CF832199

Overview
NameCF832199
Unique NameCF832199
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RL14_BIFLI (50S ribosomal protein L14 OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.713e-11
Identity = 47/119 (39.50%), Postives = 69/119 (57.98%), Query Frame = 3
Query:   78 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD-LWPRIASAANAIV 422
            ++ ADNTGAK L  I V G  G   R   A +GD+++A+VK   P    K   V+ AV+VR  K  RR DG ++ F++NA VI+    E KG+ I GP+G+E  +  + +I S A  ++
Sbjct:    8 LHVADNTGAKELLAIRVLG--GSKRRY--AGIGDVIVASVKDAIPGGSVKKGDVVKAVVVRTVKESRRADGSYIKFDENAAVILGSGREPKGTRIFGPVGRELREHKFMKIVSLAPEVI 122          
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RL14_BIFLD (50S ribosomal protein L14 OS=Bifidobacterium longum (strain DJO10A) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.713e-11
Identity = 47/119 (39.50%), Postives = 69/119 (57.98%), Query Frame = 3
Query:   78 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD-LWPRIASAANAIV 422
            ++ ADNTGAK L  I V G  G   R   A +GD+++A+VK   P    K   V+ AV+VR  K  RR DG ++ F++NA VI+    E KG+ I GP+G+E  +  + +I S A  ++
Sbjct:    8 LHVADNTGAKELLAIRVLG--GSKRRY--AGIGDVIVASVKDAIPGGSVKKGDVVKAVVVRTVKESRRADGSYIKFDENAAVILGSGREPKGTRIFGPVGRELREHKFMKIVSLAPEVI 122          
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RL14_BACWK (50S ribosomal protein L14 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.713e-11
Identity = 39/102 (38.24%), Postives = 59/102 (57.84%), Query Frame = 3
Query:   87 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 383
            ADN+GA+ L  I V G  GR      A +GD+++ATVK+  P     +  V+ AV+VR +   RR DG ++ F++NA VI+      +G+ I GP+ +E  D
Sbjct:   11 ADNSGARELLTIKVLGGSGR----KYAYIGDIIVATVKQATPGGVVKKGDVVKAVVVRTKSGARRPDGSYIKFDENAAVIIKDDKSPRGTRIFGPVARELRD 108          
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RL14_AYWBP (50S ribosomal protein L14 OS=Aster yellows witches'-broom phytoplasma (strain AYWB) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.713e-11
Identity = 42/114 (36.84%), Postives = 69/114 (60.53%), Query Frame = 3
Query:   87 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK-VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD-LWPRIASAANAIV 422
            ADN+GAK + +I + G   R +      +GD+V+ TVK G   ++K  V+ AVIVR +K  RRK+G ++ F+DNA V++     + G+ I GP+ +E +D  + +I S A  ++
Sbjct:   11 ADNSGAKEVLVIGILGGTRRSH----VNIGDIVVVTVKSGSGTVKKHDVLKAVIVRTKKGLRRKNGSYIKFDDNAVVLLKEDLNIIGTRIFGPVVRELSDKKFSKIVSLAQLVL 120          
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RK14_VITVI (50S ribosomal protein L14, chloroplastic OS=Vitis vinifera GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.713e-11
Identity = 42/119 (35.29%), Postives = 71/119 (59.66%), Query Frame = 3
Query:   78 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 422
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P++   R +V+ AVIVR  K  +R +G+ + ++DNA VI++ +G  KG+ I G I +E   L + +I S A  ++
Sbjct:    8 LNVADNSGARELMCIRIIGTSNRRY----AHIGDVIVAVIKEVVPNMPLERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIVRELRQLNFTKIVSLAPEVL 122          
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RK14_SOYBN (50S ribosomal protein L14, chloroplastic OS=Glycine max GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.713e-11
Identity = 41/119 (34.45%), Postives = 69/119 (57.98%), Query Frame = 3
Query:   78 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 422
            +N ADN+GA+ L  I + G   R      A +GD+V+A +K+  P+    R +V+ AVIVR  K  +R +G+ + ++DNA V+++ +G  KG+ I   I +E   L + +I S A  ++
Sbjct:    8 LNVADNSGARELMCIRILGASNRRY----AYIGDIVVAVIKQAVPNTNLERSEVIRAVIVRTCKELKRSNGIIIQYDDNAAVVIDQEGNPKGTRIFCAIARELRQLNFTKIVSLAPEVL 122          
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RK14_PHAVU (50S ribosomal protein L14, chloroplastic OS=Phaseolus vulgaris GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.713e-11
Identity = 41/119 (34.45%), Postives = 69/119 (57.98%), Query Frame = 3
Query:   78 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 422
            +N ADN+GA+ L  I + G   R      A +GD+V+A +K+  P+    R +V+ AVIVR  K  +R +G+ + ++DNA V+++ +G  KG+ I   I +E   L + +I S A  ++
Sbjct:    8 LNVADNSGARKLMCIRILGASNRRY----AYIGDIVVAVIKQAVPNTNLERSEVIRAVIVRTCKQLKRSNGIIIQYDDNAAVVIDQEGNPKGTRIFCAIARELRQLNFTKIVSLAPEVL 122          
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RK14_CERDE (50S ribosomal protein L14, chloroplastic OS=Ceratophyllum demersum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.713e-11
Identity = 39/119 (32.77%), Postives = 70/119 (58.82%), Query Frame = 3
Query:   78 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 422
            +N ADN+GA+ L  I + G          A +GD+++A +K+  P++   R +V+ AVIVR  K  +R +G+ + ++DNA V+++ +G  KG+ + G I +E   L + +I S A  ++
Sbjct:    8 LNVADNSGARELMCIRILGASNHRY----AHIGDVIVAVIKEAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRQLNFAKIVSLAPEVL 122          
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RK14_ANEMR (50S ribosomal protein L14, plastid OS=Aneura mirabilis GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.713e-11
Identity = 38/101 (37.62%), Postives = 59/101 (58.42%), Query Frame = 3
Query:   81 NCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 374
            N ADN+GA+ L  I V G   R      A +GD+++A VK+  P++   + +++ AVI R RK   R DG  + F+DNA V +N +   +G+ + GPI +E
Sbjct:    9 NVADNSGAQKLMCIRVTGTNDR----EYAGIGDVIVAVVKEAVPNMPTKKSEIVRAVIARTRKEIGRTDGSVIKFDDNAAVTINRENNPRGTRVFGPIARE 105          
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RL14_UREU1 (50S ribosomal protein L14 OS=Ureaplasma urealyticum serovar 10 (strain ATCC 33699 / Western) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.461e-11
Identity = 45/116 (38.79%), Postives = 68/116 (58.62%), Query Frame = 3
Query:   87 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 422
            ADNTGAK + +I V G  G   R  S  VGD+V+ +VKK  P     + ++  AVIVR +K  RR+ G+ + F++NA V++      +GS I GP+ +E  D  + +IAS A  ++
Sbjct:   11 ADNTGAKEVGVIKVLG--GSKKRYAS--VGDIVVVSVKKATPAGLIAKGQMAKAVIVRTKKSIRRESGLLIRFDENACVLIKEDKTPRGSRIFGPVAREIRDRGYTKIASLAPEVL 122          
The following BLAST results are available for this feature:
BLAST of CF832199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 440
Match NameE-valueIdentityDescription
RL14_BIFLI5.713e-1139.5050S ribosomal protein L14 OS=Bifidobacterium longu... [more]
RL14_BIFLD5.713e-1139.5050S ribosomal protein L14 OS=Bifidobacterium longu... [more]
RL14_BACWK5.713e-1138.2450S ribosomal protein L14 OS=Bacillus weihenstepha... [more]
RL14_AYWBP5.713e-1136.8450S ribosomal protein L14 OS=Aster yellows witches... [more]
RK14_VITVI5.713e-1135.2950S ribosomal protein L14, chloroplastic OS=Vitis ... [more]
RK14_SOYBN5.713e-1134.4550S ribosomal protein L14, chloroplastic OS=Glycin... [more]
RK14_PHAVU5.713e-1134.4550S ribosomal protein L14, chloroplastic OS=Phaseo... [more]
RK14_CERDE5.713e-1132.7750S ribosomal protein L14, chloroplastic OS=Cerato... [more]
RK14_ANEMR5.713e-1137.6250S ribosomal protein L14, plastid OS=Aneura mirab... [more]
RL14_UREU17.461e-1138.7950S ribosomal protein L14 OS=Ureaplasma urealyticu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01H16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01H16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832199 ID=CF832199; Name=CF832199; organism=Citrus sinensis; type=EST; length=660bp
CAATGTCGAAGCGAGGAAGGGGAGGGTCGGCGGGGAACAAGTTCAGGATG
TCGCTGGGTCTGCCGGTGGCGGCGACGGTGAACTGTGCCGACAACACGGG
TGCGAAGAATCTCTACATAATATCGGTGAAAGGAATCAAAGGGAGACTCA
ACCGACTTCCGTCGGCCTGCGTCGGCGACATGGTCATGGCCACTGTCAAG
AAAGGAAAGCCCGATCTGAGGAAAAAGGTCATGCCAGCTGTCATCGTCCG
CCAGCGCAAGCCCTGGCGCCGAAAGGACGGCGTCTTCATGTACTTTGAAG
ATAATGCTGGTGTCATCGTCAACCCTAAGGGCGAAATGAAAGGATCTGCC
ATAACTGGACCAATTGGTAAGGAGTGTGCTGATCTGTGGCCAAGAATTGC
AAGTGCTGCCAATGCTATTGTCTGAGTGGGGGTTTTAAGGGATTTTTTTG
GCCTTAGTTTGGTAGGTGACCGTAGGGTCTGTTAATATCATTGGGATCAT
TTCCTACTGATGAGTGTTGTGGTTGTTCCTCTATTGGCTATTGCTAGACA
GATACAAGGAGATTTCAGATTTTCTACCTATTCTAATTGTAGAAGAATTT
AATTTGTGTTTAATTTCCAAGAATTTTGTTCTTTTAAGAGAATATTGATT
TTGTTCTAAA
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