CF832199

Overview
NameCF832199
Unique NameCF832199
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1877 contig Csv1_Contig1877:66..725. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RL14_THEPD (50S ribosomal protein L14P OS=Thermofilum pendens (strain Hrk 5) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.075e-29
Identity = 64/142 (45.07%), Postives = 98/142 (69.01%), Query Frame = 3
Query:    3 MSKRGRGGSAGNKFRMSL--GLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 422
            M+KRG   + G  +R+ L  G+ + + V  ADN+GA    +I V   K    R+P A VGD+V+ +++ GKP+LRK+VM A+++RQR+P+RR DG ++ FEDNA VI+ P+GE KG+ I GP+ KE A+ WP++++ A+ IV
Sbjct:    1 MAKRGPK-TVGVSYRLGLTPGVFMESLVKVADNSGATLAKVIGVPHYKAVWRRIPGAAVGDIVIVSIRAGKPELRKQVMRAIVIRQRRPYRRPDGSWIAFEDNAVVIITPEGEPKGTEIRGPLAKEAAERWPKLSAMASIIV 141          
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RL14_SULAC (50S ribosomal protein L14P OS=Sulfolobus acidocaldarius GN=rpl14p PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.934e-29
Identity = 60/117 (51.28%), Postives = 83/117 (70.94%), Query Frame = 3
Query:   72 ATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 422
            ++V  ADN+GAK   II + G +G L R+P A + D+VM +V+KG PD+RK+   AVIVRQR P+RR DG ++ FEDNA VI+NP G  KG+ + GPI +E A+ WP+IAS A  ++
Sbjct:   22 SSVVVADNSGAKEAVIIGIYGYRGVLRRVPFANIADLVMVSVRKGSPDVRKQKFKAVIVRQRMPFRRPDGTWISFEDNAVVIINPDGTPKGTEVRGPIAREAAERWPKIASVATMVI 138          
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RL14_METTP (50S ribosomal protein L14P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.934e-29
Identity = 62/130 (47.69%), Postives = 90/130 (69.23%), Query Frame = 3
Query:   33 GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 422
            GNK ++   +     + CADNTGA+ L+++SVK  +G  NR P A +GDMV+ +VKKG P++RK++  AVI+RQ+K +RR DG+ + FEDNA VI +  G  KGS I GP+ +E A+ + +IAS+A  IV
Sbjct:    3 GNKAKIPRSINTGTYLECADNTGARTLFVVSVKKYRGVKNRQPCAGIGDMVVVSVKKGTPEMRKQIFNAVIIRQKKEFRRPDGLRVKFEDNAAVITDDAGVPKGSEIKGPVAREVAERFGKIASSAAIIV 132          
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RL14_CALMQ (50S ribosomal protein L14P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.309e-28
Identity = 64/144 (44.44%), Postives = 98/144 (68.06%), Query Frame = 3
Query:    3 MSKRGRGGSAGNKFRMSL--GLPVAATVNCADNTGAKNLYIISVKG--IKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 422
            M+KRG   + G  +R  L  G+ + + VN ADN+GAK + +I V G   K    R+P   VGDMV+ +V++GKP++RK+++ A++VRQR+P+RR DG ++ FEDNA VIV  +G++KG+ + GP+  E A  WP++AS A  I+
Sbjct:    1 MAKRGGPRTVGVPWRFHLTPGIFMNSLVNVADNSGAKVVKVIGVVGHYSKNVHRRIPGVSVGDMVVVSVQEGKPEMRKQILRAIVVRQRRPFRRPDGTWVAFEDNAVVIVTEEGQVKGTEVHGPVAMEAAQRWPQVASIATMII 144          
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RL14_NITMS (50S ribosomal protein L14P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.015e-28
Identity = 61/121 (50.41%), Postives = 85/121 (70.25%), Query Frame = 3
Query:   60 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 422
            +PV A + CADN+GAK L +I+V   + R +RLPSA VGD     VKKG  +LRK+V  AVI+RQ+ P RR +GV + FEDNA V++ P+GE KG+ I GP+  E ++ WPR+A+ A+ +V
Sbjct:   20 IPVGANIVCADNSGAKILEVINVPRHRTRASRLPSASVGDFCNVVVKKGPAELRKQVYGAVIIRQKYPVRRLNGVRVCFEDNAAVLITPEGETKGTDIKGPVAAEASEKWPRVANLASMVV 140          
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RL14_METBU (50S ribosomal protein L14P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.938e-28
Identity = 61/130 (46.92%), Postives = 90/130 (69.23%), Query Frame = 3
Query:   33 GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 422
            G + ++   L   A + C DNTGA+ + IISVK  +G  NR+P   +GDM + +VKKG P++RK+++ AVIVRQ+K +RR DG+ + FEDNA VIV+ KG  KG+ I GP+ +E A+ +P+I + A+ IV
Sbjct:    3 GIRSKIPRALNAGAKIECVDNTGARTVEIISVKKYRGVKNRMPKGGIGDMCVVSVKKGTPEMRKQILYAVIVRQKKEFRRPDGIRVAFEDNAVVIVDDKGIPKGTDIKGPVAREAAERFPKIGTTASMIV 132          
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RL14_HALSA (50S ribosomal protein L14P OS=Halobacterium salinarium GN=rpl14p PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.773e-28
Identity = 63/128 (49.22%), Postives = 86/128 (67.19%), Query Frame = 3
Query:   39 KFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 422
            K  ++ GL   + + CADNTGA+ L I SV G +GR NR P A +GD +  +V KG P++R++V+ AV+VRQRKP RR DG  + FEDNA VI++  GE +G+ I GPI +E A+ +  IAS A  IV
Sbjct:    5 KADITQGLEKGSLITCADNTGARELKITSVMGYQGRKNRHPKAGLGDTITVSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIIDDLGEPRGTEIKGPISREVAERYGTIASTATMIV 132          
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RL14_HALS3 (50S ribosomal protein L14P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.773e-28
Identity = 63/128 (49.22%), Postives = 86/128 (67.19%), Query Frame = 3
Query:   39 KFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 422
            K  ++ GL   + + CADNTGA+ L I SV G +GR NR P A +GD +  +V KG P++R++V+ AV+VRQRKP RR DG  + FEDNA VI++  GE +G+ I GPI +E A+ +  IAS A  IV
Sbjct:    5 KADITQGLEKGSLITCADNTGARELKITSVMGYQGRKNRHPKAGLGDTITVSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIIDDLGEPRGTEIKGPISREVAERYGTIASTATMIV 132          
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RL14_PYRCJ (50S ribosomal protein L14P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.496e-27
Identity = 66/144 (45.83%), Postives = 96/144 (66.67%), Query Frame = 3
Query:    3 MSKRGRGGSAG--NKFRMSLGLPVAATVNCADNTGAKNLYIISVKG--IKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 422
            M+KRG   + G   +F ++ G+ + + V  ADN+GAK + +I V G   K    R+P A VGDMV+  V++GKP+LRK++  A++VRQR+P+RR DG ++ FEDNA VIV P+G+ KGS I GP+  E    WP IA+ A+ +V
Sbjct:    1 MAKRGGKRTVGVPYRFHVTPGIFMNSLVPVADNSGAKLVRVIGVVGHYSKSVHRRIPGAGVGDMVVVVVREGKPELRKQIFRAIVVRQRRPYRRPDGTWVAFEDNAVVIVTPEGDPKGSEIHGPVAMEATLRWPTIANLASIVV 144          
BLAST of CF832199 vs. ExPASy Swiss-Prot
Match: RL14_PYRAE (50S ribosomal protein L14P OS=Pyrobaculum aerophilum GN=rpl14p PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.954e-27
Identity = 65/144 (45.14%), Postives = 96/144 (66.67%), Query Frame = 3
Query:    3 MSKRGRGGSAG--NKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRL--NRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 422
            M+KRG   + G   +F ++ G+ + + V  ADN+GAK + +I V G   +    R+P A VGDMV+  V++GKP+LRK++  A++VRQR+P+RR DG ++ FEDNA VIV P+G+ KGS I GP+  E    WP IA+ A+ +V
Sbjct:    1 MAKRGGKRTVGVPYRFHVTPGIFMNSLVPVADNSGAKLVRVIGVVGHYSKTVHRRIPGAGVGDMVVVVVREGKPELRKQIFRAIVVRQRRPYRRPDGTWVAFEDNAVVIVTPEGDPKGSEIHGPVAMEATLRWPTIANLASIVV 144          
The following BLAST results are available for this feature:
BLAST of CF832199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 440
Match NameE-valueIdentityDescription
RL14_THEPD6.075e-2945.0750S ribosomal protein L14P OS=Thermofilum pendens ... [more]
RL14_SULAC7.934e-2951.2850S ribosomal protein L14P OS=Sulfolobus acidocald... [more]
RL14_METTP7.934e-2947.6950S ribosomal protein L14P OS=Methanosaeta thermop... [more]
RL14_CALMQ2.309e-2844.4450S ribosomal protein L14P OS=Caldivirga maquiling... [more]
RL14_NITMS3.015e-2850.4150S ribosomal protein L14P OS=Nitrosopumilus marit... [more]
RL14_METBU3.938e-2846.9250S ribosomal protein L14P OS=Methanococcoides bur... [more]
RL14_HALSA8.773e-2849.2250S ribosomal protein L14P OS=Halobacterium salina... [more]
RL14_HALS38.773e-2849.2250S ribosomal protein L14P OS=Halobacterium salina... [more]
RL14_PYRCJ1.496e-2745.8350S ribosomal protein L14P OS=Pyrobaculum calidifo... [more]
RL14_PYRAE1.954e-2745.1450S ribosomal protein L14P OS=Pyrobaculum aerophil... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01H16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01H16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832199 ID=CF832199; Name=CF832199; organism=Citrus sinensis; type=EST; length=660bp
CAATGTCGAAGCGAGGAAGGGGAGGGTCGGCGGGGAACAAGTTCAGGATG
TCGCTGGGTCTGCCGGTGGCGGCGACGGTGAACTGTGCCGACAACACGGG
TGCGAAGAATCTCTACATAATATCGGTGAAAGGAATCAAAGGGAGACTCA
ACCGACTTCCGTCGGCCTGCGTCGGCGACATGGTCATGGCCACTGTCAAG
AAAGGAAAGCCCGATCTGAGGAAAAAGGTCATGCCAGCTGTCATCGTCCG
CCAGCGCAAGCCCTGGCGCCGAAAGGACGGCGTCTTCATGTACTTTGAAG
ATAATGCTGGTGTCATCGTCAACCCTAAGGGCGAAATGAAAGGATCTGCC
ATAACTGGACCAATTGGTAAGGAGTGTGCTGATCTGTGGCCAAGAATTGC
AAGTGCTGCCAATGCTATTGTCTGAGTGGGGGTTTTAAGGGATTTTTTTG
GCCTTAGTTTGGTAGGTGACCGTAGGGTCTGTTAATATCATTGGGATCAT
TTCCTACTGATGAGTGTTGTGGTTGTTCCTCTATTGGCTATTGCTAGACA
GATACAAGGAGATTTCAGATTTTCTACCTATTCTAATTGTAGAAGAATTT
AATTTGTGTTTAATTTCCAAGAATTTTGTTCTTTTAAGAGAATATTGATT
TTGTTCTAAA
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