CF832199

Overview
NameCF832199
Unique NameCF832199
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1877 contig Csv1_Contig1877:66..725. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RL14_METS3 (50S ribosomal protein L14P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.310e-33
Identity = 66/125 (52.80%), Postives = 92/125 (73.60%), Query Frame = 3
Query:   48 MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 422
            +S  LP+ AT+ C DNTGA+ + IISVKG KG   RL  A VGD+V+A+VKKG  D+R++V+ AV++RQ+K + R DG+ + FEDNA VI+ P+G +KGS + GP+ KE AD WP + SAA+ +V
Sbjct:    8 VSKALPIGATLQCVDNTGAREIQIISVKGFKGVRRRLDVAGVGDLVVASVKKGTADMRREVVNAVVIRQKKEYMRADGLRVKFEDNAAVIITPEGILKGSEVRGPVAKEAADRWPSVGSAASILV 132          
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RL14_METJA (50S ribosomal protein L14P OS=Methanocaldococcus jannaschii GN=rpl14p PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.442e-32
Identity = 70/121 (57.85%), Postives = 85/121 (70.25%), Query Frame = 3
Query:   60 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 422
            LPV A   CADNTGAK + II+V+  KG   RLP+A VGDMV+ TVKKG P++RK+V+PAV++RQRK  RR DG  + F DNA VIV P G  KGS I GP+ KE A+ WP IA  A  I+
Sbjct:   12 LPVGARCICADNTGAKEVEIIAVRNYKGVARRLPTARVGDMVIVTVKKGTPEMRKQVLPAVVIRQRKEIRRPDGTRVKFADNAVVIVTPDGNPKGSDIKGPVAKEAAERWPGIARIAKIII 132          
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RL14_PYRFU (50S ribosomal protein L14P OS=Pyrococcus furiosus GN=rpl14p PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.708e-31
Identity = 73/141 (51.77%), Postives = 97/141 (68.79%), Query Frame = 3
Query:    3 MSKRGRGGSAG-NKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 422
            M+K+G G + G +  R +  LPV A +  ADN+GAK + II V    G   RL SA VGDMV+ATVKKG+PD+R +V+ AVI+RQRK +RR DG+ + FEDNA VIV P+G  +G+ I GP+ +E A+ W RI S A+ IV
Sbjct:    1 MAKKGAGATRGVSAVRPTRALPVGAYLTVADNSGAKVIQIIGVVEYHGTRRRLASAGVGDMVVATVKKGRPDMRHQVVRAVIIRQRKEYRRLDGMRVKFEDNAAVIVTPEGVPRGTEIRGPVAREAAERWVRIGSIASIIV 141          
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RL14_PYRHO (50S ribosomal protein L14P OS=Pyrococcus horikoshii GN=rpl14p PE=3 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 4.970e-31
Identity = 70/141 (49.65%), Postives = 97/141 (68.79%), Query Frame = 3
Query:    3 MSKRGRGGSAG-NKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 422
            M+K+G G + G +  R +  +P+ A +  ADN+GAK + +I V    G   RL SA VGDMV+ATVKKG+PD+R +V+ AVI+RQRK +RR DG+ + FEDNA VIV P+G  +G+ I GP+ +E A+ W RI S A+ IV
Sbjct:    1 MAKKGAGATRGISPVRPTRAIPIGAYLTVADNSGAKVIQVIGVVEYHGTRRRLASAGVGDMVVATVKKGRPDMRHQVVRAVIIRQRKEYRRLDGMRVKFEDNAAVIVTPEGVPRGTEIRGPVAREAAEKWVRIGSIASIIV 141          
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RL14_PYRAB (50S ribosomal protein L14P OS=Pyrococcus abyssi GN=rpl14p PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.970e-31
Identity = 71/141 (50.35%), Postives = 96/141 (68.09%), Query Frame = 3
Query:    3 MSKRGRGGSAG-NKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 422
            M+K+G G + G    R +  +PV A +  ADN+GAK + +I V    G   RL SA VGDMV+ATVKKG+PD+R +V+ AVI+RQRK +RR DG+ + FEDNA VIV P+G  +G+ I GP+ +E A+ W RI S A+ IV
Sbjct:    1 MAKKGAGATRGITPVRPTRAIPVGAYLTVADNSGAKVIQVIGVVEYHGTRRRLASAGVGDMVVATVKKGRPDMRHQVVRAVIIRQRKEYRRLDGMRIKFEDNAAVIVTPEGVPRGTEIRGPVAREAAERWVRIGSIASIIV 141          
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RL14_METVS (50S ribosomal protein L14P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.491e-31
Identity = 64/120 (53.33%), Postives = 85/120 (70.83%), Query Frame = 3
Query:   60 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 419
            LP  A + CADNTGAK L +I+VK   G + RLPSA VG +V  +VKKG P++RK+V+PA+I+RQ+K ++R DG  + FEDNA VIV P+G  KGS I GP+ KE A+ WP ++  A  I
Sbjct:   12 LPNGARLVCADNTGAKELEVIAVKNYSGTVRRLPSAGVGQIVFVSVKKGTPEMRKQVLPAIIIRQKKEYKRADGTRVKFEDNAAVIVTPEGTPKGSDIKGPVSKEAAERWPGVSRLAKII 131          
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RL14_METVA (50S ribosomal protein L14P OS=Methanococcus vannielii GN=rpl14p PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.491e-31
Identity = 64/120 (53.33%), Postives = 85/120 (70.83%), Query Frame = 3
Query:   60 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 419
            LP  A + CADNTGAK L +I+VK   G + RLPSA VG +V  +VKKG P++RK+V+PA+I+RQ+K ++R DG  + FEDNA VIV P+G  KGS I GP+ KE A+ WP ++  A  I
Sbjct:   12 LPNGARLVCADNTGAKELEVIAVKNYSGTVRRLPSAGVGQIVFVSVKKGTPEMRKQVLPAIIIRQKKEYKRADGTRVKFEDNAAVIVTPEGTPKGSDIKGPVSKEAAERWPGVSRLAKII 131          
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RL14_CENSY (50S ribosomal protein L14P OS=Cenarchaeum symbiosum GN=rpl14p PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.491e-31
Identity = 72/140 (51.43%), Postives = 97/140 (69.29%), Query Frame = 3
Query:   12 RGRGGSAG-NKFR--MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 422
            R RG + G  +FR  ++  LPV A V CADN+GAK L II V+  K R++RLP+A VGD V   VKKG  +LRK+V  AVI+RQ+ P RR +GV + FEDNA V+  P+GEMKG+ I GP+  E ++ WPR+A+ A+ +V
Sbjct:    5 RSRGKAKGVEEFRPYVTRALPVGARVTCADNSGAKVLEIIMVQKAKTRVSRLPAAAVGDYVNVVVKKGPAELRKQVHGAVIIRQKYPVRRLNGVRVAFEDNAAVLTTPEGEMKGTDIKGPVAAEASEKWPRLANLASMVV 144          
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RL14_KORCO (50S ribosomal protein L14P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.477e-31
Identity = 67/130 (51.54%), Postives = 88/130 (67.69%), Query Frame = 3
Query:   33 GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 422
            G K +++ GLPV A + CADNTGAK L II V G KGR +R+P+A VGDMV   VK+GK DL  K   A++VRQR P+RRK+G ++ FEDNA V+VN  G  +GS   GPI KE  + WP ++  +  +V
Sbjct:   12 GVKPKITHGLPVRARLKCADNTGAKLLMIIGVHGYKGRKDRVPTASVGDMVTVVVKRGKYDLMHKPFKAIVVRQRMPYRRKNGQWVVFEDNAAVLVNDDGTPRGSEFRGPIAKEAIERWPSLSVISAQVV 141          
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RL14_SULTO (50S ribosomal protein L14P OS=Sulfolobus tokodaii GN=rpl14p PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.107e-30
Identity = 66/130 (50.77%), Postives = 89/130 (68.46%), Query Frame = 3
Query:   33 GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 422
            G++  ++ GL    TV  ADN+GAK   II + G KG L R+P A + D+VM +V+KG P++RK+   AVIVRQR P+RR DG ++ FEDNA VIVNP G  KG+ I GPI KE A+ WP++AS A  ++
Sbjct:   12 GSRKGLTPGLQHYTTVTVADNSGAKEAVIIGIYGYKGVLRRIPFANIADLVMVSVRKGTPEVRKQKFKAVIVRQRMPFRRPDGTWIAFEDNAVVIVNPDGTPKGTEIRGPIAKEAAERWPKVASIATMVI 141          
The following BLAST results are available for this feature:
BLAST of CF832199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 440
Match NameE-valueIdentityDescription
RL14_METS35.310e-3352.8050S ribosomal protein L14P OS=Methanobrevibacter s... [more]
RL14_METJA3.442e-3257.8550S ribosomal protein L14P OS=Methanocaldococcus j... [more]
RL14_PYRFU1.708e-3151.7750S ribosomal protein L14P OS=Pyrococcus furiosus ... [more]
RL14_PYRHO4.970e-3149.6550S ribosomal protein L14P OS=Pyrococcus horikoshi... [more]
RL14_PYRAB4.970e-3150.3550S ribosomal protein L14P OS=Pyrococcus abyssi GN... [more]
RL14_METVS6.491e-3153.3350S ribosomal protein L14P OS=Methanococcus vannie... [more]
RL14_METVA6.491e-3153.3350S ribosomal protein L14P OS=Methanococcus vannie... [more]
RL14_CENSY6.491e-3151.4350S ribosomal protein L14P OS=Cenarchaeum symbiosu... [more]
RL14_KORCO8.477e-3151.5450S ribosomal protein L14P OS=Korarchaeum cryptofi... [more]
RL14_SULTO1.107e-3050.7750S ribosomal protein L14P OS=Sulfolobus tokodaii ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01H16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01H16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832199 ID=CF832199; Name=CF832199; organism=Citrus sinensis; type=EST; length=660bp
CAATGTCGAAGCGAGGAAGGGGAGGGTCGGCGGGGAACAAGTTCAGGATG
TCGCTGGGTCTGCCGGTGGCGGCGACGGTGAACTGTGCCGACAACACGGG
TGCGAAGAATCTCTACATAATATCGGTGAAAGGAATCAAAGGGAGACTCA
ACCGACTTCCGTCGGCCTGCGTCGGCGACATGGTCATGGCCACTGTCAAG
AAAGGAAAGCCCGATCTGAGGAAAAAGGTCATGCCAGCTGTCATCGTCCG
CCAGCGCAAGCCCTGGCGCCGAAAGGACGGCGTCTTCATGTACTTTGAAG
ATAATGCTGGTGTCATCGTCAACCCTAAGGGCGAAATGAAAGGATCTGCC
ATAACTGGACCAATTGGTAAGGAGTGTGCTGATCTGTGGCCAAGAATTGC
AAGTGCTGCCAATGCTATTGTCTGAGTGGGGGTTTTAAGGGATTTTTTTG
GCCTTAGTTTGGTAGGTGACCGTAGGGTCTGTTAATATCATTGGGATCAT
TTCCTACTGATGAGTGTTGTGGTTGTTCCTCTATTGGCTATTGCTAGACA
GATACAAGGAGATTTCAGATTTTCTACCTATTCTAATTGTAGAAGAATTT
AATTTGTGTTTAATTTCCAAGAATTTTGTTCTTTTAAGAGAATATTGATT
TTGTTCTAAA
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