CF832188

Overview
NameCF832188
Unique NameCF832188
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7281 contig Csv1_Contig7281:890..1692. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ACT4_BOMMO (Actin, cytoplasmic A4 OS=Bombyx mori GN=A4 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.366e-58
Identity = 107/121 (88.43%), Postives = 113/121 (93.39%), Query Frame = -2 
Query:  440 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 802
            FRCPE LFQPS +GMEA GIHETTYNSIMKCDVDIRKDLY N VLSGG+TM+PGIA RM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  256 FRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ACT3B_HELAM (Actin-A3b, cytoplasmic OS=Helicoverpa armigera GN=actA3b PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.366e-58
Identity = 107/121 (88.43%), Postives = 113/121 (93.39%), Query Frame = -2 
Query:  440 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 802
            FRCPE LFQPS +GMEA GIHETTYNSIMKCDVDIRKDLY N VLSGG+TM+PGIA RM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  256 FRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ACT1_DROME (Actin-5C OS=Drosophila melanogaster GN=Act5C PE=1 SV=4)

HSP 1 Score: 226.483 bits (576), Expect = 1.366e-58
Identity = 107/121 (88.43%), Postives = 113/121 (93.39%), Query Frame = -2 
Query:  440 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 802
            FRCPE LFQPS +GMEA GIHETTYNSIMKCDVDIRKDLY N VLSGG+TM+PGIA RM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  256 FRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ACT17_DICDI (Actin-17 OS=Dictyostelium discoideum GN=act17 PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.366e-58
Identity = 105/121 (86.78%), Postives = 116/121 (95.87%), Query Frame = -2 
Query:  440 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 802
            FRCPE LFQPS +GME+AGIHETTYNSIMKCDVDIRKDLY N+VLSGG+TMFPGIA RM+KE+TALAPS+MKIK++APPERKYSVWIGGS+L+SLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  254 FRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYDNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSMLSSLSTFQQMWISKEEYDESGPSIVHRKCF 374
[Close]
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ACT_PUCGR (Actin OS=Puccinia graminis PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.785e-58
Identity = 105/121 (86.78%), Postives = 116/121 (95.87%), Query Frame = -2 
Query:  440 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 802
            FRCPE LFQPSL+G+EA+GIHETTYNSIMKCD+DIRKDLYGN+V+SGG+TM+ GI+ RM KEITALAPSSMK+K+VAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  255 FRCPEALFQPSLLGLEASGIHETTYNSIMKCDLDIRKDLYGNVVMSGGTTMYSGISDRMQKEITALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ACTC_BIOPF (Actin, cytoplasmic OS=Biomphalaria pfeifferi PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.785e-58
Identity = 107/121 (88.43%), Postives = 113/121 (93.39%), Query Frame = -2 
Query:  440 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 802
            FRCPE +FQPS +GME+AGIHETTYNSIMKCDVDIRKDLY N VLSGGSTMFPGIA RM KEITALAP +MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  256 FRCPEAVFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ACT2_DROME (Actin-42A OS=Drosophila melanogaster GN=Act42A PE=1 SV=3)

HSP 1 Score: 226.098 bits (575), Expect = 1.785e-58
Identity = 108/121 (89.26%), Postives = 113/121 (93.39%), Query Frame = -2 
Query:  440 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 802
            FRCPE LFQPS +GMEA GIHETTYNSIMKCDVDIRKDLY N VLSGG+TM+PGIA RM KEITALAPS+MKIK+VAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  256 FRCPESLFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ACTM_LYTPI (Actin, muscle (Fragment) OS=Lytechinus pictus PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.331e-58
Identity = 106/121 (87.60%), Postives = 114/121 (94.21%), Query Frame = -2 
Query:  440 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 802
            FRCPE LFQP+ IGME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG++M+PGIA RM KEITALAPSSMKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:   52 FRCPETLFQPAFIGMESAGIHETTYNSIMKCDIDIRKDLYANTVLSGGTSMYPGIADRMQKEITALAPSSMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 172
[Close]
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ACTM_HELTB (Actin, cytoskeletal OS=Heliocidaris tuberculata PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.331e-58
Identity = 106/121 (87.60%), Postives = 114/121 (94.21%), Query Frame = -2 
Query:  440 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 802
            FRCPE LFQP+ IGME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG++M+PGIA RM KEITALAPSSMKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  256 FRCPETLFQPAFIGMESAGIHETTYNSIMKCDIDIRKDLYANTVLSGGTSMYPGIADRMQKEITALAPSSMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CF832188 vs. ExPASy Swiss-Prot
Match: ACTM_HELER (Actin, cytoskeletal OS=Heliocidaris erythrogramma PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.331e-58
Identity = 106/121 (87.60%), Postives = 114/121 (94.21%), Query Frame = -2 
Query:  440 FRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAARMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 802
            FRCPE LFQP+ IGME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG++M+PGIA RM KEITALAPSSMKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  256 FRCPETLFQPAFIGMESAGIHETTYNSIMKCDIDIRKDLYANTVLSGGTSMYPGIADRMQKEITALAPSSMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
The following BLAST results are available for this feature:
BLAST of CF832188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 473
Match NameE-valueIdentityDescription
ACT4_BOMMO1.366e-5888.43Actin, cytoplasmic A4 OS=Bombyx mori GN=A4 PE=2 SV... [more]
ACT3B_HELAM1.366e-5888.43Actin-A3b, cytoplasmic OS=Helicoverpa armigera GN=... [more]
ACT1_DROME1.366e-5888.43Actin-5C OS=Drosophila melanogaster GN=Act5C PE=1 ... [more]
ACT17_DICDI1.366e-5886.78Actin-17 OS=Dictyostelium discoideum GN=act17 PE=3... [more]
ACT_PUCGR1.785e-5886.78Actin OS=Puccinia graminis PE=3 SV=1[more]
ACTC_BIOPF1.785e-5888.43Actin, cytoplasmic OS=Biomphalaria pfeifferi PE=3 ... [more]
ACT2_DROME1.785e-5889.26Actin-42A OS=Drosophila melanogaster GN=Act42A PE=... [more]
ACTM_LYTPI2.331e-5887.60Actin, muscle (Fragment) OS=Lytechinus pictus PE=3... [more]
ACTM_HELTB2.331e-5887.60Actin, cytoskeletal OS=Heliocidaris tuberculata PE... [more]
ACTM_HELER2.331e-5887.60Actin, cytoskeletal OS=Heliocidaris erythrogramma ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01H10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832188 ID=CF832188; Name=CF832188; organism=Citrus sinensis; type=EST; length=803bp
TTTTTTTTTTTTTTTGCAGCTGACACTAATTAAAGTTTTCTCGTACAATA
GCTATTAACATTAATGTTCCTTTTGAGAGGGGGAAAAAAAAAACCTTCAA
ATATGAAAATTTAGAAAATGAAATAGAAAAGCATCACAACCACTCTTCAT
CTCCAGCTACAAACATCCTACTTTAAAAAAAAAAAAGGAAAAAAAAGAAA
AAAGACTTGGTTGAACACCAGATGAATGCAAGGCAAGGAAGACGGTTGAG
TACAGAAATAAGCCCCCCTCAAACGCTGTAAGAAGCTTGTATAATAACAT
CAATATCGAGATATGCCTCCTTCAATGGCCCCAACCTTAGCACTTCTCCA
TGTCAACCAACTTGAGTTCGCGAAACGAGACACAAAAAACCAACTAAATG
GAAAAAAAGAACTCACCCATCGAGCACTTAAAGAACTTAGAAGCATTTCC
TGTGGACAATGGATGGACCAGACTCATCATACTCGCCCTTTGAGATCCAC
ATCTGCTGGAAGGTGCTGAGGGATGCAAGGATTGATCCTCCAATCCAAAC
ACTGTATTTTCTCTCTGGTGGAGCCACGACCTTGATCTTCATGCTGCTTG
GAGCAAGTGCTGTGATTTCCTTGCTCATACGGGCGGCAATACCGGGGAAC
ATAGTTGAACCCCCACTGAGAACAATGTTACCATACAGATCCTTTCTAAT
ATCCACATCACACTTCATGATGGAGTTGTAGGTAGTCTCATGAATACCAG
CAGCTTCCATTCCGATGAGAGATGGCTGGAACAGAACTTCTGGGCAACGG
AAT
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