CF832198

Overview
NameCF832198
Unique NameCF832198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RK14_EUCGG (50S ribosomal protein L14, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rpl14 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.342e-11
Identity = 40/119 (33.61%), Postives = 70/119 (58.82%), Query Frame = -2
Query:  313 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 657
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P+    R +V+ AVIVR  K  +R +G+ + ++DNA V+++ +G  KG+ + G I +E   L + +I S A  ++
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDIIVAVIKEALPNTPLERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 122          
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RK14_CICAR (50S ribosomal protein L14, chloroplastic OS=Cicer arietinum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.342e-11
Identity = 41/119 (34.45%), Postives = 69/119 (57.98%), Query Frame = -2
Query:  313 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 657
            +N ADN+GA+ L  I + G   R      A +GD+++A +KK  P+    R +V+ AVIVR  K  +R +G+ + ++DNA V+++ +G  KG+ I   I +E   L + +I S A  ++
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AYIGDIIVAVIKKAVPNTPFERSEVIRAVIVRTCKELKRSNGIIIKYDDNAAVVIDKEGNPKGTRIFCAIARELRQLNFTKIVSLAPEVL 122          
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RK14_CARPA (50S ribosomal protein L14, chloroplastic OS=Carica papaya GN=rpl14 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.342e-11
Identity = 41/119 (34.45%), Postives = 70/119 (58.82%), Query Frame = -2
Query:  313 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 657
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P+    R +V+ AVIVR  K  +R +G+ + ++DNA V+++ +G  KG+ I G I +E   L + +I S A  ++
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELKRNNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIPRELRQLNFTKIVSLAPEVL 122          
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL14_SYNS3 (50S ribosomal protein L14 OS=Synechococcus sp. (strain CC9311) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.977e-11
Identity = 42/116 (36.21%), Postives = 65/116 (56.03%), Query Frame = -2
Query:  313 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD-LWPRIASAANAIV 648
            ADN+GAK +  I V G   R      A VGD+++ATVK   P++  K   ++ AV+VR +   RR  G  + F+DNA VI+N     KG+ + GP+ +E  +  + +I S A  ++
Sbjct:   11 ADNSGAKRIQCIRVLGTNRRY-----AHVGDVIVATVKDAMPNMGVKKSDIVKAVVVRTKATMRRDTGNSIRFDDNAAVIINDDKNPKGTRVFGPVARELRERSFTKIVSLAPEVI 121          
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL14_STRSV (50S ribosomal protein L14 OS=Streptococcus sanguinis (strain SK36) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.977e-11
Identity = 40/102 (39.22%), Postives = 60/102 (58.82%), Query Frame = -2
Query:  352 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 648
            ADN+GA+ +  I V G  GR      A +GD+++A+VK+  P    K   V+ AVIVR +   RRKDG ++ F++NA VI+      +G+ I GP+ +E  D
Sbjct:   11 ADNSGAREILTIKVLGGSGR----KFANIGDVIVASVKQATPGGAVKKGDVVKAVIVRTKSGARRKDGSYIKFDENAAVIIREDKTPRGTRIFGPVARELRD 108          
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL14_STRGC (50S ribosomal protein L14 OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.977e-11
Identity = 40/102 (39.22%), Postives = 60/102 (58.82%), Query Frame = -2
Query:  352 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 648
            ADN+GA+ +  I V G  GR      A +GD+++A+VK+  P    K   V+ AVIVR +   RRKDG ++ F++NA VI+      +G+ I GP+ +E  D
Sbjct:   11 ADNSGAREILTIKVLGGSGR----KFANIGDVIVASVKQATPGGAVKKGDVVKAVIVRTKSGARRKDGSYIKFDENAAVIIREDKTPRGTRIFGPVARELRD 108          
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL14_PROAC (50S ribosomal protein L14 OS=Propionibacterium acnes GN=rplN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.977e-11
Identity = 47/116 (40.52%), Postives = 69/116 (59.48%), Query Frame = -2
Query:  313 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP--DLRK-KVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD-LWPRIASAANAIV 648
            ADNTGAK L  I V G  G   R   A +GD ++ TVK   P  +++K +V+ AV+VR  K  RR DG ++ F++NA V++   GE +G+ I GPI +E  +  + RI S A  ++
Sbjct:   11 ADNTGAKELLCIRVLG--GSKRRY--AYLGDTIVCTVKDAIPGGNVKKGEVVKAVVVRTVKSHRRPDGSYIKFDENAAVLLKGDGEPRGTRIFGPIARELREKKFMRIVSLAPEVI 122          
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL14_MYCPN (50S ribosomal protein L14 OS=Mycoplasma pneumoniae GN=rplN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.977e-11
Identity = 45/119 (37.82%), Postives = 68/119 (57.14%), Query Frame = -2
Query:  313 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 657
            +N ADNTGAK + II V G      R   A +GD+V+ +VK   P     + +V+ AVIVR +K  +RKDG  + F+DNA V++      +G+ I GP+ +E  +  + +I S A  +V
Sbjct:    8 LNVADNTGAKQVGIIKVLGS----TRKRYAFLGDVVVVSVKDAIPSGMVKKGQVLRAVIVRTKKGQQRKDGTHLKFDDNACVLIKEDKSPRGTRIFGPVARELRERGYNKILSLAVEVV 122          
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL14_MYCA5 (50S ribosomal protein L14 OS=Mycoplasma arthritidis (strain 158L3-1) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.977e-11
Identity = 40/104 (38.46%), Postives = 63/104 (60.58%), Query Frame = -2
Query:  352 NCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 654
            N ADN+GAK + II  K + G + R  S  +GD+V+ TVKK  P       +V+ AVIVR ++   R++G  + F+DNA V++   G ++G+ + GP+ +E  D
Sbjct:    9 NVADNSGAKEVMII--KNLGGSIVR--STNIGDVVVVTVKKAIPHGFVKEGQVLKAVIVRTKRGLMRENGSHIRFDDNAVVLIKEDGTLRGTRVFGPVARELRD 108          
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL14_LACRJ (50S ribosomal protein L14 OS=Lactobacillus reuteri (strain JCM 1112) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.977e-11
Identity = 40/116 (34.48%), Postives = 69/116 (59.48%), Query Frame = -2
Query:  313 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKEC-ADLWPRIASAANAIV 648
            ADN+GA+ + +I + G     +R+ +  +GD+++ATVK+  P     +  V+ AV+VR +    RKDG ++ F++NA V++N     KG+ I GPI +E   D + +I S A  ++
Sbjct:   11 ADNSGAREILVIKILGG----SRVKTGNIGDIIVATVKQATPGGVVKKGDVVKAVVVRTKHGIHRKDGSYIKFDENAAVLINNDKSPKGTRIFGPIARELRGDDFMKIVSLAPEVL 122          
The following BLAST results are available for this feature:
BLAST of CF832198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 411
Match NameE-valueIdentityDescription
RK14_EUCGG5.342e-1133.6150S ribosomal protein L14, chloroplastic OS=Eucaly... [more]
RK14_CICAR5.342e-1134.4550S ribosomal protein L14, chloroplastic OS=Cicer ... [more]
RK14_CARPA5.342e-1134.4550S ribosomal protein L14, chloroplastic OS=Carica... [more]
RL14_SYNS36.977e-1136.2150S ribosomal protein L14 OS=Synechococcus sp. (st... [more]
RL14_STRSV6.977e-1139.2250S ribosomal protein L14 OS=Streptococcus sanguin... [more]
RL14_STRGC6.977e-1139.2250S ribosomal protein L14 OS=Streptococcus gordoni... [more]
RL14_PROAC6.977e-1140.5250S ribosomal protein L14 OS=Propionibacterium acn... [more]
RL14_MYCPN6.977e-1137.8250S ribosomal protein L14 OS=Mycoplasma pneumoniae... [more]
RL14_MYCA56.977e-1138.4650S ribosomal protein L14 OS=Mycoplasma arthritidi... [more]
RL14_LACRJ6.977e-1134.4850S ribosomal protein L14 OS=Lactobacillus reuteri... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01H16_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01H16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832198 ID=CF832198; Name=CF832198; organism=Citrus sinensis; type=EST; length=733bp
TTTTTTTTTTTTTTTTTAAAAAAAACCAACCAATTAGTAACCTTATTTAT
AAAAACAAAACTTTAAAACGTTTAAAACAAAATCAATATTTCCTCTTAAA
AGAACAAAATTCTTTGGAAATTAAACACAAATTAAATTCATTCTACAATT
AGAATAGGTAGAAAATCTGAAATCTCCTTGTATCTGTCTAGCAATAGCCA
ATAGAGGAACAACCACAACACTCATCAGTAGGAAATGATCCCAATGATAT
TAACAGACCCTACGGTCACCTACCAAACTAAGGCCAAAAAAATCCCTTAA
AACCCCCACTCAAACAATAGCATTGGCAGCACTTGCAATTCTTGGCCACA
GATCAGCACACTCCTTACCAATTGGTCCAGTTATGGCAGATCCTTTCATT
TCCCCCTTAGGGTTGACGATGACACCAGCATTATCTTCAAAGTACATGAA
GACGCCGTCCTTTCGGCGCCAGGGCTTGCGCTGGCGGACGATGACAGCTG
GCATGACCTTTTTCCTCAGATCGGGCTTTCCTTTCTTGACAGTGGCCATG
ACCATGTCGCCGACGCAGGCCGACGGAAGTCGGTTGAGTCTCCCTTTGAT
TCCTTTCACCGATATTATGTAGAGATTCTTCGCACCCGTGTTGTCGGCAC
AGTTCACCGTCGCCGCCACCGGCAGACCCAGCGACATCCTGAACTTGTTC
CCCGCCGACCCTCCCCTTCCTCGCTTCGACATT
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