CF832199

Overview
NameCF832199
Unique NameCF832199
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RK14_LEPVR (50S ribosomal protein L14, chloroplastic OS=Lepidium virginicum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.744e-11
Identity = 40/119 (33.61%), Postives = 69/119 (57.98%), Query Frame = 3 
Query:   78 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 422
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P+    R +V+ AVIVR  K  +R +G  + ++DNA V+++ +G  KG+ + G I +E   L + +I S A  ++
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAIPNTPLERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RK14_LACSA (50S ribosomal protein L14, chloroplastic OS=Lactuca sativa GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.744e-11
Identity = 36/102 (35.29%), Postives = 62/102 (60.78%), Query Frame = 3 
Query:   78 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 374
            +N ADN+GA+ L  I + G   R      A +GD+++A +K   P++   R +V+ AVIVR  K  +R +G+ + ++DNA V+++ +G  KG+ + G I +E
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKDAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARE 105
[Close]
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RK14_HELAN (50S ribosomal protein L14, chloroplastic OS=Helianthus annuus GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.744e-11
Identity = 36/102 (35.29%), Postives = 62/102 (60.78%), Query Frame = 3 
Query:   78 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 374
            +N ADN+GA+ L  I + G   R      A +GD+++A +K   P++   R +V+ AVIVR  K  +R +G+ + ++DNA V+++ +G  KG+ + G I +E
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKDAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARE 105
[Close]
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RK14_CRUWA (50S ribosomal protein L14, chloroplastic OS=Crucihimalaya wallichii GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.744e-11
Identity = 40/119 (33.61%), Postives = 69/119 (57.98%), Query Frame = 3 
Query:   78 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 422
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P+    R +V+ AVIVR  K  +R +G  + ++DNA V+++ +G  KG+ + G I +E   L + +I S A  ++
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAIPNTPLERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RK14_CHAGL (50S ribosomal protein L14, chloroplastic OS=Chaetosphaeridium globosum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.744e-11
Identity = 38/119 (31.93%), Postives = 69/119 (57.98%), Query Frame = 3 
Query:   78 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 422
            +N ADN+GA+ +  I + G   +        +GD ++  VK+  P++   + +V+ AVIVR  K  +RK+G  + F++NA VI+N +G  +G+ I GP+ +E  +  + +I S A  ++
Sbjct:    8 LNVADNSGARKIMCIRILGGSNK----KYGHIGDTIIGVVKEAIPNMTLKKSEVVRAVIVRTCKELKRKNGTILRFDENAAVIINQEGNPRGTRIFGPVARELREANFTKIVSLAPEVL 122
[Close]
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RK14_CAPBU (50S ribosomal protein L14, chloroplastic OS=Capsella bursa-pastoris GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.744e-11
Identity = 40/119 (33.61%), Postives = 69/119 (57.98%), Query Frame = 3 
Query:   78 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 422
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P+    R +V+ AVIVR  K  +R +G  + ++DNA V+++ +G  KG+ + G I +E   L + +I S A  ++
Sbjct:    8 LNVADNSGARKLMCIRIIGASNRRY----AHIGDVIVAVIKEAIPNTPLERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RK14_BARVE (50S ribosomal protein L14, chloroplastic OS=Barbarea verna GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.744e-11
Identity = 40/119 (33.61%), Postives = 69/119 (57.98%), Query Frame = 3 
Query:   78 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 422
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P+    R +V+ AVIVR  K  +R +G  + ++DNA V+++ +G  KG+ + G I +E   L + +I S A  ++
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAIPNTPLERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RK14_ARATH (50S ribosomal protein L14, chloroplastic OS=Arabidopsis thaliana GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.744e-11
Identity = 40/119 (33.61%), Postives = 69/119 (57.98%), Query Frame = 3 
Query:   78 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 422
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P+    R +V+ AVIVR  K  +R +G  + ++DNA V+++ +G  KG+ + G I +E   L + +I S A  ++
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAIPNTPLERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RK14_AETGR (50S ribosomal protein L14, chloroplastic OS=Aethionema grandiflora GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.744e-11
Identity = 40/119 (33.61%), Postives = 69/119 (57.98%), Query Frame = 3 
Query:   78 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 422
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P+    R +V+ AVIVR  K  +R +G  + ++DNA V+++ +G  KG+ + G I +E   L + +I S A  ++
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAIPNTPLERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RK14_AETCO (50S ribosomal protein L14, chloroplastic OS=Aethionema cordifolium GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.744e-11
Identity = 40/119 (33.61%), Postives = 69/119 (57.98%), Query Frame = 3 
Query:   78 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 422
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P+    R +V+ AVIVR  K  +R +G  + ++DNA V+++ +G  KG+ + G I +E   L + +I S A  ++
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAIPNTPLERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPEVL 122
The following BLAST results are available for this feature:
BLAST of CF832199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 440
Match NameE-valueIdentityDescription
RK14_LEPVR9.744e-1133.6150S ribosomal protein L14, chloroplastic OS=Lepidi... [more]
RK14_LACSA9.744e-1135.2950S ribosomal protein L14, chloroplastic OS=Lactuc... [more]
RK14_HELAN9.744e-1135.2950S ribosomal protein L14, chloroplastic OS=Helian... [more]
RK14_CRUWA9.744e-1133.6150S ribosomal protein L14, chloroplastic OS=Crucih... [more]
RK14_CHAGL9.744e-1131.9350S ribosomal protein L14, chloroplastic OS=Chaeto... [more]
RK14_CAPBU9.744e-1133.6150S ribosomal protein L14, chloroplastic OS=Capsel... [more]
RK14_BARVE9.744e-1133.6150S ribosomal protein L14, chloroplastic OS=Barbar... [more]
RK14_ARATH9.744e-1133.6150S ribosomal protein L14, chloroplastic OS=Arabid... [more]
RK14_AETGR9.744e-1133.6150S ribosomal protein L14, chloroplastic OS=Aethio... [more]
RK14_AETCO9.744e-1133.6150S ribosomal protein L14, chloroplastic OS=Aethio... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01H16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01H16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832199 ID=CF832199; Name=CF832199; organism=Citrus sinensis; type=EST; length=660bp
CAATGTCGAAGCGAGGAAGGGGAGGGTCGGCGGGGAACAAGTTCAGGATG
TCGCTGGGTCTGCCGGTGGCGGCGACGGTGAACTGTGCCGACAACACGGG
TGCGAAGAATCTCTACATAATATCGGTGAAAGGAATCAAAGGGAGACTCA
ACCGACTTCCGTCGGCCTGCGTCGGCGACATGGTCATGGCCACTGTCAAG
AAAGGAAAGCCCGATCTGAGGAAAAAGGTCATGCCAGCTGTCATCGTCCG
CCAGCGCAAGCCCTGGCGCCGAAAGGACGGCGTCTTCATGTACTTTGAAG
ATAATGCTGGTGTCATCGTCAACCCTAAGGGCGAAATGAAAGGATCTGCC
ATAACTGGACCAATTGGTAAGGAGTGTGCTGATCTGTGGCCAAGAATTGC
AAGTGCTGCCAATGCTATTGTCTGAGTGGGGGTTTTAAGGGATTTTTTTG
GCCTTAGTTTGGTAGGTGACCGTAGGGTCTGTTAATATCATTGGGATCAT
TTCCTACTGATGAGTGTTGTGGTTGTTCCTCTATTGGCTATTGCTAGACA
GATACAAGGAGATTTCAGATTTTCTACCTATTCTAATTGTAGAAGAATTT
AATTTGTGTTTAATTTCCAAGAATTTTGTTCTTTTAAGAGAATATTGATT
TTGTTCTAAA
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