CF832199

Overview
NameCF832199
Unique NameCF832199
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RK14_PHYPA (50S ribosomal protein L14, chloroplastic OS=Physcomitrella patens GN=rpl14 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.098e-13
Identity = 39/102 (38.24%), Postives = 64/102 (62.75%), Query Frame = 3
Query:   78 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 374
            +N ADN+GA+ L  I + G   R      A +GD+++A VK+  P++   + +V+ AV+VR  K  +RK+G  + F+DNA VI+N +G  KG+ + GP+ +E
Sbjct:    8 LNVADNSGARKLMCIQILGASNR----KYAHIGDIIIAVVKEAIPNMPLKKSEVVRAVVVRTCKELKRKNGTIIQFDDNAAVIINQEGNPKGTRVFGPVARE 105          
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RL14_RENSM (50S ribosomal protein L14 OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=rplN PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.740e-13
Identity = 45/102 (44.12%), Postives = 62/102 (60.78%), Query Frame = 3
Query:   87 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 383
            ADNTGAK +  I V G  GR      A +GD+++ATVK   P    K   V+ AVIVR +K  RR DG ++ F++NA VI+   G+ +G+ I GP+G+E  D
Sbjct:   11 ADNTGAKEILAIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVIVRTKKERRRADGSYIKFDENAAVILKNDGDPRGTRIFGPVGRELRD 108          
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RL14_FUSNN (50S ribosomal protein L14 OS=Fusobacterium nucleatum subsp. nucleatum GN=rplN PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.740e-13
Identity = 44/102 (43.14%), Postives = 63/102 (61.76%), Query Frame = 3
Query:   78 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 374
            +N ADN+GAK L +I V G  G   R     +GD+V+A+VK+  P    K   ++ AVIVR RK  RR DG ++ F+DNAGV++N   E + + I GP+ +E
Sbjct:    8 LNVADNSGAKKLMVIRVLG--GSRKRFGK--IGDIVVASVKEAIPGGNVKKGDIVKAVIVRTRKETRRDDGSYIKFDDNAGVVINNNNEPRATRIFGPVARE 105          
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RL14_DESVV (50S ribosomal protein L14 OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=rplN PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.740e-13
Identity = 45/108 (41.67%), Postives = 64/108 (59.26%), Query Frame = 3
Query:   60 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 374
            + V +T+  ADN+GAK +  I V G   R      A VGD++M +VK+  P  + K   VM AVIVR  K  RR DG ++ F+ NA V++N +GE  G+ I GP+ +E
Sbjct:    2 IQVESTLQVADNSGAKKVACIKVLGGSHRRY----ATVGDIIMVSVKEAMPHCKVKKGDVMQAVIVRTAKEVRRADGSYIKFDSNAAVLLNKQGEPVGTRIFGPVARE 105          
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RL14_DESVH (50S ribosomal protein L14 OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=rplN PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.740e-13
Identity = 45/108 (41.67%), Postives = 64/108 (59.26%), Query Frame = 3
Query:   60 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 374
            + V +T+  ADN+GAK +  I V G   R      A VGD++M +VK+  P  + K   VM AVIVR  K  RR DG ++ F+ NA V++N +GE  G+ I GP+ +E
Sbjct:    2 IQVESTLQVADNSGAKKVACIKVLGGSHRRY----ATVGDIIMVSVKEAMPHCKVKKGDVMQAVIVRTAKEVRRADGSYIKFDSNAAVLLNKQGEPVGTRIFGPVARE 105          
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RL14_CHLP8 (50S ribosomal protein L14 OS=Chlorobaculum parvum (strain NCIB 8327) GN=rplN PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.740e-13
Identity = 44/102 (43.14%), Postives = 62/102 (60.78%), Query Frame = 3
Query:   87 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 383
            ADN+GAK +  I V G  GR      A +GD +M TVK   P+    +K V  AV+VR  K  RRKDG ++ F++NA V++N +GE +G+ I GP+ +E  D
Sbjct:   11 ADNSGAKKVRCIHVFGGTGRRY----AALGDQIMVTVKAAVPNGVVKKKDVCKAVVVRCAKEQRRKDGSYIRFDENAVVLLNAQGEPRGTRIFGPVARELRD 108          
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RL14_ARTS2 (50S ribosomal protein L14 OS=Arthrobacter sp. (strain FB24) GN=rplN PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.740e-13
Identity = 45/102 (44.12%), Postives = 62/102 (60.78%), Query Frame = 3
Query:   87 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 383
            ADNTGAK +  I V G  GR      A +GD+++ATVK   P    K   V+ AVIVR +K  RR DG ++ F++NA VI+   G+ +G+ I GP+G+E  D
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVIVRTKKERRRADGSYIKFDENAAVILKNDGDPRGTRIFGPVGRELRD 108          
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RL14_ARTCA (50S ribosomal protein L14 OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=rplN PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.740e-13
Identity = 45/102 (44.12%), Postives = 62/102 (60.78%), Query Frame = 3
Query:   87 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 383
            ADNTGAK +  I V G  GR      A +GD+++ATVK   P    K   V+ AVIVR +K  RR DG ++ F++NA VI+   G+ +G+ I GP+G+E  D
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVIVRTKKERRRADGSYIKFDENAAVILKNDGDPRGTRIFGPVGRELRD 108          
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RL14_ARTAT (50S ribosomal protein L14 OS=Arthrobacter aurescens (strain TC1) GN=rplN PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.740e-13
Identity = 45/102 (44.12%), Postives = 62/102 (60.78%), Query Frame = 3
Query:   87 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 383
            ADNTGAK +  I V G  GR      A +GD+++ATVK   P    K   V+ AVIVR +K  RR DG ++ F++NA VI+   G+ +G+ I GP+G+E  D
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVIVRTKKERRRADGSYIKFDENAAVILKNDGDPRGTRIFGPVGRELRD 108          
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RK14_SACOF (50S ribosomal protein L14, chloroplastic OS=Saccharum officinarum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.740e-13
Identity = 43/119 (36.13%), Postives = 71/119 (59.66%), Query Frame = 3
Query:   78 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 422
            +N ADN+GA+ L  I V G  G       A +GD+++A +K   P +   R +V+ AVIVR RK ++  DG+ + ++DNA VI++ KG  KG+ + G + +E  +L + +I S A  ++
Sbjct:    8 LNVADNSGARKLMCIRVIGAAGNQRY---ARIGDVIIAVIKDAVPQMPLERSEVIRAVIVRTRKEFKGDDGIIIRYDDNAAVIIDQKGNPKGTRVFGAVAEELRELNYTKIVSLAPEVL 123          
The following BLAST results are available for this feature:
BLAST of CF832199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 440
Match NameE-valueIdentityDescription
RK14_PHYPA2.098e-1338.2450S ribosomal protein L14, chloroplastic OS=Physco... [more]
RL14_RENSM2.740e-1344.1250S ribosomal protein L14 OS=Renibacterium salmoni... [more]
RL14_FUSNN2.740e-1343.1450S ribosomal protein L14 OS=Fusobacterium nucleat... [more]
RL14_DESVV2.740e-1341.6750S ribosomal protein L14 OS=Desulfovibrio vulgari... [more]
RL14_DESVH2.740e-1341.6750S ribosomal protein L14 OS=Desulfovibrio vulgari... [more]
RL14_CHLP82.740e-1343.1450S ribosomal protein L14 OS=Chlorobaculum parvum ... [more]
RL14_ARTS22.740e-1344.1250S ribosomal protein L14 OS=Arthrobacter sp. (str... [more]
RL14_ARTCA2.740e-1344.1250S ribosomal protein L14 OS=Arthrobacter chloroph... [more]
RL14_ARTAT2.740e-1344.1250S ribosomal protein L14 OS=Arthrobacter aurescen... [more]
RK14_SACOF2.740e-1336.1350S ribosomal protein L14, chloroplastic OS=Saccha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01H16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01H16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832199 ID=CF832199; Name=CF832199; organism=Citrus sinensis; type=EST; length=660bp
CAATGTCGAAGCGAGGAAGGGGAGGGTCGGCGGGGAACAAGTTCAGGATG
TCGCTGGGTCTGCCGGTGGCGGCGACGGTGAACTGTGCCGACAACACGGG
TGCGAAGAATCTCTACATAATATCGGTGAAAGGAATCAAAGGGAGACTCA
ACCGACTTCCGTCGGCCTGCGTCGGCGACATGGTCATGGCCACTGTCAAG
AAAGGAAAGCCCGATCTGAGGAAAAAGGTCATGCCAGCTGTCATCGTCCG
CCAGCGCAAGCCCTGGCGCCGAAAGGACGGCGTCTTCATGTACTTTGAAG
ATAATGCTGGTGTCATCGTCAACCCTAAGGGCGAAATGAAAGGATCTGCC
ATAACTGGACCAATTGGTAAGGAGTGTGCTGATCTGTGGCCAAGAATTGC
AAGTGCTGCCAATGCTATTGTCTGAGTGGGGGTTTTAAGGGATTTTTTTG
GCCTTAGTTTGGTAGGTGACCGTAGGGTCTGTTAATATCATTGGGATCAT
TTCCTACTGATGAGTGTTGTGGTTGTTCCTCTATTGGCTATTGCTAGACA
GATACAAGGAGATTTCAGATTTTCTACCTATTCTAATTGTAGAAGAATTT
AATTTGTGTTTAATTTCCAAGAATTTTGTTCTTTTAAGAGAATATTGATT
TTGTTCTAAA
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