CF832190

Overview
NameCF832190
Unique NameCF832190
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9802 contig Csv1_Contig9802:507..1133. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832190 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.238e-38
Identity = 67/139 (48.20%), Postives = 95/139 (68.35%), Query Frame = -2
Query:  210 PCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVVSFKSAIWLWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 626
            PC     Y+GRGPIQ++WN NY   G+ALG D L NP+++A    ++F++A+W WMT +  KPSCH+V++ E++P   DV A R  G+GL TNI+NGG+EC   G+  V NRIGF+  +C   G+  G NLDC +Q+P+
Sbjct:  152 PCYPGKSYHGRGPIQISWNFNYGPAGQALGFDGLRNPEIVANCSDIAFQTALWFWMTPRDTKPSCHQVMVGEYRPGPADVAANRTAGFGLVTNIVNGGLECNRAGDARVNNRIGFYRRYCQVLGVDVGPNLDCEHQQPF 290          
BLAST of CF832190 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.895e-37
Identity = 71/148 (47.97%), Postives = 99/148 (66.89%), Query Frame = -2
Query:  186 PCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVVSFKSAIWLWMTAQ-PPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQS 626
            PC     Y+ RGP+Q+ +N NY   GEA+G DLL NP+L+ATDP V+FK+A+WLWMTA+ P +PS H V+  +W P+  D  AGR PGYGLTTNI+ GG++C   G +   +R+ F+  +C   G+  G NLDC  Q P+  ++M+ S
Sbjct:  192 PCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQC--AGGNGGADRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGDIMSAS 337          
BLAST of CF832190 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.474e-37
Identity = 71/148 (47.97%), Postives = 98/148 (66.22%), Query Frame = -2
Query:  186 PCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVVSFKSAIWLWMTAQ-PPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQS 626
            PC     Y+ RGP+Q+ +N NY   GEA+G DLL NP+L+ATDP V+FK+A+WLWMTA+ P +PS H V+  +W P+  D  AGR PGYGLTTNI+ GG++C   G +   +R+ F+  +C   G+  G NLDC  Q P+   +M+ S
Sbjct:  192 PCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQC--AGGNGGADRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGGIMSAS 337          
BLAST of CF832190 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.512e-37
Identity = 70/132 (53.03%), Postives = 91/132 (68.94%), Query Frame = -2
Query:  210 YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVVSFKSAIWLWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 605
            Y+GRGPIQ+++N NY   G+A+GVDLL NPDL+ +D  V FK+A+W WMT Q PKPS H+VI   W PS+ D  AGR+PGYG+ TNII+GG+ECG      V +RIG++            DNLDC NQ+P+
Sbjct:   79 YFGRGPIQISYNYNYGAAGKAIGVDLLRNPDLVTSDNTVEFKTALWFWMTPQSPKPSSHDVITGRWSPSSTDKAAGRVPGYGVLTNIIDGGVECGKGQESHVADRIGYYK-----------DNLDCYNQKPF 199          
BLAST of CF832190 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.199e-37
Identity = 69/138 (50.00%), Postives = 87/138 (63.04%), Query Frame = -2
Query:  210 PLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVVSFKSAIWLWMTAQPP-KPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 620
            P    YYGRGP+QL WN NY  CG  LG +LL+ P+ +ATDPV+SF++A+W WM       PSCHEVI  EW PS  D+ AGR PG+G+ TNII  G EC   G    +NRI ++  +C    + PGDNL C NQ  +
Sbjct:  167 PCVADYYGRGPLQLRWNYNYGECGNYLGQNLLDEPEKVATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGGECTKDGKTRQQNRIDYYLRYCDMLQVDPGDNLYCDNQETF 304          
BLAST of CF832190 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.838e-25
Identity = 55/133 (41.35%), Postives = 73/133 (54.89%), Query Frame = -2
Query:  228 PCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVVSFKSAIWLWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 626
            PC    +YYGRGP+QL+WN NY   G+A+G D L NP+ +ATD   SFK+A+W WMT                     +V++    G+G TT  ING +EC     D   +RI F+  +C  FG+ PGDNL C
Sbjct:  177 PCAAGKKYYGRGPLQLSWNYNYALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMT---------------------NVHSVMNQGFGATTKAINGALECNGQNQDQANDRIQFYKKYCADFGVAPGDNLTC 288          
BLAST of CF832190 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.656e-23
Identity = 51/133 (38.35%), Postives = 72/133 (54.14%), Query Frame = -2
Query:  228 PCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVVSFKSAIWLWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 626
            PC    +YYGRGP+Q++WN NY   G+ +G D L +PD +A DP +SFK+A+W WM                     N+V+   L G+G T   ING +EC      AV  R+ ++  +C +FG+ PG NL C
Sbjct:  177 PCQPGKKYYGRGPLQISWNYNYGPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWM---------------------NNVHQVMLQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVDPGGNLYC 288          
BLAST of CF832190 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.318e-22
Identity = 50/133 (37.59%), Postives = 77/133 (57.89%), Query Frame = -2
Query:  228 PCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVVSFKSAIWLWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 626
            PC    +Y+GRGP+QL+WN NY+  G+ L  D LN+PD++  DP++SFK+++W W+     +     VI+D   P+          G+G T  IINGG EC       +  R+G++  +C + G+ PG+NL C
Sbjct:  135 PCNPNKEYFGRGPMQLSWNYNYIDAGKELHFDGLNDPDIVGRDPIISFKTSLWFWI-----RKGVQYVILD---PN---------QGFGATIRIINGGQECDGHNTAQMMARVGYYQEYCAQLGVSPGNNLPC 250          
BLAST of CF832190 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.722e-22
Identity = 50/133 (37.59%), Postives = 71/133 (53.38%), Query Frame = -2
Query:  228 PCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVVSFKSAIWLWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 626
            PC    +YYGRGP+Q++WN NY   G+ +G D L +PD +A DP +SFK+A+W WM                     N+V+     G+G T   ING +EC      AV  R+ ++  +C +FG+ PG NL C
Sbjct:  174 PCQPGKKYYGRGPLQISWNFNYGPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWM---------------------NNVHQVMSQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVSPGGNLYC 285          
BLAST of CF832190 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 1.722e-22
Identity = 57/134 (42.54%), Postives = 81/134 (60.45%), Query Frame = -2
Query:  234 PCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVVSFKSAIWLWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGND--AVR-NRIGFFTTFCGKFGIQPGDNL 626
            PC    +Y  RGPIQLT N NY   G+A+G DL+ NPDL+  DP++SFK+A+W WM+    KPSCH++++     +AN   A R+P  G+  NII+        G+D  AVR + IGF+  +C   G+  G +L
Sbjct:  229 PCAAGKKYSPRGPIQLTHNFNYGLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMSQHDNKPSCHDIVL-----NANSA-ANRIPNKGVIGNIISRAF-----GHDDFAVRSSSIGFYKRYCDMLGVSYGHDL 351          
The following BLAST results are available for this feature:
BLAST of CF832190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI10_ORYSJ2.238e-3848.20Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI7_ORYSJ1.895e-3747.97Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI2.474e-3747.97Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHIT_AVESA5.512e-3753.03Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
CHI8_POPTR7.199e-3750.00Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHIP_BETVU2.838e-2541.35Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHI5_ORYSJ2.656e-2338.35Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_DIOJA1.318e-2237.59Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI4_ORYSJ1.722e-2237.59Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
AGI_URTDI1.722e-2242.54Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01H11_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832190 ID=CF832190; Name=CF832190; organism=Citrus sinensis; type=EST; length=627bp
TTTTTTTTTTTTTTTTTGGAGAGACTCATTGATCCATGTTGGATCACCCT
TAATTAATTTACTTACAATAAGAGCGTAACAAACTAACCCTTTAGTTGTC
CACCTACAAGTGTGACATCTAAAGTTTTTATTAAGTAGCTTTTATTAAGC
TTATTTTACTAAAACGTTGATCATGATGATCACATAGATTGTGCCATCAG
ATTAAGGCCATAAGGCCGTTGGTTGGAGCAATCAAGATTGTCACCAGGCT
GAATCCCAAACTTGCCACAGAAAGTGGTAAAGAACCCAATACGGTTACGT
ACAGCGTCATTCCCAACGTAGCCACATTCAATTCCACCGTTGATTATATT
TGTGGTTAGACCGTATCCCGGAAGCCGGCCGGCGTTTACGTCATTTGCTG
ATGGTTTCCATTCATCGATAATGACTTCGTGGCACGATGGCTTTGGTGGC
TGTGCAGTCATCCACAACCAGATTGCTGACTTGAATGATACTACTGGATC
AGTGGCAAGTAGGTCTGGATTGTTCAACAAGTCCACCCCCAAGGCTTCTC
CGCACCTTAAGTAATTGCAATTCCAAGTGAGTTGAATTGGACCTCGGCCA
TAGTATTGCCCTGGCAAGGGACATGGA
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