGATGGAGTTGTAGGTAGTCTCATGAATACCAG
CAGCTTCCATTCCGATGAGAGATGGCTGGAACAGAACTTCTGGGCAACGG
AAT
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