CF832188

Overview
NameCF832188
Unique NameCF832188
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ARP4_KLULA (Actin-related protein 4 OS=Kluyveromyces lactis GN=ARP4 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.907e-17
Identity = 43/101 (42.57%), Postives = 67/101 (66.34%), Query Frame = -2
Query:  464 EAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPP---ERKYSVWIGGSILASLSTFQQMWISKGEYDESGP 757
            E AGI +    S+M+ DVD+R  L  N+VL+GG++  PG++ R+  E+    P+ +K ++++     ER+Y  W+GGSILASL TF Q+W+ + EY+E GP
Sbjct:  412 EVAGIVDLINKSMMEADVDLRATLAHNVVLTGGTSKIPGLSDRIMHELNKSLPA-LKFRMLSSGHLRERQYQGWLGGSILASLGTFHQLWVGREEYEEVGP 511          
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ARP4_ASHGO (Actin-related protein 4 OS=Ashbya gossypii GN=ARP4 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.294e-16
Identity = 43/100 (43.00%), Postives = 65/100 (65.00%), Query Frame = -2
Query:  467 EAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPP---ERKYSVWIGGSILASLSTFQQMWISKGEYDESG 757
            E +G+ +  Y+SIM  DVD+R  L  N+V++GG++  PG+  R+S E+    P+ +K +++      ER+Y  W+GGSILASL TF Q+W+ K EY E G
Sbjct:  371 EVSGLADLIYSSIMSTDVDLRTTLSHNVVITGGTSSLPGLMDRISAELNRSLPA-LKFRMLTSGQLRERQYQGWLGGSILASLGTFHQLWVGKQEYAEVG 469          
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ARP4_YARLI (Actin-related protein 4 OS=Yarrowia lipolytica GN=ARP4 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.207e-16
Identity = 47/125 (37.60%), Postives = 75/125 (60.00%), Query Frame = -2
Query:  440 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPP---ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPS-IVHRKCF 802
            F+  E  F    +   A G+ E   ++I   +VD+R  L  NIV++GG ++  G++ R+SK++T  A S +K++V A     ER++  WIGGS+L SL +F Q+W+SK E+ E G   +V +K F
Sbjct:  308 FKPSEYPFDGETVPDTARGLSEMVVDTINASNVDVRAHLANNIVITGGGSLVQGLSDRVSKDVTQ-ALSGLKVRVAAASNQEERRHGAWIGGSVLGSLGSFHQLWVSKQEWQEKGGDYLVEKKRF 431          
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ARP6_HUMAN (Actin-related protein 6 OS=Homo sapiens GN=ACTR6 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.917e-16
Identity = 40/119 (33.61%), Postives = 66/119 (55.46%), Query Frame = -2
Query:  446 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRK 802
            F  PE+LF PS IG++  GI E    SI     +++   + NIVL+GG+++FPG   R+  E+  L P+   + VV P       W GG +++    F+ M +++ +Y+E+G S+   K
Sbjct:  275 FAVPEILFNPSDIGIQEMGIPEAIVYSIQNLPEEMQPHFFKNIVLTGGNSLFPGFRDRVYSEVRCLTPTDYDVSVVLPENPITYAWEGGKLISENDDFEDMVVTREDYEENGHSVCEEK 393          
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ARP6_MOUSE (Actin-related protein 6 OS=Mus musculus GN=Actr6 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 6.421e-16
Identity = 40/119 (33.61%), Postives = 66/119 (55.46%), Query Frame = -2
Query:  446 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRK 802
            F  PE+LF PS IG++  GI E    SI     +++   + NIVL+GG+++FPG   R+  E+  L P+   + VV P       W GG +++    F+ M +++ +Y+E+G S+   K
Sbjct:  275 FAVPEILFNPSDIGIQEMGIPEAIVYSIQNLPEEMQPHFFKNIVLTGGNSLFPGFRERVYSEVRCLTPTDYDVSVVLPENPITYSWEGGKLISENDDFEDMVVTREDYEENGHSVCEEK 393          
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ARP6_DICDI (Actin-related protein 6 OS=Dictyostelium discoideum GN=arpF PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.421e-16
Identity = 47/121 (38.84%), Postives = 67/121 (55.37%), Query Frame = -2
Query:  440 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 802
            F  PE+LF PS IGM  AG+ E+   SI   + ++   LY NI+L GGST+FPG+  R+  E+  LAP    I +  P +   S   GG  LA    + +  ISK +Y+E G +  ++K F
Sbjct:  370 FTVPELLFNPSDIGMNQAGLAESIVQSINCTNSNLHIPLYSNIILLGGSTLFPGLKERLELELRKLAPEQYNINIFQPQDPILSPLYGGIRLAQQPDYLKYSISKQDYEEYGYNYCNKKFF 490          
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ARP6_CHICK (Actin-related protein 6 OS=Gallus gallus GN=ACTR6 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.387e-16
Identity = 40/119 (33.61%), Postives = 66/119 (55.46%), Query Frame = -2
Query:  446 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRK 802
            F  PE+LF PS IG++  GI E   +SI     +++   + NIVL+GG+T+FPG   R+  E+  L P+   + VV P       W GG +++    F+ + +++ +Y+E G +I   K
Sbjct:  275 FAVPEILFHPSDIGIQEMGIPEAIVDSIQNLPEEMQPHFFKNIVLTGGNTLFPGFRDRVYSEVRCLTPTDYDVSVVLPENPITYSWEGGKLISENDDFEDLVVTREDYEEHGHNICEEK 393          
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ARP3_DROME (Actin-related protein 3 OS=Drosophila melanogaster GN=Arp66B PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 1.868e-15
Identity = 46/132 (34.85%), Postives = 67/132 (50.76%), Query Frame = -2
Query:  458 FRCPEVLFQPSLIGME-AAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEIT----------------ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSI 802
            F  PE+ F P     +    + E   N I  C +D+R+ LY NIVLSGGSTMF     R+ ++I                  + P  + ++V+    ++Y+VW GGS+LAS   F Q+  +K  Y+E GPSI
Sbjct:  276 FLGPEIFFHPEFSNPDFTIPLSEIVDNVIQNCPIDVRRPLYNNIVLSGGSTMFKDFGRRLQRDIKRSVDTRLRISENLSEGRIKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKAAYEEYGPSI 407          
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ARP3_TAKRU (Actin-related protein 3 OS=Takifugu rubripes GN=actr3 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.162e-15
Identity = 49/132 (37.12%), Postives = 69/132 (52.27%), Query Frame = -2
Query:  458 FRCPEVLFQPSLIGME-AAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAAR--------------MSKEITA--LAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSI 802
            F  PE+ F P     +    I E     I  C +D+R+ LY NIVLSGGSTMF     R              MS+E++   L P  + ++V+    ++Y+VW GGS+LAS   F Q+  +K +Y+E GPSI
Sbjct:  276 FLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKMSEELSGGKLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEEIGPSI 407          
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ARP5_HUMAN (Actin-related protein 5 OS=Homo sapiens GN=ACTR5 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 5.436e-15
Identity = 44/120 (36.67%), Postives = 65/120 (54.17%), Query Frame = -2
Query:  443 RCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILA-SLSTFQQMWISKGEYDESGPSIVHRKC 799
            R PE++FQPSLIG E AGI ET    + +   DI++ L  N+ L+GG+TM+PG+ ARM KE+  + P     +V          W G    A +     ++WI++ EY+E G   +   C
Sbjct:  450 RAPEIIFQPSLIGEEQAGIAETLQYILDRYPKDIQEMLVQNVFLTGGNTMYPGMKARMEKELLEMRPFRSSFQVQLASNPVLDAWYGARDWALNHLDDNEVWITRKEYEEKGGEYLKEHC 569          
The following BLAST results are available for this feature:
BLAST of CF832188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 473
Match NameE-valueIdentityDescription
ARP4_KLULA9.907e-1742.57Actin-related protein 4 OS=Kluyveromyces lactis GN... [more]
ARP4_ASHGO1.294e-1643.00Actin-related protein 4 OS=Ashbya gossypii GN=ARP4... [more]
ARP4_YARLI2.207e-1637.60Actin-related protein 4 OS=Yarrowia lipolytica GN=... [more]
ARP6_HUMAN4.917e-1633.61Actin-related protein 6 OS=Homo sapiens GN=ACTR6 P... [more]
ARP6_MOUSE6.421e-1633.61Actin-related protein 6 OS=Mus musculus GN=Actr6 P... [more]
ARP6_DICDI6.421e-1638.84Actin-related protein 6 OS=Dictyostelium discoideu... [more]
ARP6_CHICK8.387e-1633.61Actin-related protein 6 OS=Gallus gallus GN=ACTR6 ... [more]
ARP3_DROME1.868e-1534.85Actin-related protein 3 OS=Drosophila melanogaster... [more]
ARP3_TAKRU4.162e-1537.12Actin-related protein 3 OS=Takifugu rubripes GN=ac... [more]
ARP5_HUMAN5.436e-1536.67Actin-related protein 5 OS=Homo sapiens GN=ACTR5 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01H10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832188 ID=CF832188; Name=CF832188; organism=Citrus sinensis; type=EST; length=803bp
TTTTTTTTTTTTTTTGCAGCTGACACTAATTAAAGTTTTCTCGTACAATA
GCTATTAACATTAATGTTCCTTTTGAGAGGGGGAAAAAAAAAACCTTCAA
ATATGAAAATTTAGAAAATGAAATAGAAAAGCATCACAACCACTCTTCAT
CTCCAGCTACAAACATCCTACTTTAAAAAAAAAAAAGGAAAAAAAAGAAA
AAAGACTTGGTTGAACACCAGATGAATGCAAGGCAAGGAAGACGGTTGAG
TACAGAAATAAGCCCCCCTCAAACGCTGTAAGAAGCTTGTATAATAACAT
CAATATCGAGATATGCCTCCTTCAATGGCCCCAACCTTAGCACTTCTCCA
TGTCAACCAACTTGAGTTCGCGAAACGAGACACAAAAAACCAACTAAATG
GAAAAAAAGAACTCACCCATCGAGCACTTAAAGAACTTAGAAGCATTTCC
TGTGGACAATGGATGGACCAGACTCATCATACTCGCCCTTTGAGATCCAC
ATCTGCTGGAAGGTGCTGAGGGATGCAAGGATTGATCCTCCAATCCAAAC
ACTGTATTTTCTCTCTGGTGGAGCCACGACCTTGATCTTCATGCTGCTTG
GAGCAAGTGCTGTGATTTCCTTGCTCATACGGGCGGCAATACCGGGGAAC
ATAGTTGAACCCCCACTGAGAACAATGTTACCATACAGATCCTTTCTAAT
ATCCACATCACACTTCATGATGGAGTTGTAGGTAGTCTCATGAATACCAG
CAGCTTCCATTCCGATGAGAGATGGCTGGAACAGAACTTCTGGGCAACGG
AAT
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