CF832198

Overview
NameCF832198
Unique NameCF832198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL14_UREPA (50S ribosomal protein L14 OS=Ureaplasma parvum GN=rplN PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 45/116 (38.79%), Postives = 68/116 (58.62%), Query Frame = -2
Query:  313 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 648
            ADNTGAK + +I V G  G   R  S  VGD+V+ +VKK  P     + ++  AVIVR +K  RR+ G+ + F++NA V++      +GS I GP+ +E  D  + +IAS A  ++
Sbjct:   11 ADNTGAKEVGVIKVLG--GSKKRYAS--VGDIVVVSVKKATPAGLIAKGQMAKAVIVRTKKSIRRESGLLIRFDENACVLIKEDKTPRGSRIFGPVAREIRDRGYTKIASLAPEVL 122          
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL14_UREP2 (50S ribosomal protein L14 OS=Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 45/116 (38.79%), Postives = 68/116 (58.62%), Query Frame = -2
Query:  313 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 648
            ADNTGAK + +I V G  G   R  S  VGD+V+ +VKK  P     + ++  AVIVR +K  RR+ G+ + F++NA V++      +GS I GP+ +E  D  + +IAS A  ++
Sbjct:   11 ADNTGAKEVGVIKVLG--GSKKRYAS--VGDIVVVSVKKATPAGLIAKGQMAKAVIVRTKKSIRRESGLLIRFDENACVLIKEDKTPRGSRIFGPVAREIRDRGYTKIASLAPEVL 122          
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL14_TREDE (50S ribosomal protein L14 OS=Treponema denticola GN=rplN PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 46/111 (41.44%), Postives = 63/111 (56.76%), Query Frame = -2
Query:  352 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP-DLRKK--VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 675
            + V   +N ADN+GAK +  I V G  G   R   A +GD+++  VK+  P  + KK  V  AVIVR  K +RR DG ++ F+DNA VIV+     KG  I GP+ +E  D
Sbjct:    2 IQVETRLNVADNSGAKLVECIKVIG--GSKRRY--AGIGDIIVVAVKEALPTSVIKKGTVEKAVIVRVSKEYRRPDGTYIRFDDNACVIVDDNKNPKGKRIFGPVARELRD 108          
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL14_STRTD (50S ribosomal protein L14 OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 44/116 (37.93%), Postives = 66/116 (56.90%), Query Frame = -2
Query:  313 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD-LWPRIASAANAIV 648
            ADN+GA+ +  I V G  GR      A +GD+++ATVK+  P    K   V+ AVIVR +   RR DG ++ F+DNA VI+      +G+ I GP+ +E  +  + RI S A  ++
Sbjct:   11 ADNSGAREILTIKVLGGSGR----KFANIGDVIVATVKQATPGGAVKKGDVVKAVIVRTKTGARRSDGSYIKFDDNAAVIIRDDKTPRGTRIFGPVARELREGGYMRIVSLAPEVL 122          
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL14_STRT2 (50S ribosomal protein L14 OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 44/116 (37.93%), Postives = 66/116 (56.90%), Query Frame = -2
Query:  313 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD-LWPRIASAANAIV 648
            ADN+GA+ +  I V G  GR      A +GD+++ATVK+  P    K   V+ AVIVR +   RR DG ++ F+DNA VI+      +G+ I GP+ +E  +  + RI S A  ++
Sbjct:   11 ADNSGAREILTIKVLGGSGR----KFANIGDVIVATVKQATPGGAVKKGDVVKAVIVRTKTGARRSDGSYIKFDDNAAVIIRDDKTPRGTRIFGPVARELREGGYMRIVSLAPEVL 122          
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL14_STRT1 (50S ribosomal protein L14 OS=Streptococcus thermophilus (strain CNRZ 1066) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 44/116 (37.93%), Postives = 66/116 (56.90%), Query Frame = -2
Query:  313 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD-LWPRIASAANAIV 648
            ADN+GA+ +  I V G  GR      A +GD+++ATVK+  P    K   V+ AVIVR +   RR DG ++ F+DNA VI+      +G+ I GP+ +E  +  + RI S A  ++
Sbjct:   11 ADNSGAREILTIKVLGGSGR----KFANIGDVIVATVKQATPGGAVKKGDVVKAVIVRTKTGARRSDGSYIKFDDNAAVIIRDDKTPRGTRIFGPVARELREGGYMRIVSLAPEVL 122          
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL14_LEUCK (50S ribosomal protein L14 OS=Leuconostoc citreum (strain KM20) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 47/116 (40.52%), Postives = 64/116 (55.17%), Query Frame = -2
Query:  313 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 648
            ADN+GA+ +  I V G  GR      A VGDM++ATVK+  P    K   V+ AVIVR     RR DG ++ F++NA VIV       G+ I GP+ +E  D  + RI S A  ++
Sbjct:   11 ADNSGAREILTIKVLGGSGR----KFAGVGDMIVATVKQAIPGGNVKKGDVVKAVIVRTVSDVRRADGSYINFDENAAVIVKDDKSPVGTRIFGPVARELRDSDYMRIVSLAPEVL 122          
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL14_GEOSM (50S ribosomal protein L14 OS=Geobacter sp. (strain M21) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 40/102 (39.22%), Postives = 63/102 (61.76%), Query Frame = -2
Query:  361 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 657
            ++ ADN+GAK L+ I V G  G   R   A +GD+++A+VK+  P+ + K   V+ AV+VR  K   R DG ++ F+ N+GV++N   E  G+ I GP+ +E
Sbjct:    8 LDVADNSGAKKLFCIKVLG--GSKRRY--AGIGDIIVASVKEALPNSKVKKGDVVKAVVVRTAKAVGRPDGSYIRFDTNSGVVINNAKEPVGTRIFGPVARE 105          
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL14_GEOKA (50S ribosomal protein L14 OS=Geobacillus kaustophilus GN=rplN PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 39/102 (38.24%), Postives = 61/102 (59.80%), Query Frame = -2
Query:  352 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 648
            ADN+GA+ + +I V G  GR      A +GD+V+ATVK   P     + +V+ AV+VR ++  RR DG ++ F++NA VI+      +G+ I GP+ +E  D
Sbjct:   11 ADNSGAREVLVIKVLGGSGRRY----ANIGDVVVATVKDATPGGVVKKGQVVKAVVVRTKRGVRRPDGSYIRFDENACVIIRDDKSPRGTRIFGPVARELRD 108          
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL14_GEOBB (50S ribosomal protein L14 OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 40/102 (39.22%), Postives = 63/102 (61.76%), Query Frame = -2
Query:  361 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 657
            ++ ADN+GAK L+ I V G  G   R   A +GD+++A+VK+  P+ + K   V+ AV+VR  K   R DG ++ F+ N+GV++N   E  G+ I GP+ +E
Sbjct:    8 LDVADNSGAKKLFCIKVLG--GSKRRY--AGIGDIIVASVKEALPNSKVKKGDVVKAVVVRTAKAVGRPDGSYIRFDTNSGVVINNAKEPVGTRIFGPVARE 105          
The following BLAST results are available for this feature:
BLAST of CF832198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 411
Match NameE-valueIdentityDescription
RL14_UREPA9.112e-1138.7950S ribosomal protein L14 OS=Ureaplasma parvum GN=... [more]
RL14_UREP29.112e-1138.7950S ribosomal protein L14 OS=Ureaplasma parvum ser... [more]
RL14_TREDE9.112e-1141.4450S ribosomal protein L14 OS=Treponema denticola G... [more]
RL14_STRTD9.112e-1137.9350S ribosomal protein L14 OS=Streptococcus thermop... [more]
RL14_STRT29.112e-1137.9350S ribosomal protein L14 OS=Streptococcus thermop... [more]
RL14_STRT19.112e-1137.9350S ribosomal protein L14 OS=Streptococcus thermop... [more]
RL14_LEUCK9.112e-1140.5250S ribosomal protein L14 OS=Leuconostoc citreum (... [more]
RL14_GEOSM9.112e-1139.2250S ribosomal protein L14 OS=Geobacter sp. (strain... [more]
RL14_GEOKA9.112e-1138.2450S ribosomal protein L14 OS=Geobacillus kaustophi... [more]
RL14_GEOBB9.112e-1139.2250S ribosomal protein L14 OS=Geobacter bemidjiensi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01H16_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01H16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832198 ID=CF832198; Name=CF832198; organism=Citrus sinensis; type=EST; length=733bp
TTTTTTTTTTTTTTTTTAAAAAAAACCAACCAATTAGTAACCTTATTTAT
AAAAACAAAACTTTAAAACGTTTAAAACAAAATCAATATTTCCTCTTAAA
AGAACAAAATTCTTTGGAAATTAAACACAAATTAAATTCATTCTACAATT
AGAATAGGTAGAAAATCTGAAATCTCCTTGTATCTGTCTAGCAATAGCCA
ATAGAGGAACAACCACAACACTCATCAGTAGGAAATGATCCCAATGATAT
TAACAGACCCTACGGTCACCTACCAAACTAAGGCCAAAAAAATCCCTTAA
AACCCCCACTCAAACAATAGCATTGGCAGCACTTGCAATTCTTGGCCACA
GATCAGCACACTCCTTACCAATTGGTCCAGTTATGGCAGATCCTTTCATT
TCCCCCTTAGGGTTGACGATGACACCAGCATTATCTTCAAAGTACATGAA
GACGCCGTCCTTTCGGCGCCAGGGCTTGCGCTGGCGGACGATGACAGCTG
GCATGACCTTTTTCCTCAGATCGGGCTTTCCTTTCTTGACAGTGGCCATG
ACCATGTCGCCGACGCAGGCCGACGGAAGTCGGTTGAGTCTCCCTTTGAT
TCCTTTCACCGATATTATGTAGAGATTCTTCGCACCCGTGTTGTCGGCAC
AGTTCACCGTCGCCGCCACCGGCAGACCCAGCGACATCCTGAACTTGTTC
CCCGCCGACCCTCCCCTTCCTCGCTTCGACATT
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